Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------YAB1         ----------->HVH21                      --------->YAB1        --------->ETT(1)                <---------------AtSPL8     <------MYB46(1)                    --------------->AtSPL8                                 ------     <------MYB83                  --------->YAB1--------->AHL20(2)             --------->AHL20(2) -------->ATHB12                   --------->ANAC55(2)     --------->YAB1 ----------->GT1      <----- ------TEIL                        <---------ANAC55(2)<---------ZAT18   ---------->DOF2<----------DOF2   attcatttggtcggacctattgtctgtatgcatacttacataatagtacattataatccactcagaattgactagaaagaaaaaaaatgctttataaaaa  20269800                                                   <------NtERF2                                     <---------GLK1(2)                        <---------YAB1            ------>NtERF2                      <-----------GT1--------->ARR11(3)                     <---------YAB1  <---------ARR11(3)            <---------CCA1(2)<-----------GT1  <-----------RAV1(1)                            -------- --->AHL20(2)        <---------AHL20(2)    <-----------RAV1(1)        <---------YAB1        --------- ----AHL20(2)       <---------AHL20(2)<---------RVE1(1)  --------->AHL20(2)        ----------->HVH21   aatggaattatctcttatctatttttattattcactatagattttttgttgtcgcctaattcaatacagactataatttgttcaaatgacccaaataaaa  20269900                                                                       <-----------GT1                                                             <-----------ARR10                                                             --------->GLK1(2)                                                             <---------ARR14(2)                                                             --------->ARR14(2)       <---------ARR11(3) ->YAB1                                                  <------ZmHOX2a(1)------->GAMYB     <-------- >AHL20(2)                                       <----------DOF2    --------->YAB1    --------->ARR11(3)   attttggtttgtcagttttggttccttctatgttttagggacacagataaactttagcaggagtatctaagtataaccccatccataagataatttacat  20270000                                                         --------------->AtSPL3                                                         <---------------AtSPL3                                                         --------------->AtSPL8                                                      --------->AHL20(2)                                                      <---------AHL20(2)                                                  --------->AHL20(2)                                                  <---------AHL20(2)                                           ------>ZmHOX2a(2)                   <---------ARR11(3)     <------ZmHOX2a(2)                                         <      ------>NtERF2<---------AHL20(1)    <---------ARR11(3)                                         <     --------->DEAR3(1)         --------->YAB1    --------->AHL20(1)                             <---    <------NtERF2 <---------CCA1(2)      <---------ARR14(3)             ---------->DOF2         <----    --------->ATERF1(1)        <---------YAB1 <---------AHL20(2)     <---------------AGL15     ------   <-----------HVH21      --------->ZAT6 --------->ARR14(3)     <XXXXXXXXXXXXXXXXXXXXMIR830    <-----   <---------ATERF1(1)  <-----------GT1  --------->ARR11(3)  ------->TEIL     --------->ALFIN1------- ---GT1<------NtERF2<---------AHL20(2) ----------->ARR10 <---------------AtSPL8               <------   ctagtcgtcgcctatgctccatatattttcactatgaaaataagatcttaaattttttaaatgtacttcttctcaaaagagtgggaatttcatggaatga  20270100                                                                               <---------ANAC58                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                          --------->ALFIN1                                                                          <-----------RAV1(1)                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                          <---------REM1(1)                                                                          <---------ANAC46          -                                                                        <------MYB46(1)             <                                                                        xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        <------MYB83                <                                                                       <---------AtMYB61            -                                                                      <---------MYB52(1)           <-                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                     <-------GAMYB                 <-       --------->AHL20(2)                                           <---------MYB46(3)             --       --------->YAB1                                              <------NtERF2           --------->DEAR3(1)      --------->ICU4                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------YAB1                                             <---------ATERF1(2)      --------->DEAR3(2) ----------->GT1     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->DEAR3(1)      --------->MYB52(1) ---------TOE2(3)   ------>ZmHOX2a(1)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   -- ---------TOE1(3)   <----------DOF2                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)      <- ------WOX13(1) <---------ARR11(3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      -- --------CBF    --------->ARR11(3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)--------->ATERF1(2) --->ATHB12    --------->RVE1(1)                     <<<<<<<<<TBF1------>NtERF2<---------ANAC58   <-- ---ATHB1    --------->AHL20(2)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ALFIN1 -->ICU4 ----------->TBP                     <---------TOE2(3)   --------->ATERF1(2)   --------->DEAR3(1) ---YAB1 <---------YAB1                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->MYB46(3)   ttgaggtaattataaaaaaatcctttttctctctcaacttgacgactagggtttcttcttctccttgccgccgttggtgtggcctctcgcccaccggcga  20270200                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    =                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  xxx                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----        <----------DOF2                                                                         -----      ------>ZmHOX2a(1)                                                                        ------ -------->HSFC1(2)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------HSFC1(2)                                            ------>ZmHOX2a(1)                ------ ---------HSFB2a(1)                                 <---------ANAC58   ============================== -------->HSFB2a(1)                                 <---------ANAC58   <----------DOF2         ------ ----------ARR10                                   <---------ZAT2     <---------DAG2           <----- --------ARR11(3)                               <---------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->GLK1(2)                                <---------ANAC58   <---------ALFIN1        --------->GLK1(2) ------->ARR11(3)                     <----------DOF2       ----------->RAV1(2)            --------->ARR14(2) --------ARR14(2)        <----------DOF2      <---------YAB1<---------At4g35610            <---------ARR14(2) ------->ARR14(2)  ------>ZmHOX2a(1) <---------ANAC58      <---------ATERF1(1) ------>ZmHOX2a(1)----- -------GLK1(2)<---------ALFIN1      <---------ANAC58   <---------ATERF1(1)   <---------ALFIN1-------   gaatcttcctctttctccctcctcttcctttcttctatggctttagtgatgcttgctcgggctcctgctccacctttgctcctcccttctccgaatccgc  20270300       <----------DOF2     <---------ZAT14     --------->ZAT18     <---------ZAT18   --------->ZAT14   <---------ZAT18 -------->TGA1a ---------TGA1a ---------O2 =================bZIP_DOF ---------ANAC58 ---------ANAC46 ---------ANAC58 -----NtERF2 ------->ATERF1(1) --->NtERF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>ABI4(1) ----->RAP2.3(2) ------DEAR3(1) ----->RRTF1(2) ----->ATERF1(2) ----->RRTF1(3) ----->DREB2C(2)                                                   -------->P ----->DEAR3(1)                                                    ------>MYB83 ----->RAP2.3(3)                                                   --------->MYB52(1) ----->RAP2.6(2)                                                   ----------->RAV1(1) ---->ERF1                     <------MYB83                        ------>MYB46(1) ---->RAP2.6(1)                <------MYB46(1)        --------->ARR14(2) <xxxxxxxxxxxxxxxxsmallRNA(i) ---->DEAR4(2)                 xxxxxxxxxxxxxxxx>smallRNA(i)    --------->ARR14(2) ---->ORA47(2)                <---------AtMYB61      <---------ALFIN1 xxxxxxxxxxxxxxxx>smallRNA(s) ---->ATERF1(1)               --------->MYB59        ------>NtERF2<---------ALFIN1 ---->RRTF1(1)        <-----------GT1               <---------ETT(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --->At4g35610       --------->WRKY38(1)          ------>MYB46(1)<---------MYB55(2) --->LBD16           ----------->HVH21            ------>MYB83 --------->PCF2 =========bZIP_DOF --------->CCA1(2)            --------->AtMYB61--------->MYB46(3) >NtERF2 <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ARR14(2) ----ATERF1(1)    <---------ARR11(3)     ----------->RAV1(2)<---------HSFB2a(2)       --------->At4g35610 ---->RAP2.3(1)   --------->ARR14(2)    ------>ZmHOX2a(1)   --------->HSFB2a(2)       <---------At4g35610 -->ANAC46   --------->LBD16<---------MYB52(1)------->TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <--   cgccgtgtgctctaccgcaagatttgaccagtttggtctctccttctgaacctcccgaccctccagacccaccagactatctcgttggagcttccaactc  20270400                                          <------ZmHOX2a(2)                                         <---------ARR11(3)                                         --------->AGP1                                         <---------ARR14(3)                                         <---------AGP1                                         --------->ARR11(3)                                         --------->ARR14(3)                                         <---------ARR14(2)                                         --------->ARR14(2)                                        <---------CCA1(2)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                   ==============HOX2a_HOX2a                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <----------DOF2                                   ===============HOX2a_HOX2a                    <---------DAG2                               xxxxxxxxxxxxxxxx>smallRNA(s)                     <---------ANAC58                               ------>ZmHOX2a(2)                                <---------ANAC58 ----                              --------->CCA1(2)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <xxxxxxxxxxxxxxxxsmallRNA(i)            xxxxxxxxxxxxxxxx>smallRNA(i)                             --------->ARR14(2)                       ------>ZmHOX2a(2)          <---                             <---------ARR11(3)                      --------->CCA1(2)  <------ZmHOX2a(2)                             <---------AGP1                         --------->ARR11(3) xxxxxxxxxxxxxx                             <---------ARR14(2)                     <---------AGP1     <---------ARR11(3)                             --------->AGP1------>ZmHOX2a(2)        <---------ARR11(3) --------->ARR11(3)                             --------->ARR11(3)                     --------->AGP1 <-----------GT1 <-                            <---------CCA1(2)                       --------->ARR14(2) xxxxxxxxxxxxxx                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       xxxxxxxxxxxxxxxx>smallRNA(i)              <---------HSFB2a(2) xxxxxxxxxxxxxxxx                     --------->ARR11(3)----------->ARR10         --------->HSFB2a(2)<xxxxxxxxxxxxxxxx                     <---------ARR11(3)xxxxxxxxxxxxxxxx>smallRNA(i) <---------ARR14(2)xxxxxxxxxxxxxxx                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      --------->ZAT18  xxxxxxxxxxxxxxxxxxxxxxx                   <---------AtMYB61 <------ZmHOX2a(2)     <---------ZAT18xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---           <-----------RAV1(1)<------ZmHOX2a(2)       xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxx --------DOF2 <---------MYB46(3)   <------ZmHOX2a(1)  <----------DOF2<------ZmHOX2a(2)xxxxxxxxxxxxxxx   ctttctctcgattttgttgttgaggtcttcagatctaggatcagatcttgttcaggctttgagccctctagatctgggttttgctttacgatctattact  20270500          <---------ANAC58          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ANAC58          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------ARR14(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <---------ZAT18    --------->ZAT18    <---------ZAT14    --------->ZAT14 <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----->ZAT14 ------At4g35610 xxxxxxxxx>smallRNA(i2) --------ANAC46                      --------->ATHB12 xxxxxxxxx>smallRNA(s2)            <----------DOF2 xxxxxxx>smallRNA(se3)             <---------TOE1(2) xxxxxxxsmallRNA(si3)             <---------ANAC58 xxxxxxxx>smallRNA(se3)           <---------ANAC58                                         --------->YAB1 >smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     <xxxxxxxxxxxx ------ZAT14  <---------SPL7 ------>ZmHOX2a(1)                 --------->ANAC46      <xxxxxxxxxxxxxxx x>smallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------AtMYB61            ------>ZmHOX2a(1) ------ xxxxxxxx>smallRNA(le3)  <-----------GT1      <----------DOF2  <---------ALFIN1    <-----------GT1   gctgtgtgcagttcgtggtaccaagtatttcctctcgcttgtttggagctttggttctctattccacacctctctcatcctctagtcactctatcaaaag  20270600                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               --------->HSFB2a(2)                                               <---------HSFB2a(2)              ----------->GT1           <-----------------AGL3             --------->DAG2          <-----------GT1                                     <------ZmHOX2a(1)           ---------->DOF2       --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ----   ---------->ID1----------->GT1 <---------AHL20(2) <---------HSFB2a(1)    <---------ZAT18       <--- xxxxxxxxxxxsmallRNA(fl3) --------------------->WRI1--------->HSFB2a(1)  --------->At4g35610    ----- xxxxxxxxsmallRNA(se3)   <------------------------ANAC81                 <---------At4g35610    <---- --->DAG2----------->HVH21<----------DOF2   <----------DOF2         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   gttttgtctctctgaaaggtagtaatttctttgaattttttaccttcttttggaacatgccttcgtttatacttcagttccctcaccatgaggatgtgat  20270700  Previous    Next  AGI:  At3g54730.1    Description:  similar to ATOFP9/OFP9 (Arabidopsis thaliana ovate family protein 9) [Arabidopsis thaliana] (TAIR:AT4G04030.1) Range:  from: 20270237    to: 20271400    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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