Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                           ------------>CBF                                        ---------->DOF2                              <---------ATHB12  <---------ICU4                              ------------>CBF  --------->YAB1                             --------->ANAC58  <---------ATHB12                          ------------>CBF--------->ANAC58                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       ----------->RAV1(1)--------->ANAC58                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       ----------->GT1                    --------->AtMYB61  ------->GAMYB                   --------->YAB1                 --------->ANAC46      --------->AtMYB61               <---------ICU4                 <---------ALFIN1    -------->P--------->ICU4         <---------YAB1                 --------->ANAC58   --------->WOX13(1)                --------->ICU4        --------->At5g28300  --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->WOX13(1)     <---------ICU4       ----------->GT1--------->ANAC46--------->MYB46(3)           --------->ICU4 ---------DOF2   --------->ANAC58 <---------ATHB12                <---------ANAC55(2) ------>TOE2(3)--------->AtMYB61--------->WOX13(1)    --------->MYB46(3)  <-----------GT1      ------ -->HVH21   <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->ANAC55(2)          <-----   cctttaatacagtaaaaccacaccacaacacaatcaatcaaccaaagcaatcatcaacaactccgattacttattattacgatgtaaataacaaatgaaa  20320900                                          --------->GLK1(2)                                   --------->ANAC46                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                   --------->ANAC58                                   --------->ANAC58                                 --------------------->WRI1                              <-----------GT1                           --------->ARR14(2)                           <---------ARR14(2)                        <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        --------->HSFB2a(2)                        <---------HSFB2a(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <-------TEIL      <---------LBD16 --------->ANAC58              <---------LBD16   --------->YAB1   --------->GLK1(1)  --------->ANAC58      <------ZmHOX2a(1)                    xxx <---------TOE1(2)  <---------GLK1(1)xxxxxxxxxxxxxxxx>smallRNA(i) ------->TEIL                  ----- --->GLK1(1)       xxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------At4g35610           ---------->DOF2 ----GLK1(1)  --------->MYB52(1)--------->ANAC46      --------->AtLEC2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   tccaatgttcataaaacaagggatttctggattcacctcgcaagaatcgacgttctatgcagaggatgaatctcggaatgttttcagagagaaaggaata  20321000                                                       <-----------ARR10                                                       --------->AGP1                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                --------->At4g35610                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           ------                                           --------->ATHB12                                  --------                                  <---------ANAC55(2) --------->At4g35610                    <-------                       <---------ARR14(2)  <---------AHL20(2)     --------->ANAC55(1)--------->ORA47(1)                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ANAC46         <---------RAP2.6(3)                       --------->TOE1(2)  --------->AHL20(2)--------->ANAC58      --------->At4g35610           --------->TOE2(3)      --------->ANAC55(2) <---------At4g35610         <---------At4g35610 --------->MYB46(3)    --------->ARR14(2) --------->ICU4    --------->ANAC58     --------->DEAR3(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->RAP2.6(2) ---->YAB1 --------->YAB1    ----------->HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->DEAR3(1)   acaacaacttcaacgataacatgaaaatacgatgacacttgatatttattagcttcagctctacgcacacttaatttgaatcacagccgtccattgatct  20321100                ------->MYC4                ------->PIF5                ------->MYC2                <-------MYC4                <-------MYC2                >>>>>>>>>>AtbZIP1                <-------PIF5                <-------MYC3                ------->MYC3               --------->PIF3(3)               <---------O2               >>>>>>>>>>HY5               --------->TGA1a               <---------TGA1a               <---------PIF3(3)               --------->O2               --------->ANAC46          --------->ORA47(1)          <---------RAP2.6(3)         --------->RAP2.6(2)         --------->DEAR3(1)                                            <---------AHL20(2)       <---------At4g35610                  <---------ALFIN1      <---------YAB1       --------->At4g35610           <---------CCA1(2)     <---------ANAC46            <----------DOF2      --------->DEAR3(1)       <---------ARR14(2)          <---------ANAC58         <-----------GT1   --------->YAB1              --------->ARR11(3)          <---------ANAC58     <----------DOF2     - >ZmHOX2a(2) <---------ALFIN1  <---------ARR11(3)        ------>ZmHOX2a(1)    ---------->ID1        < ->ARR11(3) <---------WRKY12   --------->ARR14(2)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  <-------- --ARR11(3)<----------------PIF3(2)------>ZmHOX2a(1)   ----------->RAV1(2)   <-----------GT1---------   tctaatcacagccgtccacgtggccttactcaatatcctgtatcacacacattattctcctgcttgttctgattttttttttcttttttcttttctagat  20321200                             --------->ANAC55(2)                                             --------                             --------->ANAC58                                        --------->TOE1(2)                             <---------ANAC55(2)     <------MYB46(1)                 --------->TOE2(2)                             ----------->GT1         <------MYB83                   <---------ZAT2         <-----------GT1     --------->ANAC46        <---------DEAR3(2)             ----------->RAV1(2) -------->ARR11(3)           --------->ANAC55(1)--------->DAG2              <---------MYB46(3) ---------ARR11(3)           --------->ANAC58  --------->DAG2               --------->MYB55(2) ------ -HSFB2a(2)               ------>ZmHOX2a(1)   ---------->DOF2<-----------RAV1(1)    --------->ZAT2 >HSFB2a(2)        <----------DOF2   ---------->DOF2--------->MYB59<---------ZAT18 ------->TEIL<-----   aagatttcaattcacaaatttctttttcctcacgtaaaaaaaagaagaaaaaggtcggtctacttgtggctcactcagtggttcgaacctgggtttagat  20321300                                    ---------->DOF2                                 --------->AHL20(2)                              <---------ICU4                              --------->ATHB12                                        <---------HSFB2a(1)     <---------WRKY18(1)      --------->YAB1                                          --------->HSFC1(2)     *TSS                     -------->HAHB4                                          <---------HSFC1(2)    --------->WRKY38(1)      <---------YAB1                                 --------->At5g28300  <---------ANAC58           <---------ATHB12                              --------->LBD16  >>>>>>>>>>WRKY18          <---------TOE2(3)                             --------->ANAC55(1)  <---------ANAC58         --------->YAB1                                 --------->ANAC58 --->ARR10 --------->MYB52(1)--------->ICU4                               --------->ANAC58          < --->ARR11(3)          --------->ZAT6          <---------AHL20(2)         --------->ANAC46        --- ----GLK1(2)       <---------MYB52(2)        <----------DOF2             <---------LBD16      -------   tttgacttgaccataacgaaaactaactctaatgattaaaaaggcttcttttattgtgctccgattccaaaatttcacggaaaatagaagcgtcgagttc  20321400                                                                        --------->MYB46(3)                                                                       ------>MYB46(1)                                                                       ------>MYB83                                                                     --------->AtMYB61                                                                     ------->GAMYB                                      <----------DOF2               <---------MYB52(2)                                     <---------ANAC58               <---------MYB55(2)                                 <---------ANAC58                  -------->P                                 <---------ANAC58                  --------->ANAC58                                --------->MYB52(2)                 --------->ANAC58        <-----------RAV1(2) <------MYB83                        --------->At4g35610       <---------MYB52(1)   <------MYB46(1)                     <---------At4g35610 ------>ZmHOX2a(1)       <---------MYB52(1)                    --------->ANAC46 ---------ALFIN1        <---------RAP2.6(3)               <----------DOF2 --->ZmHOX2a(1)         <------NtERF2<---------ANAC58 ---------->ID1--------->MYB46(3) -->ARR14(2)          <---------RAP2.6(2)         <----------DOF2--------->MYB46(3)   <----------DOF2   ctcctctccctcaggttgtcaatggccgctaggttacttgctttgagacgcgctttgtctcttttcagcaaccaacaacatcgttttcctttgtctcaag  20321500                                                                     <---------ZAT6                                                         --------->GLK1(2)                                 <---------TOE2(3)       --------->ARR14(2)                           --------->ICU4 ---------->DOF2<---------ARR14(2)            ------>ZmHOX2a(1)<----------DOF2     --------->ATHB12    ----------->GT1   <---------CCA1(2)<----------DOF2      <---------AHL20(2)   <---------ZAT18   <---------At4g35610  ---------->ID1   --------->AHL20(2)   --------->ZAT18                     <--   gtttcatctctctccttctcaactttgtcatctttaagaaaaattaaagagttattgaaaatcgggcactagagttaaactggtctcttaatctgtgtaa  20321600                                                                                                   --                                                                                                  <--                                                                                                  ---                                 <-------GAMYB                                         --------->ARR14(2)   <---------ANAC58             <------MYB83----------->GT1                            <---------ARR14(2)   <---------ANAC58             <------MYB46(1)                                        --------->ARR11(3) <---------YAB1                --------->MYB59        ---------->ID1       --------->ZAT6       ----- <-----------GT1            ------->TEIL    --------->AtLEC2   <---------YAB1         <------ZmHOX2a(1) -------AHL20(2)   <----------DOF2       <-------TEIL <---------TOE2(3)  <-----------GT1    <--------   tttatacttgccttgatgtttcttttgatgaatttggttgagattcatgtaaatttgtggtttttatgtttgaatttacactagaagaggattttgggga  20321700              <---------MYB46(3)            <-------GAMYB                          <---------YAB1          <---------TOE2(3)                        --------->ICU4 ------->GLK1(2)                                 --------->YAB1 -------ARR11(3)                                <---------ZAT6 ------>ARR11(3)      ---------->ID1 --------->ALFIN1            <---------ARR14(2)      <---------ARR11(3) ------>ARR10<--------P   <----------DOF2  <----------DOF2       --------->ARR14(2)      --------->ARR11(3) -LBD16   <---------TOE1(3)        --------->CCA1(2)  <---------YAB1          <---------CCA1(2)<-----   gattttggttttagggttgtttttgtagcttttagagatttggggcattagtgatgatgagtactcgtattctcatgtgtatatcatctaatatcgtctt  20321800  Previous    Next  AGI:  At3g54826.1    Description:  similar to Os02g0819700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048537.1); similar to hypothetical protein OsI_009279 [Oryza sativa (indica cultivar-group)] (GB:EAY88046.1); contains InterPro domain Zinc finger, Zim17-type (InterPro:IPR007853) Range:  from: 20321305    to: 20322799    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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