Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <------ZmHOX2a(2)                                     <---------ARR11(3)                                     --------->ARR11(3)                                 <------ZmHOX2a(1)                               <---------TOE1(3)                          <----------DOF2      ----------->GT1--------->AHL20(2)                                         --------->ICU4 ------->DOF2--------->AHL20(2)<---------TOE2(3)           <----------DOF2   <------ZmHOX2a(1) --DOF2--------->YAB1<---------AHL20(2)              ---------->DOF2  <---------MYB46(3)        <----   aaaagaaaatgaaaataaaacaattaaacttttaaggaagatcagataagtagttgaaagcctttaatctagtagttgaggactgatgagattaagtagt  20155500                               --------->WOX13(1)                     ------>ZmHOX2a(2)                               --------->ARR14(2)                    <---------GLK1(1)                                <---------ARR11(3)                    <------ZmHOX2a(2)                                --------->ARR11(3)                    --------->GLK1(1)                                --------->ARR14(3)                   --------->ARR11(3)                          ----------->RAV1(1)                   <---------ARR11(3)                      --------->ANAC46                   <---------ARR14(3)                      --------->ANAC58                   --------->GLK1(2)                       --------->ANAC58                   <---------ARR14(2)                    <---------ALFIN1                   <---------AGP1                       --------->ZAT14                  <------ZmHOX2a(1)                     <---------ZAT18               =============HOX2a_HOX2a                 <---------ZAT14                             -         <---------ANAC58      --------->YAB1          ------>ZmHOX2a(1)                           --         <---------ANAC58   --------->TOE2(3)        ======================RAV      <----------DOF2--  ==========================HOX2a_HOX2a              ----------->RAV1(2)      <---------CCA1(2)    <<  =========================HOX2a_HOX2a        <---------At4g35610    --------->GLK1(2)             --  <------ZmHOX2a(1)--------->ARR14(2)         --------->At4g35610    <-----------ARR10            --- -----ZAT6     <------ZmHOX2a(1)  --------->YAB1    ------>ZmHOX2a(1)<---------ARR14(3)           <--   gagaggaagaggcttgaggaggatctctaacattaatcaaactctctcatcttcctcctgcactccaacaaaatcttctcgtctctctttaaaccaatag  20155600                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                                              --------->At4g35610                                              --------->GLK1(1)                                             <---------ARR14(2)                                             <---------ARR11(3)                          ------>NtERF2      --------->ARR14(2)                         --------->ANAC58    --------->ARR11(3)                               <------                         --------->ANAC46    --------->GLK1(2)                         <------------CBF                         --------->ANAC58    <---------ARR14(3)                       --------->ATHB51          <-------MYC3 <---------ALFIN1      <-----------ARR10                        --------->ATHB12          ------->MYC3--------->DEAR3(1)     --------->ARR14(3)                <---------ANAC58 ----------->CBF      <---------MYB55(2)     <---------AGP1                    <---------ANAC58  ---- ------->ANAC46       --------->MYB46(3)    <------ZmHOX2a(1)    ------>ZmHOX2a(2)    -------->ATHB1 ------->ANAC58      ------>MYB83           ============================HOX2a_HOX2a  <---------YAB1 <<<<<<<<<<<<<<<LFY  ------>MYB46(1)--------->ANAC58     <---------YAB1        <---------ANAC46<----- ------->ANAC58    --------->DEAR3(1) ---------->DOF2   --------->KAN4(2)      <---------AtLEC2<----- ------>ZAT18      --------->AtMYB61--------->ANAC46--------->At4g35610    <------------CBF   ------- -------ZAT18      <---------ALFIN1 --------->ANAC58<---------At4g35610 <-----------HVH21     <------   cacacaatggcacatgaaacaccacccacgcccagtacaagaaagaggatctgcagcttattcttgatcgtttgtgtcattgcatgtattattggtttgg  20155700                                       --------->DAG2                                      ---------->DOF2                                   ----------------->AGL2                                   <------NtERF2                                   ----------------->AGL3                                  ----------->RAV1(1)                                 --------->RRTF1(2)                                 --------->RAP2.3(3)                                 --------->RAP2.3(2)                                 --------->DEAR3(1)                                 --------->RRTF1(3)                                --------->RAP2.3(1)                                --------->RRTF1(1)                                --------->ERF1                                --------->ATERF1(1)                               <---------RAP2.3(1)      <-----------GT1          --------->LBD16  <-----------TBP              <---------ATERF1(1) ---MYB46(3)                  <---------DEAR3(1) ------>ID1                  --------->SPL7 -MYB46(1)                   <---------LBD16 -MYB83                    <---------SPL7                                                           - -->MYB59                  <-----------HVH21                                                      <-- ---AtMYB61     --------->MYB46(3)------>NtERF2             ------->TEIL                          ---   tcgtttttatactcatcaacgaatgcaaacgtccggcgccaaaagtagaattagcttctatggacttcatggtgcttaatatcacatagactcgtcttag  20155800                                  ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)                                 =============HOX2a_HOX2a                                --------->ARR14(3)                                <-----------ARR10                                --------->ARR14(2)                                <---------ARR14(3)                                --------->AGP1                                <---------ARR14(2)                                <---------AGP1                                --------->ARR11(3)                                <---------ARR11(3)                               <---------CCA1(2)                           --------->AtLEC2                        ======================HOX2a_HOX2a                        ------>ZmHOX2a(2)                       <---------GLK1(1)                       =======================HOX2a_HOX2a                       <------ZmHOX2a(2)                      --------->ARR11(3)                      <---------ARR11(3)                      --------->ARR14(2)        ----------->TBP    --------->ALFIN1  <---------ARR14(2)       XXXXXXXXXXXXXXXXXXXX>MIR861-3P                   <---- --------->DOF2      ====================HOX2a_HOX2a                                          ------- -------ZAT14        <------ZmHOX2a(1) ------>ZmHOX2a(1)           <----------DOF2 <----------DOF2 ------>ZAT18        ===================HOX2a_HOX2a      <---------REM1(2)  <-------TEIL     --------   tgcaaagtgggatttgtccataaggatccctgcagatcttcctggtgactatatatgtcttcaaggagactttcaagtttcatttctttacaagaatgtt  20155900                                              --------->TOE1(2)                                             --------->MYB46(3)                                            -------->P                                           ------->GAMYB           <---------GLK1(2)                                          <---------MYB111(2)     --------->At4g35610       --------->ANAC46    --------->At4g35610------->GAMYB       <---------ZAT2    <---------MYB46(3)     <-----------GT1---------->DOF2       --------->MYB46(3)      <---------At4g35610         ------>NtERF2   <----------DOF2--------->ANAC46      <-----------GT1 --------->At4g35610       <-------GAMYB -------GT1  --------->AtMYB61     <---------YAB1       <---------At4g35610   --------->GLK1(2) ---------------->TaNAC69(2)    --------->ZAT14    <---------ARR14(2)    ---------->DOF2     -------- --->GT1  <---------ALFIN1 <---------At4g35610--------->TOE2(2)------>ZmHOX2a(1) <-----------RAV1(1)   actctctttacctcacctccacaaaagtaagctgtttactattaacaacctccgataccgctgtcctcagcttcttaaagtttctgttgttgtctccgac  20156000                                       ---------->DOF2     <----------DOF2                                    <-----------HVH21 <---------MYB52(2)                                  <---------ARR11(3) ----------->GT1                           ------                            <---------YAB1           --------->ANAC58              --------------->AGL15                            <---------HSFB2a(2)  --------->ANAC58                  <---------------AGL15   --------->TOE2(3)  <-------TEIL--------->ARR11(3) --------->ANAC58             ----------------->AG ->DEAR3(1)--------->ATHB12 <---------TOE2(3)    --------->ANAC58                 ----------------->AGL1   gaaaacattagttcgattggaacatacattatggaagatgtcaaagagaagaagcaagtaacttttggattgcagttttctcttaccgattgcagaaaaa  20156100                                                               <---------REM1(1)                                                        <------ZmHOX2a(2)                                                        <---------At4g35610                                                        --------->At4g35610                                                       --------->GLK1(2)                                                       <---------ARR11(3)                                                       <---------ARR14(2)                                                       <-----------ARR10                                                       <---------AGP1                                                       --------->ARR14(2)                        ----                                                      <---------ARR14(1)                        -----                                                      <---------CCA1(2)<------NtERF2--------->ANAC58                                                     --------->LBD16 <---------ANAC58           <----                   <---------YAB1        <---------TOE2(3)   <---------At4g35610    --------->ANAC58            <---------YAB1               <---------TOE1(3)   --------->At4g35610  ===================      <------ZmHOX2a(1)      --------->ZAT14        --------->ANAC46 <---------ANAC46       ---------  <---------MYB52(1)      <---------ANAC46         <---------LBD16   <---------ANAC58       <-------- ---->DOF2--------->CCA1(2) --------->ALFIN1 <-------TEIL------>ZmHOX2a(2)        ---------->DOF2----   agacgttaggagttatgagttatgcatgctgtggagtcaccttgaggttcgaacccggatctgagatgaaggcgtctgtgtttggaaagcatccaaggta  20156200                    <-----------HVH21                    <-----------TGA1                   --------->ANAC46       ----------->HVH21 --------->ANAC46                       --------->ANAC55(2) ----->ANAC58      --------->ANAC58                             <---------ANAC55(2) ---->ZAT18        --------->bZIP60(2)                   <-----------GT1 ---TEIL           --------->ANAC58 <---------YAB1    --------->CCA1(2) ============================bZIP_DOF                --------->ARR11(1)        <---------AHL20(2) >ANAC46           --------->TGA1a <---------TOE2(3) <---------ARR11(3)    --------->ATHB12 -TOE1(2)          <---------O2 --------->ZAT14    --------->ICU4  --------->MYB52(1) ----->ANAC58      --------->O2 <---------ZAT14    ----------->ARR10     <----------DOF2       <-----   cacaaatttctgaccaagtccacgtcaacaccagtataatgttagagtttgcaaagatttgacattacttaagggctttattgaattagagatttagttt  20156300                           <---------DAG2                                          --------->YAB1                   <------MYB46(1)                                         <------ZmHOX2a(1)          <----------DOF2  <----------DOF2                               >>>>>>>GRF7 ----AHL20(2)      <------MYB83                        <-----------GT1<-----------HVH21      --------   atttgtaaatgactttagatttggttcgactttatttagggtctaaagtttattgtataactgtttaatatttgtcaggacttaatgaagatgtaatgtt  20156400  Previous    Next  AGI:  At3g54410.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70040.1); contains InterPro domain Protein of unknown function DUF1163 (InterPro:IPR009544) Range:  from: 20155896    to: 20156213    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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