Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                              <------                                                                                       ------->TEIL                                                                                   --------------->AtSPL3                                                                  <---------YAB1   <---------TOE1(3)                     <---------TOE2(3)                   --------->ARR14(2)       <-----------GT1           ----------->RAV1(1)                           <---------ARR14(2)       <---------DOF5.7(2)          --------->ANAC46        ---------->DOF2   --------->MYB52(1)            --------->MYB52(1)    <<<<<<<<<SARD1<---------MYB52(2)                <---------ARR14(2)    ----------->GT1<----------DOF2    <<<<<<<<<CBP60g --------->MYB52(1)             <------ZmHOX2a(1)---------->DOF2<---------TOE2(3)   aatccaaatttcccaccagaactaacgataagttttaaaagtccaattcttgaggaacggattggaatatgaaagacggagaattaacgtactttgcctt  20236100      <---------At4g35610      --------->At4g35610      <---------ZAT2                                      --------->ANAC58                      <----      --------->ZAT2                            --------->ALFIN1                              ------- ---ANAC58    ---------->DOF2                --------->ALFIN1           ------->TEIL---------->DOF2<- ---ANAC58<---------ANAC46             <------ZmHOX2a(1)  --------->ANAC58      ---------->DOF2 -----   gttttttgagctgtgtgaaagtatcagcgagaccgagagtaggagaagaggtggagagagaagccatgggagtgaatctcttgaaagaaagcgatgaatc  20236200                                                                  --------->ANAC58                                                                  --------->ANAC58                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                      <---------ARR14(2) --------->LBD16  <------ZmHOX2a(1)               <---------LBD16      <------NtERF2 -------RAV1(2)<------NtERF2  --------->GLK1(2)        <---------LBD16 >TEIL       <---------ANAC46--------->ARR11(3)       ------>NtERF2     ------->GAMYB -----ZmHOX2a(1)             <---------ARR11(3)      --------->ANAC46  --------->MYB46(3) ---->YAB1  <---------LBD16<---------TOE2(3) <------ZmHOX2a(1)  ---------->DOF2        <----------DOF2   aggaggagaagaatggcggaatccaatttgagattttggggattggaggaagaagacgccggatttgaaagcaatcgccatttgaaaaactttgtggaat  20236300                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                               --------->CCA1(2)  ---             <-------GAMYB                   <---------AHL20(2)               --------->ARR11(3)  ---            <------MYB46(1)            --------->AHL20(2)              <-------MYC3               ---            <---------MYB46(3)       <---------AHL20(2)                ------->MYC3              <---            <------MYB83             --------->AHL20(2)          --------->ARR14(2)           <------           <---------AtMYB61       <---------YAB1                <---------ARR14(2)     --------->AHL20(2)           --------->MYB59       <---------AHL20(2)      --------->MYB52(1)   <---------ARR11(3) <---   tttggaaatgagtttggttgaagaagagcgagtgtttatttttatatataaaaactgagtaacagcgattccacgtttgagatatatgaaaaaaatgagg  20236400                                  <---------MYB52(1)                                  <------NtERF2                                 <-----------TGA1                                 ------>NtERF2                                 <---------RAP2.6(3)                                 <-----------HVH21                                --------->ATERF1(2)                                --------->bZIP60(2)                                --------->RAP2.3(2)                                --------->O2                                --------->RAP2.3(3)                                --------->bZIP60(1)                                --------->RRTF1(3)                                --------->RRTF1(2)                                <---------ATERF1(2)                                --------->DEAR3(1)                                <---------bZIP60(1)             ------>MYB83      --------->DEAR4(2)            --------->ANAC58   --------->ORA47(2)            --------->ANAC46   --------->ERF1         -------->P            --------->RAP2.3(1)    --------->GLK1(1)          <------NtERF2 ------->At4g35610             --------->ATERF1(1) -----MYB83 --------->ANAC58   --------->RRTF1(1) -----MYB46(1)                ------>NtERF2 --------->GT1                <---------ATERF1(1) ------>MYB46(2)              <---------RAP2.3(1) ------>MYB59------>MYB46(1) --------->DEAR3(1) ------>MYB111(1)           --------->ATERF1(1) ------>MYB111(2)           --------->RAP2.3(1)                    <---------ANAC58 ------MYB55(1)       <---------ARR14(2) --------->REM1(1)         <---------ANAC58          -------- ---TOE2(3)--------->MYB46(3)<---------DEAR3(1)               <---------At4g35610       ----------->GT1 -----P <-----------GT1  <-----------RAV1(2)                  --------->At4g35610<----------DOF2    -   taggtgaaatctaccagccaagagtattcaggcgccgtcacttacatcttcgagctattttgacttctgacttgctcttccatctttgttttgtaaaaat  20236500                                                 --------->YAB1                                                <---------YAB1                                              <---------ICU4                                              --------->ATHB51                                              <--------HAHB4               --------->YAB1                                             <---------YAB1             <----------DOF2                                             --------->ICU4        --------->KAN4(1)                                     <---------AHL20(2)            <---------KAN4(1)                                 <---------CCA1(1)                <---------YAB1--------->ICU4                                <---------AHL20(1)               <---------GLK1(2) *TSS                           --------->ARR11(3)             --------->ICU4 ---------->DOF2     <-- ->ICU4<---------CCA1(2)        <---------ARR11(3)<---------AHL20(2) <---------YAB1     <---------AHL20(1) -------->MYB46(3)<-----------GT1<---------RVE1(1)--------->AHL20(2)--------->KAN4(2)----------->GT1   caaacacccatatttttgtttttccattttgtaagatatttgatttcattattaaaatttgactaaagattattctttgataaagattagtatatttgaa  20236600                                           <------MYB46(1)                                           <------MYB83                                             <                                           <---------ANAC46                                         -                                          --------->MYB55(2)                         ---------->DOF2-                                          <---------MYB46(3)                     <---------ANAC46   <                                          --------->MYB111(2)                    <---------ANAC58  <-                                          <---------AtMYB61                --------->ATHB12        --                    ---------->DOF2       --------->MYB111(1)             <---------YAB1         ---- --------DOF2   --------->AHL20(2)        --------->MYB46(2) ----------->GT1     <---------ANAC58----   ctttctaaactatttgaataaaaaaagatgaacaagattagagtttggtggagaagattagagttgtatattgtatatgatttgcgagaaagagagacca  20236700               <---------YAB1             --------->YAB1             <---------ICU4             -------->ATHB1            <---------ATHB51      <-----------GT1      >>>>>>>>>>WRKY38      >>>>>>>>>>WRKY26                  --------->YAB1      >>>>>>>>>>WRKY43                 <---------ATHB12 ---------AHL20(1)             <---------MYB52(2) -------->AHL20(1)            --------->ANAC46 -------->AHL20(2)            <---------ANAC55(2) ---------AHL20(2)            --------->ANAC55(2) --------AHL20(2)             --------->ANAC58                                               -------- ------->AHL20(2)             ----------->GT1                ---------->DOF2   <---------ZAT18    <-- -->MYB46(1)<---------ATHB12  --------->ANAC55(1)        --------->GLK1(1)     --------->ZAT18    --- -->MYB83   --------->ICU4    --------->ANAC58  ---------->DOF2  --------->AHL20(2)          <-------   aataaatttgaccaattattcttatgtgaaacaagtaacaaatcataaacaaaagtctgaaatcaaagaaaatacccctagtactctagtagtatataat  20236800                                   --------->ANAC46                           <---------AHL20(1)                           --------->AHL20(2)                           --------->AHL20(1)                  ---------->DOF2 ->AHL20(2)                <---------AHL20(2)       --------->YAB1                  ------->GAMYB -------AHL20(2)   --------->YAB1  --------->ANAC58--------->ICU4                --------->MYB52(1) ------>AHL20(2)  <---------YAB1   --------->ANAC58<---------ATHB12              ----------->RAV1(1) --AHL20(2)<---------GLK1(2)<---------AHL20(2)     <---------YAB1        ----------->GT1           --   ttaaacaaatacagaatgttatcatacaatttattcgaagcaattggagaacaatgataaacatgtaaagttgataagtgaaacaacagaagagaacgtg  20236900                          --------->At5g28300                        ---------->DOF2                       <---------ZAT18                             <---------ATHB12                       --------->ZAT14                    <---------bZIP60(2)                       <---------ZAT14                    <---------ANAC58                     <---------ZAT14                      <---------ANAC58                --------->ZAT18                           <---------TGA1a        <---------TOE2(3)                <---------ZAT14  --------->AHL20(2)       ======================bZIP_DOF <-----------       --------->GLK1(2) ----------->GT1                  <---------O2        <---------YAB1   --------->YAB1  --------->ANAC46           --------->ANAC46 ----------------->AGL3  --------->YAB1 ----------->RAV1(1) --------->ZAT14   <---------YAB1  ----------->TGA1    <---------YAB1------------ ---->ZmHOX2a(2)--------->ZAT14  <---------AHL20(2)    ----------->HVH21 <------ZmHOX2a(1)   <-------   atccaacataatctgatgtacacagtacagtaaatataaatatggtagacgaaaattgtgacgagtccaataaaaggattattaatgtataatggtacac  20237000  Previous    Next  AGI:  At3g54640.1    Description:  TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN); tryptophan synthase. similar to tryptophan synthase, alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT4G02610.1); similar to tryptophan synthase, alpha subunit (TSA1) [Isatis tinctoria] (GB:CAH56477.1); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785); contains InterPro domain Tryptophan synthase, alpha chain; (InterPro:IPR002028) Range:  from: 20234126    to: 20236501    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g54650.1    Description:  F-box family protein (FBL17). Identical to F-box/LRR-repeat protein 17 (FBL17) [Arabidopsis Thaliana] (GB:Q8W104;GB:Q9M1T4); similar to unnamed protein product [Vitis vinifera] (GB:CAO22637.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 20236751    to: 20239899    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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