Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------------->AGL15                                   <---------AHL20(2)                              <---------AHL20(1)                              --------->ARR11(3)                              --------->AHL20(1)                              <---------ARR11(3)                --------->ZAT14  <---------AHL20(2)                <---------ZAT18  <---------YAB1      ----------->GT1       --------->ANAC58 <---------AHL20(2)  --------->GLK1(2)   ----------------->AGL3 --------------AGL15 --------->ARR14(2)  ----------------->AGL1 ------------->AGL15 <---------ARR14(2)  ----------------->AGL2 ---------------AG  <---------GLK1(2)    ----------------->AG ------AHL20(2) --------->ZAT18<---------CCA1(1)    ----------->GT1 -----YAB1  <---------ICU4  --------->ANAC58 ---------->DOF2                    ------->GAMYB ----AHL20(2)   <---------ZAT14<---------RVE1(1) ----------->GT1             <-----------GT1 --YAB1    --------->ICU4 <---------AtLEC2<---------------AGL15    --------->ATHB12   tatttttttggtaataagtgcagaatttgcaagatattattttgccataaagagtagaaaattggaaattgattcgttttaaccccagtcttctgtgttt  20262400                                                           --------------->AGL15                                                         ----------->GT1                                                --------->LBD16                        <---------MYB52(1)     --------->HSFB2a(2)             <---------YAB1       -                     <------------MYB.PH3(1)   <---------HSFB2a(2)        <-------TEIL              <                    <---------At5g28300       <---------LBD16     ----------->GT1       ---------->DOF2     <-------TEIL  <-----------GT1        <---------GLK1(1)<---------------AGL15--------->YAB1     --   tcttacatacattattttgtataaccgttttttaaaaacgttgaatttcccagaagtatttgtaaatatagtaaaattcatattataaactaaagaagaa  20262500                        ----------->GT1                  <---------AHL20(2)                  <---------AHL20(1)                  --------->AHL20(1)                                                              ===                  --------->AHL20(2)                                                              ---                 <---------AHL20(2)         ----------->GT1                                 <--------           --------->YAB1               <---------AHL20(2)     <----------DOF2              ---------         --------->AHL20(2)            --------->YAB1       --------->ZAT6                  <--------  <---------YAB1 --------->AHL20(2)   --------->AHL20(2)  <-----------GT1                   --------- -------->YAB1<---------AHL20(2)  --------->AHL20(2)   --------->TOE1(3)                    --------- ---------ICU4--------->AHL20(2) <---------AHL20(2)    --------->TOE2(3)           ----------->HVH21 ------->ICU4--------->AHL20(2) --------->AHL20(2)     <----------DOF2      <---------ZAT6  ---------   aatgatgacaaaataataaataaattcagtgaaatttaaaataaaaatgtaaaaaaactttaacactttaaaaattcagtgttatttgacacaaaatctt  20262600                                                                                         ------>MYB46(1)                                                                                         ------>MYB83                                                                                       --------->TOE1(2)                                                                                      --------->MYB46(3)                                                                            =========================       <------ZmHOX2a(1)                                                    ---------->DOF2       ===================================HOX2a_HOX2a                 <---------TOE2(3)--------->TOE2(2)     --------->YAB1                                             <---------TOE2(3)     <---------MYB55(2) =========================================================================MADS_MADS   <---------MYB52(2) ------------>AGL15                                             <---------TOE1(3)--------->LBD16 -ARR14(3)                                                      <---------YAB1--------->MYB52(1) >ARR14(2)                                                   <---------AHL20(2) <---------ANAC46 -ARR11(3)                                         --------------->AtSPL8>>>>>>>>>>GT-3b--------->MYB52(1) >ARR11(3)                             --------->YAB1     <---------------AGL15 <---------LBD16   --- >ARR14(3)                         ------>ZmHOX2a(2)     <-----------------AGL3<---------LBD16   <--- >GLK1(2)                    <----------DOF2     <---------ANAC46     ----------->GT1 --------->DEAR3(2)   ctatcaataggaatacaaattgtttttttttctttgatcgttcataaaacgacgtagtaccaatttatggttaagaaaaatagcgggaaccaacgtttag  20262700                          <---------TCP11(2)                    --------->ICU4            --------->O2  <---------PCF5            <---------ANAC46            <---------O2  <---------TCP15(1)            <---------ANAC55(2)            --------->ANAC55(2)            <---------ANAC58 ----------->RAV1(1)            >>>>>>>>>>HY5 <---------TCP20            <---------bZIP60(1)            <---------TGA1a--------->TCP16(2)            --------->TGA1a--------->TCP23            <---------ANAC58 <---------ALFIN1            --------->bZIP60(1)            <---------ANAC55(1)            <---------bZIP60(2)           ----------->STF1--------->TCP15(2)         ----------->TGA1 --------->PCF2         ----------->HVH21--------->PCF5        <---------WOX13(1)<---------TCP16(1)<---------ANAC58               <----------DOF2    -------       <---------ANAC58   <---------PCF2    <---------ANAC58               <---------------AGL15       <---------ANAC58  <-----------TCP11(1)     <<<<<<<<<TBF1            ========================== =====================bZIP_DOF   --------->At4g35610 <<<<<<<<<TBF1<---------WRKY18(1)<---------At4g35610 ------>GLK1(2)     --------->ARR14(2)   <---------WOX13(1)      ----------->HVH21   --------->At4g35610 ------GLK1(2)      <---------ARR14(2)  <------------CBF  <---------ALFIN1--------->TOE2(3)   -------   aatcggtttgagtgacgtggcaaatatgggcccacagctatagattgccttcttcttcttccacctcttgacccttcctttaatgagagctcaaaaccct  20262800                