Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->HSFC1(2)                                              --------->At4g35610                             <---------ANAC46 <---------HSFC1(2)                             <---------ANAC55(2)                             --------->ANAC55(2)                             <---------ANAC58 --------->ZAT2                             <---------ANAC55(1)                                          ---------->DOF2                       <---------AHL20(2)     <---------HSFB2a(1)                        <---------WRKY12              --------->ANAC58                --------->HSFB2a(1)             <---------ANAC46              --------->ANAC58               ----------->ARR10              <---------WRKY18(1)  <--- ----------->GT1   --------->ICU4    --------->ZAT6                      <---------ANAC58<---------WRKY38(1) ---->ANAC46 --------->DAG2  <---------ANAC58<-----------ARR10           <---------ANAC58<---------WRKY45 ----LBD16  ---------->DOF2<-----------GT1  <------ZmHOX2a(1)         <------ZmHOX2a(1)<-----------HVH21   ggagggtataactataaagcaatatttagttacctgtttacactgaggagcttcgcattgaagagtacgagaggagcttgacttggaagggtcaaagaga  20153200                             --------->ANAC58                             --------->ANAC58      <---------ANAC58                   --------->RAP2.3(3)             <---------ANAC58                 ------->GAMYB              <-----------TGA1                --------->ANAC46            <-----------HVH21                --------->ANAC58          --------->At4g35610                --------->ANAC58       <---------ZAT2              --------->MYB52(1)       --------->ZAT2                                 --------->ALFIN1             <---------WRKY38(1)      --------->ANAC46                       <----------CDC5         --------->MYB46(3)  --------->ANAC46 --------->ATHB12      ------->PIF5     <---------MYB52(1)   <------ZmHOX2a(1)------>NtERF2     --------->ANAC58              <-------PIF5   <---------DEAR3(1) ------ZAT14--------->MYB46(3)        --------->ANAC58 <---------ZAT6       --------->At4g35610   acagaggaagaacagccaacgcagccagaacaaggaatccaagcagcgtcattgctagtgtcaagagccacgagcatgggctgagccggtgtcccgatgt  20153300                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                   --------->MYB52(1)                                                             <---------GLK1(1)    ----------->HVH21                                                           --------->ATHB12     <---------ANAC58                                      <xxxxxxxxxxxxxxxxsmallRNA(s)------>ZmHOX2a(1)                                   <---------ETT(1)        <---------ICU4 <------NtERF2                                   ----------->HVH21      <---------YAB1 ------>NtERF2                                  --------->DEAR3(2)   --------->ICU4--------->ANAC46         <------ZmHOX2a(1)   ----------->HVH21   ----------->HVH21       <-------GAMYB --------->GLK1(1)  <---------ANAC58   tagccctcacgatgtaagtcgggctctgaacgatggcccgaccagaggcgattggaactgatgatttcctaacgccagcgaggcttgacaagtataggaa  20153400                                                                                         <---------TOE2(3)                                                                                     --------->CCA1(2)                                                                                     <------ZmHOX2a(2)                                                                                     =============HOX2a_HOX2a                                                                                    <---------AGP1                                                                                    --------->AGP1                                                                                    <---------ARR14(2)                     --------->ARR14(2)                                             --------->ARR14(2)                     <-----------ARR10                                              --------->ARR11(3)                     <---------ARR14(2)                                    <---------ALFIN1<------ZmHOX2a(1)     <---------CCA1(2)<---------At4g35610                             --------->ALFIN1------>ZmHOX2a(2)   <---------DAG2    ------->TEIL             <---------AtLEC2 <-------GAMYB        <---------ARR11(3) ------->TEIL       <---------CCA1(2)       <---------YAB1    <---------ZAT6       <---------CCA1(2)<   acgagccttatcttgaagaagtgtatctgcccatgaaacagaagttttgaatggagaacatagactgttaatgtggaacactcttagatctgaggaatgg  20153500                                                                                  --------->ARR11(3)                                                                      <---------YAB1                                                                     ------>ZmHOX2a(2)                                                                    <---------GLK1(1)        --------->ZAT14                                             <------ZmHOX2a(2)        <---------ZAT14                                             --------->GLK1(1)    --------->ATHB12                                               --------->ARR11(3)   <---------YAB1         --------->GLK1(1)                  --------->CCA1(2)    <---------ARR11(3)< ----------DOF2 <---------TOE2(3)               <-----------GT1    <---------ARR11(3)           <----   ctcttttcattgcagtttatggattcagatttcaagattaagagagagattaacaaaatcaagagatgggatctcattgtttaagaccttgattttgtct  