Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->HSFB2a(2)                            <---------HSFB2a(2)                      --------------->AGL15                      <---------------AGL15                     ----------------->AGL2                                    --------->ANAC58 <---------ETT(2)    <-----------------AGL2                                    --------->ANAC58 --------->ETT(2)    ----------------->AGL3                                  ---------->DOF2 ------->ZAT14       <-----------------AGL3                           <---------AHL20(2) -----At5g28300    <-----------GT1                                   --------->AHL20(2)           --- ------GT1 <-----------GT1<---------AHL20(2)                     ----------->GT1         <-----------GT1   ctgtagacaatatttcccttataactatttatagaaatactccaaaatactactagtgtattaaaaacagataaaattcaaaagcaaaattttaccaaaa  20289500                          --------->ATHB51                          <---------ICU4                          --------->ATHB12           --------->ANAC58                                                         <---------ICU4           --------->ANAC58       <-----------GT1                                --------->ANAC46          --------->DAG2 --------->ICU4                                      --------->GLK1(1)         ---------->DOF2 <---------YAB1                                      <---------GLK1(1)  <----  <---------ARR11(3)   <--------HAHB4         <-----------GT1               --------->ARR14(2)  -----  --------->ARR11(3)   --------->YAB1   ---------->DOF2                     <---------ARR14(2) ------ ------->DOF2         <---------YAB1--------->ZAT6                   ---------->DOF2--------->ATHB51   aaaagaacttaaaaagcaaatagtatcattattgtttaacaataaagtttacatttccatagaaatttcaaaaaatcggatacccataattttcgaggtg  20289600                                                                  <---------At4g35610                       <---------AHL20(2)              --------->ATHB51                       <---------AHL20(1)              <--------ATHB1      <---------ICU4   --------->AHL20(2)              <------------ATHB5     --------->ICU4 --------->AHL20(1)                 --------->YAB1     <---------YAB1<---------AHL20(2)                 --------->ICU4   --------->YAB1  --------->ATHB51               <-----------------AGL1  <---------YAB1   <---------ICU4               --------->ZAT18 --------->DAG2       <---------YAB1 -----ZAT18        --------->AHL20(2)        <---------ZAT6    ---------->DOF2  <----------DOF2 ---->ZAT18       --------->ICU4       --------->ATHB12<---------ICU4  --------->ANAC58             < --->ALFIN1 --------->ZAT6            --------->ICU4  <---------ATHB51 --------->ANAC58          <---   gactatcataatcaactctaattattttatttttctagcattgattagtgttcacaataatggcataaagcagacgcattaacttttgtaattggggttt  20289700                       <---------AHL20(2)                   --------->AHL20(2)                   <---------AHL20(2)                   <---------ICU4                   --------->ATHB51                  --------->ICU4               --------->AHL20(2)          <-----------GT1<-----------GT1    <---------ANAC58 <---------YAB1    <---------ANAC58--------->AHL20(1)            ---------->DOF2                             ------- <----------DOF2--------->YAB1            --------->ANAC46                           --------->DAG2 ---------DAG2 <---------AHL20(2)     <-----------GT1     ---------->DOF2           ---------->DOF2 --------GT1 <----------DOF2      ------>ZmHOX2a(1)  <----------ID1 <---------AHL20(2)       <-------   tacctttcgttttcactttaattattttaactaatcctttttacaagacccataaagaacaaaagtcaaaataatcgatagtctcaaaaagtcaagaatc  20289800                             ------>MYB46(1)                             ------>MYB83                           <---------MYB111(2)                           <---------MYB46(2)                           <---------MYB55(2)                           --------->AtMYB61                           --------->MYB46(3)                        <---------ALFIN1                        --------->AtMYB61                     --------->ANAC46                   --------->ANAC55(1)                   <---------ANAC55(2)                   --------->ANAC58                     <---------ICU4                   --------->ANAC46                     --------->YAB1             <---------YAB1<---------MYB111(1)       --------->YAB1        --------->YAB1 --------->MYB46(3)           <---------YAB1        <---------ICU4------->TEIL<---------ALFIN1--------->YAB1  <---------ALFIN1 --------->ANAC58      <------------CBF        --------->AtMYB61 -->GLK1(2)<---------ICU4 --------->ANAC46       ------>ZmHOX2a(1)      <---------ICU4              - --GLK1(2)--------->ICU4--------->DEAR3(1)     ------>ZmHOX2a(2)------------>CBF      <---------GLK1(2)   tctcacacactcattatgaacacgcaccaccaaacaacacttccattgatcctcataataatctccaccaatactcatttccctcttggattcttcaaac  20289900                                                  <---------ANAC58                                                  <---------ANAC55(2)                                                  --------->ANAC55(2)                                               <---------MYB52(1)                                         --------->ZAT14          <---------ARR11(3)             <---------ZAT14          --------->ARR11(3)             <---------ZAT18      ---------->DOF2                    --------->ZAT18                            ------->TEIL    ----------->HVH21             <----------DOF2 <---------ANAC58               <---------REM1(1) ----->ZmHOX2a(1)               *TSS    >>>>>>>>>>>>>>>>>LFY      <---------At4g35610      <---------   tcctctctgaaagttctcatttttggtttacatttcctttgagtccactgttacttactaaaatggtgagcaaatggaagaagatgaagctagctttgag  20290000                                               --------->ATHB12                                               -------->ATHB1                                               <---------ICU4                                        <---------MYB55(2)                                      <---------ARR14(2)                                  <------ZmHOX2a(1)                               <---------HSFB2a(2)                           --------->TOE1(2)  <---------YAB1     <----------CDC5<---------GLK1(2)                          <---------HSFB2a(1) --------->ICU4    --------->LBD16--------->At4g35610                        --------->ARR14(2)  --------->AtMYB61   <---------At4g35610                     --------->ANAC46 --------->ARR14(2)        ----------->RAV1(2)                     --------->HSFB2a(2)--------->MYB46(3)      --------->At4g35610  ------->TEIL      --------->LBD16  <------ZmHOX2a(1)     <---------GLK1(1)   <---------At4g35610 -- -DOF2      <---------MYB52(2) --------->HSFB2a(2)    <----------DOF2    --------->ICU4<----------DOF2   tttgaatctctgcaactatctccccagaaccctcgaggaggaaccaccatcattggctttgaattccgctgagacattatcagatgctgctttgctctct  20290100                                                  --------->HSFB2a(2)                                                  <---------HSFB2a(2)                                           --------->HSFB2a(1)                                          <---------TOE1(3)              <---------TOE2(3)                                          <---------TOE1(2)           <---------WRKY12          <----                                          <---------TOE2(3)         <-----------HVH21           <----                                     <-----------HVH21              --------->TOE2(3) <---------ICU4                                  <---------At5g28300            <---------ARR14(2)  --------->ICU4                                 <-----------GT1 ----------------->AGL2---------->DOF2--------->YAB1                         --------------------->WRI1       --------->At4g35610 --------->MYB52(2)----- ---->ZmHOX2a(1)      <---------ALFIN1    <---------TOE2(2)      --------->ARR14(2)--------->YAB1   cctcttaactggcccatgactccaacaccttcttcttaccgtcgaaggttgtccagaagtagcagcaaatcgtcaaaggtttgtttcatcatgacccata  20290200                                 <---------DAG2                                 <----------DOF2                              <---------------AGL15                              --------------->AGL15           --------->AHL20(2)<-----------------AGL2           <---------AHL20(2)<-----------------AGL3         <----------DOF2--------->ATHB12   <---------CCA1(2) ---------->DOF2 -----GLK1(2)      --------->ANAC58                                  <-------TEIL -----ARR14(2)     --------->ANAC46        --------->LBD16        <---------MYB46(3)          <------ ---->ARR14(2)     --------->ANAC58        ------>ZmHOX2a(1) <----------DOF2     <---------ANAC46   ttctcaaatctctttaattccaagaaagattgctacttttggttcctgaaatactgacctgttctttgtggttcatgagtttgtcttggataagtcgttt  20290300                           <-------GAMYB                          --------->MYB52(2)                        <---------MYB52(1)                                                         <-                 <---------ANAC46                                                               -----                 <---------ANAC58                                                              ------    <----------DOF2 <---------ZAT14                                             <---------MYB52(1) -- ---MYB52(1)     <---------ANAC58 --------->ICU4 <---------ANAC46 ------>ZmHOX2a(1)            <-----   gctctgctttcgagctattgtgtgtagttagttgtaatgaagaagagcattgtgtctacttggaagtcctatttttgtatcagttaagccttatattcct  20290400  Previous    Next  AGI:  At3g54780.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G60710.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G38970.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70517.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61381.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68935.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain von Willebrand factor, type A (InterPro:IPR002035); contains InterPro domain Zin Range:  from: 20289932    to: 20292529    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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