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                -----                                                                                                <----                   *TSS                                                                     <--------            --------->ARR14(2)                                                              ---------            <---------MYB52(1)                    <----------DOF2   ---------->ID1        --------->ANAC58 -->TOE2(3) <---------ARR14(2)                  --------------->AGL15                     --------->ANAC58 ===============================================================MADS_MADS               ---------->DOF2 -->TOE1(3)<---------RAP2.6(3)--------->ANAC46  =====================================================   aatttctattagccgttacgctctctaacttcacatcacttccctaatctctcttttcagcaatgagctcgtcgtctaaaattgattcagagaagccagt  20262900                                                          <----------DOF2                                                        <------ZmHOX2a(2)                                                        <---------RVE1(1)                                                       --------->ARR14(3)                                                       --------->AGP1                                                       <---------ARR14(3)                                                       <---------AGP1                                                       <---------ARR11(3)                                                       <---------ARR14(2)                                                       <-----------ARR10                   <---------AHL20(2)        --------->ANAC46                               --------->ARR14(2)           ----------->GT1       --------->LBD16                                 --------->ARR11(3)        --------->ARR14(2) --------TOE2(3)                                 --------->DAG2                  ------->TEIL --------YAB1                                  ---------->DOF2                   --------->GLK1(2) --------TOE1(3)                            <---------MYB52(1)     ---------->ID1<---------ARR14(2) ---->ARR14(2)                            ----------->GT1------>ZmHOX2a(2)      <---------GLK1(2)  -- -----ARR14(2)                      --------->YAB1    <---------CCA1(2)      --------->TOE1(3)     -- ---------AGL2                   ------>ZmHOX2a(1)   ----------->ARR10 --------->ANAC46   --------->AHL20(2) -------->AGL3                   ==============================HOX2a_HOX2a   --------->TOE2(3)     -- =========MADS_MADS              ===============================HOX2a_HOX2a ----------->RAV1(2)  ----   tatggtttccgagtcactattttctaccaagactcctatcaaaaccgttaaaaggcagatcttttcttcgtccccaaaacctgaatctgttataaaattg  20263000             --------->ATHB12           <---------WOX13(1)    ----------->GT1   --------->DAG2 ---------->DOF2                                                               --------->ATHB12     < ------->ANAC46      --------->ATHB12                                         <---------YAB1        - ------->ANAC58  --------->ATHB12   <---------DAG2                            <---------AHL20(2)    < ------->ANAC58<---------WOX13(1)   <----------DOF2                        <---------AHL20(2)    ---- ------------->AGL1<---------WOX13(1)                    <------------------------ANAC81       <-----   cccgaaaggtgagattgattgattgatttgttcatacacttttctcaaatttggactattctttcaattttgttgatttttttattggcattacaggttc  20263100                                                                          --------->ANAC46                                                                    ----------->RAV1(1)                                                                   --------->ANAC46                 <                                                                 <---------DOF5.7(2)                -                                                                <---------WRKY12                    -                                                     ---------->DOF2------->GAMYB                   < --------->GLK1(2)                                  <---------AHL20(2)    --------->ANAC58          < ---------ARR11(3)                          --------->At4g35610 <---------WRKY38(1)                 - -------->ARR11(3)                          <---------At4g35610 <---------WRKY45 <---------AHL20(1)<- ---------GLK1(2)           <---------ARR14(2)      --------->AHL20(2) <---------SPL7         <------ZmHOX2a(2) ----->HSFB2a(2)       <---------ANAC46--------->MYB59      <-------TEIL  --------->ANAC58   -------- --TEIL  <------ZmHOX2a(1)  --------->ARR14(2)<----------DOF2  --------->DOF5.7(2)           <-------   gagattttggaggaatttttcaatggtttggatactgcaattaggctgcttaaattaaagggttcgtcaacgacatacgctaatatatgtcccaagatcg  20263200 ---------ARR11(3) -------->ARR11(3) -------->ARR14(2)                                          ------->TEIL -----------ARR10                                      <-------GAMYB                 <---------DAG2 ---------ARR14(2)              --------->ANAC58      <-----------RAV1(1)            <----------DOF2 -------->GLK1(2)   --------->ATHB12               --------->GLK1(2)              <-----------GT1 --------CCA1(2)--------->DAG2  --------->ANAC58  <---------GLK1(2)          <------ZmHOX2a(1) ->ARR11(3)    ---------->DOF2  --------->ANAC46  <---------ARR14(2)       <---------TOE2(3) --ARR11(3) ----------->GT1<----------DOF2        --------->ARR14(2)     ---------->DOF2          <--   agtatcttactaatcggtaaagtcattgactttcacgcttcttgtttaaacggattctgttgaatcttgagagtttaaaggattaaactttttgatgcat  20263300  Previous    Next  AGI:  At3g54710.1    Description:  ATCDT1B/CDT1/CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 B); cyclin-dependent protein kinase. similar to ATCDT1A/CDT1/CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A), cyclin-dependent protein kinase/ protein binding [Arabidopsis thaliana] (TAIR:AT2G31270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70694.1); contains InterPro domain DNA replication factor CDT1-like (InterPro:IPR014939) Range:  from: 20262819    to: 20265177    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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