20153600                                                                           ----------->GT1                                                                     --------->REM1(2)                                                                    --------->ALFIN1                    *TSS                                        <---------ANAC58          <---------ZAT6   --------->ALFIN1            --------->CCA1(2) ---------->DOF2  <---------AHL20(2) ---------TOE2(3)  <---------ANAC46      <-----------TBP        <---------ANAC58        ----------->TBP ------DOF2        <---------ZAT6        --------->AHL20(2)   <---------YAB1     --------->YAB1    --   ttgtggtttctagtgtttgtagagtgaatgtgtgagtgtgtgtttatatagtgagtgatatacgatgagtgtgtagaaagtaataagaatataaaaatga  20153700                                                                                         <---------ICU4                                                                                    <----------------                                                                                  --------->ANAC46                                                                                  --------->ZAT6                                                                                <---------ALFIN1                                                                               <---------ZAT18                                                                               --------->ZAT18                                                            <-----------GT1    <---------WRKY38(1)             <---------CCA1(2)                          <---------MYB52(1)    --------->TCP16(2)         <---------ANAC46                              <-------GAMYB         <---------TCP16(1)    <---------ANAC46                                <-----------GT1          <---------PCF5 --------->ALFIN1                                 <---------AHL20(2)  <----------DOF2 --------->YAB1 ------->ALFIN1 <---------ANAC46              ------>ZmHOX2a(1)      <---------MYB52(1)<---------YAB1   agagtggggttttgtatatcgtagagagaacagtctgtattccatctcctattttttcgttgtttctatctgttttttgggtccacactaatattggctc  20153800                 <-------GAMYB              <---------ANAC58              <---------ANAC58       --------->ETT(2)                                     --------->ICU4       --------->YAB1       <---------ETT(2)                 <---------ICU4 ----------->GT1           ----------->GT1 -AGL3 >>>>>>>>>>AtTINY2    --------->AtLEC2        --------->ALFIN1    <---------YAB1   tcttctctatcgacatgcgcgttgctctccatccacaaaaactcattacccaaggtgttgtaatttttagactcattatcgaatggtaatcaagtcaaac  20153900                  ----------->GT1                            --------->YAB1             <---------AHL20(2)                             ----------->GT1<---------YAB1            <---------WOX13(1)                       ----------->GT1   <---------ARR14(2)       <---------At4g35610                        --------->GLK1(2)    <---------GLK1(2)      <------       <---------ZAT2                          --------->AHL20(2)      --------->ARR14(2)    <-------   tggaagtctagctgattaatcggtatattgactcttagcaaaaaaaaaaaaaaatcggtatattgataaaaccgattctcattctaacaaaatagttaca  20154000                                                        <---------AtMYB61                                                      <---------ANAC58                                                      <---------ANAC58                                                      <---------ANAC46          --------->GLK1(2)                                                    <---------ZAT14         <---------HSFB2a(2)                                                   --------->ALFIN1         --------->LBD16                                                  --------->REM1(2)         --------->HSFB2a(2)                                                 --------->ALFIN1         ------>ZmHOX2a(2)                                                ------->MYC3             <------ZmHOX2a(2)                                                <-------MYC3             --------->CCA1(2)                                                ------->MYC2            <---------ARR14(2)                                                <-------MYC2            --------->ARR14(2)                                               <---------ANAC58         --------->AGP1                                               <---------ANAC58         --------->ARR11(3)                                            ====================================HOX2a_HOX2a        --------->RVE1(1)                   <------ZmHOX2a(1)           <---------ARR11(3) <---------YAB1               ----------->GT1  <---------ANAC46        --------->GLK1(1) ---At5g28300                --------->DAG2 =====================================HOX2a_HOX2a ----GT1--------->CCA1(1)--------->YAB1  --------->At4g35610           <---------GLK1(1)      <------   gttttgataaatatccaatttatacaacgataagggaaatagcagaggaacgtgtggagtggtattgtttaagagatccgagaaactgagttgaattttt  20154100  Previous    Next  AGI:  At3g54400.1    Description:  aspartyl protease family protein. similar to pepsin A [Arabidopsis thaliana] (TAIR:AT5G07030.1); similar to unknown [Populus trichocarpa] (GB:ABK93780.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Peptidase A1; (InterPro:IPR001461) Range:  from: 20151036    to: 20153620    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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