Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------YAB1                                                                 =================================HOX2a_HOX2a                                                                 ------>ZmHOX2a(2)                  -                                                                <------ZmHOX2a(2)                   <                                                                ==================================HOX2a_HOX2a           --------->ANAC46                                    <---------ARR14(2)                   <      --------->ANAC46      --------->At4g35610                <---------ARR11(3)                  <-    <-----------GT1         <---------At4g35610                --------->AGP1                      -- <----------DOF2--------->ANAC58    --------->HSFB2a(2)        <---------ARR14(3)                  <- -------->TOE1(3)          ----------->RAV1(1)                 --------->ARR14(2)                  -- -------->TOE2(3)      <------ZmHOX2a(1)          <---------ALFIN1     --------->ICU4         ------- ----->P ----------->RAV1(1)--------->ZAT2      ----------->RAV1(1)    <---------ATHB12       <------ ----MYB52(2)   --------->ANAC58    <---------HSFB2a(2)  <-----------GT1--------->YAB1     <--------- --HVH21 <---------ALFIN1--------->At4g35610 --------->ANAC58  --------->ARR14(3)          ------>ZmHOX2a(1) --TGA1------->GAMYB --------->ALFIN1        --------->ANAC58  --------->ARR11(3)        ------>ZmHOX2a(2)   aacctttaaccccacagcacgaagaggagcagcagtctcgagaacagaagcaccactagttacaagatcttcaattatcaaacaagtttgatccttttcg  20180900                                                 --------->LBD16                                                 ------>NtERF2                                                 <------NtERF2                                                ----------->RAV1(1)                                                --------->RAP2.3(2) --------->GLK1(2)                              --------->RAP2.6(2) -------->KAN4(2)                               --------->DEAR3(1) ---------GLK1(2)                              <---------LBD16 ---------ARR14(2)                           --------->ANAC58 --------HSFC1(2)                            --------->ANAC58 ------->HSFB2a(1)                           --------->ANAC46 --------HSFB2a(1)                          --------->SPL7 ------->HSFC1(2)                         <---------SPL7--------->YAB1                  --------->ALFIN1 -->HSFB2a(2)                             ------>ZmHOX2a(1)                         <---------ZAT14 ---HSFB2a(2)                   ----------------------->TaNAC69(2)                 ----------->RAV1(1) -DOF2        <----------DOF2   <----------DOF2--------->RAP2.3(1)<---------YAB1   <<<<<<<<<<<<<<<<<LFY   aagattccttcaatagctttagatgttccatagtctttaatctccttacgccgcataagcatagggataccattggaaacagagacaacagtggcgatag  20181000                                  --------->HSFC1(2)                                  --------->HSFB2a(1)                                  <---------HSFC1(2)                                  <---------HSFB2a(1)                                 <---------TOE2(2)                                 <---------TOE1(3)                          ------>ZmHOX2a(2)                            <-----------HVH21                              <------ZmHOX2a(2)                        ----------->HVH21                                 <---------ARR14(2)            <------ZmHOX2a(1)    <---------TOE1(2)                        <---------ARR11(3)          --------->ANAC58 <---------O2                                   --------->ARR11(3)          --------->ANAC58 --------->O2       --------->ALFIN1            --------->ARR14(2)      <---------ZAT6 --------->DEAR3(1)    --------->DAG2                 --------->AGP1  <---------ZAT14 --------->AtMYB61    <---------HSFB2a(2)               --------->GLK1(1)  --------->ZAT14 ----------->RAV1(1)  --------->HSFB2a(2)               <---------GLK1(1)  --------->ZAT18--------->ANAC46<---------TOE2(3)        --------->CCA1(2)--------->CCA1(2)        -   ggagagcagtgtaaggaacaccacagacgacgtcgaaggttgcagaaggtggaagagaagagatgagagtttgagagatctgtgttaagagggatggata  20181100                                                                                         <---------At4g35610                                                                             --------->DEAR3(1)                                                                            --------->RAP2.3(1)                                                                            --------->ATERF1(1)                                                                            <------NtERF2--------->ZAT2                                                                           ------>NtERF2 --------->At4g35610                                                                           <---------RAP2.3(1)                                                                           <---------ATERF1(1)                                                                          <---------DEAR3(1)                                                                          --------->DEAR3(1)                                                                         --------->RAP2.3(1)                                             --------->CCA1(2)           --------->ATERF1(1)       <-                                            <---------GLK1(2)           <---------ATERF1(1)      ----                                      --------->GLK1(2)                --------->ANAC46  <---------ZAT2                            --------->LBD16 --------->ARR14(2)        <---------At5g28300----------->RAV1(2)                            ----------->GT1 <---------ARR14(2)        <---------LBD16   ------->TEIL -------->CCA1(2)         <---------LBD16 --------->LBD16            <-----------GT1 --------->AtLEC2   agagacgatgagacgaaggtcgatgtaaaccggagaaaagattccagatttgagcttgaaattgccgaatttcacggcgccgatttcatgcagctggaga  20181200                                                                                   <---------ZAT14                                                                                   --------->ZAT14                                                               <---------ARR14(2)*TSS                                                              ------>NtERF2  <<<<<<<<<<<<<<<<<LFY                                      --------->HSFB2a(2)    --------->ZAT18--------->ZAT14                                   <----------DOF2           <---------ZAT18<---------ZAT14        <---------AtLEC2      --------->At4g35610          <---------At4g35610<---------ZAT14    <---------ANAC58          <---------At4g35610          --------->At4g35610--------->ZAT14    <---------ANAC58         <-----------RAV1(1)  <---------ARR14(2)        <---------ZAT18       <-- --------ICU4              <---------At4g35610    --------->ARR14(2)        --------->ZAT18     <---- ----->GLK1(2)----------->HVH21<-----------------AGL2   ---------->DOF2--------->MYB46(3)--------->ALFIN1   atcagtgcttccatggctgacattttttcttctgctgcttttggaatcggagaattcgataagcggacttggaacgactgcacactggagagtgttggct  20181300                                                        <---------ANAC55(2)                                                        ----------->GT1                                                  --------->AHL20(2)                                              <---------AHL20(2)                 <----------DOF2        <---------TOE2(3)                     --------->AHL20(2)             --------->YAB1     <----------DOF2                         <---------AHL20(2)            <-----------GT1 ---------TBP        <---------YAB1       <---------AHL20(2)              <-----------GT1 ------DOF2     ---------->ID1  ------------>CBF  <---------AHL20(2)      --------->YAB1   ttatatactttaggttttgtcttatttttggtgtttcaatgtttttatttattttaatatgtaaaattattcgtatttatcatcttttatgcattcagtt  20181400                  <-----------ARR10                  --------->GLK1(2)                  --------->ARR11(3)        <---------AHL20(2)                   <---------AHL20(2)                  <---------ARR11(3)        <-----------GT1                   --------->ARR11(3)                 --------->RVE1(1)     <---------AHL20(1)       <---------YAB1--------->AHL20(1)            ------>ZmHOX2a(1)          --------->AHL20(2)   <---------DAG2    <---------ARR11(3)    -           --------->TOE2(3)           <---------AHL20(2)   <----------DOF2   <---------AHL20(1)    <   ttcgttttattttcctaaaaaatctactctgaatatgtcattttatttacattttagaaatactttttcattgtatagaatatttttttgttgaagtcat  20181500                                                                                                    -                                                                                                    <                                                                                                    <          <---------MYB46(3)      --------->DAG2                                           <---------ARR11(3)          <-----------RAV1(1)    ---------->DOF2                                          --------->CCA1(1)    ----------->RAV1(1)       --------->YAB1                                <---------AHL20(2)      -   --------->REM1(1)         <---------YAB1                              --------->AHL20(1)--------->GLK1(2) -------->ETT(2)      <----------DOF2         <-------GAMYB   --------->GLK1(2)           --------->RVE1(1) ---------ETT(2)   <---------ARR11(3)        <-----------RAV1(1)         <---------AHL20(1)--------->ARR11(3)   tgtctacaacaattgttgcaatttctttactataataaagctgttttctgttgcattgtttgaaattctctctaatattttttgagagaaaaaaatctct  20181600              --------->ZAT14              <-------TEIL   --------->YAB1              <---------ZAT14             --------->CCA1(2)     --------->YAB1                      --------->ARR11(3)   <---------AHL20(2)                   --    <---------YAB1                       --------->ARR14(2)  --------->YAB1                     ----- -------->AHL20(1)                   ---------->DOF2      --------->AHL20(2)                  ------- ---------AHL20(2)            --------->YAB1             --------->ICU4                       <------ ---------AHL20(1)     <-----------GT1   <---------ARR14(2) <---------YAB1                   -------- -------->ARR11(3)---------->DOF2--------->YAB1   --------->At4g35610                <---------------   aatattttgataacagtgaagaaagaaaccatttatcacaaaagatacactaagcagaaattataaaaatccaattgaaatgaattcggcaattcgtcct  20181700        <---------ICU4   <------ZmHOX2a(1) -------->DOF2 ->ZmHOX2a(1) ---------->AGL1                                                                                 <--- -----------AGL1                            <-----------HVH21                                    ---- -->ID1--------->ICU4   --------->YAB1 <------ZmHOX2a(1)                    <---------ATHB12    <---- ------WRI1       --------->YAB1   ---------->DOF2                ---------->DOF2     <------ZmHOX2a(2)   aaaaaggacattatttctgaacataataagcatacaacaaaggacctgtctggtcttaaggggaaacacaaagtacaaatgaagatggatcatttcccat  20181800  Previous    Next  AGI:  At3g54470.1    Description:  uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS). Identical to Uridine 5'-monophosphate synthase (PYRE-F) [Arabidopsis Thaliana] (GB:Q42586;GB:Q9M1I0); similar to unknown [Populus trichocarpa] (GB:ABK95961.1); similar to UMP synthase [Nicotiana plumbaginifolia] (GB:AAF86340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42900.1); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase, conserved site; (InterPro:IPR002375); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain Orotidine 5' (InterPro:IPR014732); contains InterPro domain Orot Range:  from: 20179073    to: 20181281    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g54480.1    Description:  SKIP5 (SKP1-INTERACTING PARTNER 5). Identical to F-box protein SKIP5 (SKIP5) [Arabidopsis Thaliana] (GB:Q94FT2;GB:Q3E7R9;GB:Q9FPG4;GB:Q9FV00;GB:Q9FYV5;GB:Q9M1H9); similar to unnamed protein product [Vitis vinifera] (GB:CAO42910.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 20181663    to: 20184394    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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