Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ---------->DOF2                                                           ------>ZmHOX2a(2)                                                          --------->GLK1(1)                                                          --------->At4g35610                                                  --------->ATHB12   <---------------AGL15                                             --------->ATHB12  ---------->DOF2                                            <---------YAB1<------ZmHOX2a(2)                                          --------->YAB1 <---------ARR11(3)                 <---------ICU4          <---------ATHB51--------->ARR11(3)                   -------      ----------->GT1                    <---------ATHB12--------->ARR14(2)                   <------ ->ANAC58       <---------YAB1           --------->ICU4  <---------ARR14(2)    <---------AHL20(2) <-- ->ANAC58     --------->YAB1<---------YAB1<---------ICU4<------ZmHOX2a(1)   ----------->GT1--------->ANAC46   aagagaaacagataattcatcatggagattagaattgaattcaattatgatttgattaggatctgcaaagtctcaaagtagtaaatttgagacacagaac  20184000                                                           <---------AHL20(2)                      <<<<<<<<<<WRKY38                     --------->AHL20(2)                      <<<<<<<<<<WRKY43             ------->GAMYB        ----------->GT1                           --------->ANAC58     <---------TOE2(3)<<<<<<<<<<WRKY26            --------->ANAC58  --------->ICU4    <------MYB46(1)               --------->ANAC46 -->ARR14(2)        <------MYB83                --------->MYB52(1)                     ---------->DOF2 ---ARR14(2)        ----------->GT1          --------->ANAC46---------->DOF2     ----------->GT1 ---------TGA1    <---------MYB52(1) --------->AHL20(2)    --------->YAB1   ---------->DOF2         >   cgtcattaagatgtgaaacagttggtcaaattttctaaatgaattacaaacaacgaaacaattaaaagcagaattgaacaaagaagtataaaagtatgag  20184100                                                                --------->GLK1(1)                                                                --------->CCA1(2)                                                                <---------GLK1(1)                                                               --------->ARR14(2)                                                               <---------ARR14(2)                                                               --------->ARR11(3)                                                               <---------ARR11(3)                                                              <------ZmHOX2a(1)                                                            <---------TOE2(3)  ------->GAMYB                                                        --------->At4g35610    ======================                                                        --------->ZAT2        --------->MYB46(3)                                                        <---------ZAT2        <---------MYB55(2)                                     <---------LBD16 <------ZmHOX2a(1)       --------->ANAC58   ---------->DOF2                <-----------GT1 --------->CCA1(2)     --------->DAG2     ---------- >>>>>>>>MYB2       ---------->DOF2 ----------->RAV1(2) <---------At4g35610  --------->ANAC58   aaaaccaaagtaatagatgcgaaaaagaaaccaattttacctggaattggagataggaagctgaggatatgcataaggcaaccatcgtcgagattgttaa  20184200 <---------TGA1a --------->TGA1a                                                                            ------->TEIL --------->ANAC55(2)                                                                     <---------ANAC55(2) <---------ANAC55(2)                                                                     --------->ANAC55(2) <---------O2 ----------->GT1                                                        ================ <---------ANAC58                                                <---------YAB1      ------>ZmHOX2a(2) --------->O2<---------TOE1(3)                              --------->HSFB2a(1)     ================= <---------ANAC46                                           <---------HSFC1(2)      <------ZmHOX2a(2) <---------ANAC58                                           --------->HSFC1(2)     <---------ARR11(3) ==========MYC_MYB                                          <---------HSFB2a(1)    --------->ARR11(3) ->GT1       <---------TOE2(3)                        <---------LBD16        <----------DOF2<--------   gagacgtgagagaataaggtttcattctcttcttcatcttcgattcaacaattctctctggatgcttcttattgtcgagctttgagatctcatgtaactc  20184300                                                   ------->GAMYB                                             --------->MYB52(1)            --------->At4g35610                                          --------->YAB1                --------->TGA2(2)                                      ----------->GT1                  <-----------HVH21                                     <------NtERF2 --------->RAP2.6(2) <-----------TGA1                                    ------>NtERF2<---------At4g35610  <---------O2                                   --------->DEAR3(1)                 --------->O2      <---------DAG2              --------->RAP2.3(1)                 --------->ANAC46      <----------DOF2             <------NtERF2  --------->At4g35610  --------->TGA2(1)    <------NtERF2   ------->TEIL  --------->ATERF1(1)                 <---------bZIP60(1)  <---------RAP2.6(2)            <---------RAP2.3(1)                  --------->bZIP60(1)  ----------------->AGL1         <---------ATERF1(1)------>NtERF2     <---------TGA2(1)  <-----------------AG--------->TOE1(3) <---------MYB52(1) <---------MYB52(2)  <-----------------AGL1         ------>NtERF2  ------->GAMYB        <-----------STF1 =================HOX2a_HOX2a   --------->DEAR3(1) <---------ZAT18 ----------->HVH21          *TSS  - =================HOX2a_HOX2a   <---------DEAR3(1) --------->DEAR3(1)----------->STF1    --------->MYB59 ---GT1    <------ZmHOX2a(1)  <-----------HVH21--------->MYB46(3)  --------->WRKY12  <---------MYB46(3)   catggccgctttaggaagtatgaaccctaactcgtcgccgtcgttaataacagccgactcaactatccattgacgtcatctcgacattggttatgtccgg  20184400                                                                                               <-----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              <------                                                                                             <------MYB46(1)                                                                                             <-------                                                                                             --------                                                                                             <------MYB83                                                                                             --------                                                                                            <--------                          <---------TOE2(3)                                                <---------MYB52(1)                          <---------YAB1                                                <------------AtMYB77                          <---------TOE1(3)                    --------->AHL20(2)  --------->YAB1                <---------ICU4                               <------------CBF   <---------ARR14(2) <-               --------->ICU4      <----------DOF2     ----------->GT1         <------ZmHOX2a(1)   <-              <----------DOF2   <---------YAB1       ---------->DOF2   ---------->DOF2<---------ARR14(2) ---------->RAV1(1)    --------->ICU4            --------->TOE2(3)  --------->AHL20(2)--------->ARR14(2)   tccaacaaaaacatgtctttatgacattatggttatgcttttttggagttttcttaaaagtaaaattgaataaaaaagagaggaatcgtaaccgttggtt  20184500    ------------>CBF ----WOX13(1) ---P -GAMYB ---ANAC58 ---ANAC58                               <---------At4g35610 --MYB46(3)                              --------->At4g35610      <---------ALFIN1 ->MYB52(2)                              <---------ZAT2      --------->ANAC58 ->MYB55(2)                              --------->ZAT2--------->ANAC58 -AtMYB61                              <-----------RAV1(2)   --------->ANAC58 --------YAB1           ------->TEIL  --------->ATERF1(1)    --------->ANAC46                    <--- --------WOX13(1)<-----------RAV1(2) ------>NtERF2     --------->ANAC58       ----------->HVH21  *TSS   gattaatgcaatggacagtccagatgtattttagtaaggggccagccgagaagtctcaagcacaaacaacactctctcttgtgacaaaacaaactcataa  20184600                                                                             <---------ANAC46                                                                             ----------->GT1                                                                           <---------At4g35610                                                                           <---------ZAT2                                                                           <---------ZAT14                                                       <<<<<<<<<<<<<<<<<LFY--------->At4g35610                ------->GAMYB                        <------ZmHOX2a(1)    --------->ALFIN1               --------->MYB46(3)        ----------->GT1                 --------->ZAT18            - --------GT1 ----------->RAV1(1)        <------ZmHOX2a(1)        <------NtERF2            <---------ANAC46   aacctttctctcttccaacagcaaaactctgaaattgacagaggagaaaaatggaggagacaatggccgaagaagggtgctgtgaaaatgttgagtcgac  20184700                                                                             --------->ANAC58                                                                             ==================bZIP_DOF                                                                             --------->TGA1a                                                                             ----------->HVH21                                                                             --------->ANAC58                                                                             --------->ANAC46                                                    --------->ANAC58        --------->SPL7                                                  =====================================bZIP_DOF   <--              ------>MYB46(1)                <---------ARR14(2)          --------->ANAC58         ---              ------>MYB83                  <------ZmHOX2a(1)            --------->ANAC58    <-------            --------->MYB46(3)          --------->LBD16                <---------ANAC58      <-------        <---------SPL7                <---------LBD16             <---------ANAC58           --------       <---------DEAR3(2)            --------->MYB52(1)         <-----------GT1     <----------DOF2   --------->ETT(2)                --------->ZAT18---------->DOF2 <---------ANAC58<---------At4g35610 ---------->HVH21                 <------ZmHOX2a(1) --------->ANAC58   <---------ANAC58   <---------At4g35610   gtttgacgacggtaccaactgtatttcgaagactgaggacaccggaggaatcgaaagcaagaggttttacttggctcgcacgacagcttttgagatgctt  20184800                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                               <-----                             --------->At4g35610                                       --------->ANAC46                             <---------At4g35610                                       --------->ANAC58                             --------->ZAT2                                ----------->RAV1(2)-------                        --------->ZAT2                     <---------------AGL15       --------->ANAC58 -------HSFB2a(2)       <---------ZAT2                    <-----------------AGL3    <---------WRKY18(1) ------>HSFB2a(2)       <---------At4g35610           <---------ANAC58 <---------At4g35610 ------>NtERF2 --HSFB2a(1)            --------->At4g35610           <---------ANAC58 --------->At4g35610--------->DEAR3(1) --HSFC1(2)            ------->TEIL        <----------DOF2<-----------------AGL2  <----------DOF2 ->HSFC1(2)        <---------TOE2(3)     <---------DAG2 <---------MYB52(1)----------------------->TaNAC69(2)   cgcgatagaggctacgaagttaatgaagctgagctctctctcactctttctgagtttcgttctgtttttggtgagaagcctgagcttgaacgcctccgta  20184900  Previous    Next  AGI:  At3g54480.1    Description:  SKIP5 (SKP1-INTERACTING PARTNER 5). Identical to F-box protein SKIP5 (SKIP5) [Arabidopsis Thaliana] (GB:Q94FT2;GB:Q3E7R9;GB:Q9FPG4;GB:Q9FV00;GB:Q9FYV5;GB:Q9M1H9); similar to unnamed protein product [Vitis vinifera] (GB:CAO42910.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 20181663    to: 20184394    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g54490.1    Description:  eukaryotic rpb5 RNA polymerase subunit family protein. similar to eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana] (TAIR:AT3G57080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42914.1); contains InterPro domain DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); contains InterPro domain RNA polymerase, subunit H/Rpb5 C-terminal; (InterPro:IPR000783); contains InterPro domain RNA polymerase, Rpb5, N-terminal; (InterPro:IPR005571) Range:  from: 20184597    to: 20186440    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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