Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  ------>NtERF2                                                                <------NtERF2                                                               ------>NtERF2                                                               --------->RAP2.6(2)                                                              --------->DEAR3(1)                                                              <---------DEAR3(1)                    <                                                              <---------RAP2.6(2)                   <                                                             --------->ATERF1(1)                    <                                                             --------->RAP2.6(3)                    -                                                            <---------ATERF1(1)                     =                <---------GLK1(1)        <------NtERF2     <---------DEAR3(1)                       =               <---------ARR14(2)      <---------DEAR3(1)  --------->ANAC58                         <           <------MYB46(1)      <------NtERF2              --------->ANAC58                         -         <--------P            ------>NtERF2              --------->SPL7                        -----      <---------YAB1          <---------ALFIN1      <-------GAMYB           ------>ZmHOX2a(2)   <----  <-----------HVH21       <---------RAP2.6(2)       --------->At4g35610  --------->ATHB12     ------- ---ZmHOX2a(1) --------->ARR14(2)--------->DEAR3(1) --------->ZAT2    --------->YAB1          ------- ----ANAC46<------MYB83  --------->RAP2.6(3)        <---------At4g35610 <---------YAB1    --------->ANAC46   gagaggtcatggtaggggatttacgaagacggccaccgagggaggcgagattgcagttggcacggcggccattgatgatcggagtagagtcttcgcaagc  20286500         <----------DOF2       --------->At4g35610       --------->ZAT2       <------NtERF2       <---------ZAT2       <---------At4g35610 ---------ANAC58 ---------TGA1a ---------O2 -------->TGA1a ===================bZIP_DOF ===================bZIP_DOF      --------->YAB1 ---------ANAC58                ------>MYB46(1) -------->O2                    ------>MYB83                             <----------ID1 ---->ARR11(3)               <---------ANAC55(2)                     ---------->DOF2     ---------->DOF2 -----ARR11(3)               --------->ANAC55(2)             ---------->DOF2  ---------->DOF2 -->ANAC58                 <-----------GT1                <---------------------WRI1---------->DOF2 -->ANAC58            ---------->DOF2         <---------AHL20(2) <----------ID1--------->DAG2 -------   tctcgtggcagctttcgcatctttgaaagtcacctatcaaaaacatattttaaaacaaaatgagaaaggaacaaagaaacaaaagtgaaagaaaagaaac  20286600                            ------>ZmHOX2a(1)                        --------->ARR14(2)                   --------->ATHB12                        <---------ARR11(3)                  <---------YAB1                        <---------ARR14(2)                <---------ICU4                  --------->ANAC58                       --------->ICU4                           <--                  --------->ANAC58    <---------ANAC46  --------->ARR11(3)                       ----     <---------------------WRI1    <---------DEAR3(1)<------NtERF2        <---------ARR11(3)     <---    <------ZmHOX2a(1)  <---------CCA1(2)           <---------ANAC46       --------->ARR11(3)    ----- -->CCA1(2)     ---------->DOF2   --------->SPL7   --------->ETT(1) ------>NtERF2              ------   gagagaggaaggaacatacaaagccatatcctttggaacggcgagtgagtttgtcggagataatgactgcctccaagatgtccccatacttgatgaaatg  20286700                                    ------>ZmHOX2a(1)                                    XXXXXXXXXXXXXXXXXXXX>MIR2934     --------->LBD16                                 <---------ATHB12           <---------ANAC58                       --                                <---------ARR14(2)          <---------ANAC58                     <---        <---------ANAC58        --------->ARR14(2)          <---------ANAC46                     <---        <---------ANAC58   --------->ANAC58             <---------ZAT2                         ------ -------YAB1               --------->ANAC46             --------->ZAT2  --------->HSFC1(2) <---------ANAC58 ----->ARR11(3)      --------->ARR14(2) <---------TOE1(2)  <-------TEIL <---------HSFC1(2) <---------ANAC58 ------ARR11(3)      <---------ARR14(2)------>ZmHOX2a(1)<---------At4g35610      <---------DOF5.7(2) ---->YAB1  --------------------->WRI1--------->TOE1(2) --------->At4g35610    --------->DOF5.7(2)<-- --->ICU4   <----------DOF2--------->ANAC58     <----------DOF2     --------->ANAC46  <-----------RAV1(1)   atcatacattgcttctttgtgagtatcccaagccaatcctcctacgaacactttggtcagcttcgtgtctccgaaacatccgttcacgttgttgctcgtc  20286800       ------>ZmHOX2a(2)     <---------ARR14(2)                                                        ---------->DOF2 ------->ATHB12                                                             ----------->TBP         - --------HVH21             ---------->DOF2                                  <---------AHL20(2)   ---- --------TGA1  <---------ANAC58                                       --------->AHL20(2)        ----- ---->ID1      <---------ANAC58        <------NtERF2                  <---------AHL20(2)        <---- -------YAB1   <---------ANAC46---------->DOF2         <------ZmHOX2a(1)    *TSS--------->DAG2-------   gtcattggatcgtgtttgtgtgtgagagagaaagaaagggcagagatagagagagaaggagagcgaattgaattatatataaaaagtgagagagaataat  20286900                                           <--------P                                         --------->ANAC58                                       <-----------RAV1(2)                                    --------->ZAT18                                    --------->ETT(2)                  ------------>CBF                                 <------MYB83                   <---------ALFIN1                                <---------AtMYB61               --------->REM1(1) --------->DOF2                <---------WOX13(1)              <---------ZAT14 ----->YAB1             ----------->HVH21--------->ANAC58      --------->ZAT14 ---->ICU4        ---------->DOF2<------MYB46(1)           --------->ZAT6 -----YAB1----------->GT1     <---------GLK1(2)            <---------ICU4 -->YAB1  <---------ANAC46    <------------CBF       --------->ANAC55(2)              <---------ICU4-   aataaagaagttgtgtaaaataaagagtgacagattggtggacaggtaagtcttaacgtgatcactacacccttcaatatgtctctattcatttctctta  20287000                                 --------->ANAC58                                 --------->LBD16                                 --------->ANAC46                                 --------->ANAC58                                <---------LBD16                                 <-----------HVH21                             ------>MYB46(1)                               --------->ZAT18                             ------>MYB83                                  <---------ZAT14                            --------->WOX13(1)                      <---------AHL20(1)                           --------->AtMYB61          <-----------GT1<---------AHL20(2)                  ------>ZmHOX2a(2)                --------->YAB1   --------->AHL20(2)       <------- ------>TEIL     <------ZmHOX2a(2)--------->LBD16 <---------YAB1    <---------AHL20(2)     --------->AtLEC2   tgcattttctcttgatacgatcgcgactaccaatcccgcaaatgaaaaacttataataacatcaccacaattttttttgcactgtcatggcccatgcatg  20287100                         ---------->ID1                             --------->ARR11(3)                     <---------ANAC58                               <---------ARR11(3)                     <---------ANAC58                               --------->GLK1(2)                 <---------WOX13(1)     --------->DEAR3(1)   <---------O2               --------->ATHB12     ------>ZmHOX2a(1)        --------->ANAC46        <-----------RAV1(1)  --------->ZAT14                 --------->O2              ------->TEIL --AtLEC2     <---------YAB1------>ZmHOX2a(1)          <----------DOF2    --------->YAB1   ggtttcagcaatgttgttgattgacttgtcctacagtcctagccgagccaattggtgctttagacgtcaaaatctattacaactacatggacttcatttt  20287200                                              --------->bZIP60(1)                                              <---------bZIP60(1)                                       <---------WOX13(1)                                 --------->At4g35610                                 --------->ZAT2          ------>ZmHOX2a(2)           <---------At5g28300                              <------ZmHOX2a(2)         <------ZmHOX2a(2)           <-----------GT1                       --------->YAB1  <---------YAB1  <---------ARR11(3)     <---------AHL20(2)                      --------->ICU4 --------->ATHB12  --------->AGP1        <---------AHL20(2)            <---------ANAC46 --------->ARR11(3)        --------->ARR11(3)    --------->AHL20(2)   cttagaaaaatgttttgtggagcagtaatgagatcagcttgattaatgacttcatgagatcttaacccaaattttgaaatttttttttactgttttatac  20287300                                                       --------->ARR14(2)                                              --------->MYB46(3)                                            ------>MYB46(1)                                            ------>MYB83                                          <---------MYB59                 --------->ANAC46         --------->MYB46(3)                --------->LBD16          --------->ANAC58              ================================HOX2a_HOX2a              ------>ZmHOX2a(2)          --------->ANAC58         <---------WOX13(1)            <------ZmHOX2a(1)   ----------->GT1                     <-----       --------->ATHB51           <----------DOF2      <---------ARR14(2)                   <--------      <---------AHL20(2)         <---------ANAC58     ------>MYB83                       <---------MYB52(1)      <---------YAB1             <---------ANAC58     ------>MYB46(1)           --------->AHL20(2)   atatgtttataattgatccccaaaactgtatttttgctttaggacccaacaacaccaaatactgtataaactaaaatttagataaatttcagttattctt  20287400  Previous    Next  AGI:  At3g54770.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G20880.1); similar to unknown [Populus trichocarpa] (GB:ABK92502.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 20284694    to: 20286876    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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