Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->ARR11(3)                   --------->HSFB2a(2)                                              <-----------GT1    ---------->DOF2        <---------LBD16            --------->TOE1(2)              ----------->GT1     --------->At4g35610     <---------LBD16           --------->ANAC58           ---------->DOF2 --------->TOE2(3)            --------->WOX13(1)           --------->ANAC58        <---------TOE2(3)<---------ARR11(3)  <------ZmHOX2a(1)<---------HSFB2a(2)   atagggtttaagaacgtaagagaaacagaaaatgtttaagaaaaggagttacaataccttgaatcagcaaagaaggatgttttgtcaatctcgggaacaa  20137400                                                                           --------->ATHB12                                                                           --------->ATHB51                                                                           -------->ATHB1                                                                          <---------AHL20(2)                                                                          --------->ICU4                                                                       --------->AHL20(2)                                                                   ----------->GT1                                  <-----------HVH21            --------->ARR14(2)              ------                   --------->ANAC58                            <---------ARR14(2)             <------ZmHOX2a(2)                   --------->ANAC58                           <------ZmHOX2a(1)          ---------->DOF2         <-------TEIL            --------->bZIP60(2)       --------->YAB1 --------->AHL20(2) <-------      ----------->GT1 ----------->RAV1(1)             <---------ANAC55(2) <---------ATHB51   --------   caagagtgaggttcaatagcctagcaacagtaaccatgtcacaaaactggaacaacaagtatcaggatttggataaattattgaaattagacaaagatcg  20137500                                                                                --------->ATHB12                  ---------->DOF2        <-------GAMYB                         <---------AHL20(2)          <---------AHL20(2)      <---------GLK1(2)                            <---------YAB1 -------       ----------->GT1       --------->MYB46(3)                            <---------GLK1(2)  <------  --------->AHL20(2)     <---------MYB52(2)                       --------->CCA1(2)          -------- ----->GT1--------->AHL20(2)------->TEIL <---------At4g35610     <---------ARR14(2)   <----------DOF2 --ARR11(3)     <---------YAB1    --------->ARR14(2)             --------->ARR14(2)  <---------ANAC58 ->ARR11(3)     <---------TOE2(3) <---------ARR14(2)            <------ZmHOX2a(1)    <---------ANAC58   aaaaaaaaatagttaattaagaaagtgacgaaccacgattcgcagttgatttagtcagccattacaggatacaagtagaatttcattgctttggttatgt  20137600   ----------->GT1                                                                            <------   <------MYB83                                  --------->ANAC58                          ----------   <------MYB46(1)                 --------->ANAC58                                     --------->YAB1 -->ANAC55(2)                      --------->ANAC58 ------->TEIL<-----------GT1         <-----------GT1 ---ANAC55(2)         ----------->GT1    ---------->DOF2     --------->AHL20(2)      <---------GLK1(1) ->MYB59     <---------ICU4 <---------GLK1(2)    --------->ANAC58                    --------->bZIP60(1)   actgtaggtaaaaaatcaatactctcgttaaattctcaagctccaaagaagacgcacatacaattttttcgaaattctcacaagttgatatcacaattta  20137700                                                                    <------NtERF2                                                                   ------>NtERF2                                                                   --------->RAP2.6(2)                                                                  <---------RAP2.6(2)                                                                  <---------ATERF1(2)                                                                  --------->ATERF1(2)                                                                  <---------DEAR3(1)                                                                 <------NtERF2                                                                 --------->ATERF1(1)                                                                <---------ATERF1(1)                                 <------------MYB.PH3(2)        <---------RAP2.3(1)                                 <---------MYB59                <---------DEAR4(2)                                 <---------MYB52(2)            --------->ALFIN1                                 <<<<<<<<<<AtMYB44             <---------DEAR3(1)                                 <---------MYB46(2)           <------ZmHOX2a(1)                                 <---------MYB111(1)          --------->ATERF1(1)                            --------->ANAC58                --------->ALFIN1                            ----------->GT1                <------ZmHOX2a(1)                       <-                            --------->ANAC58             --------->ALFIN1                          --       --------->GLK1(2)  ---------->DOF2               <------ZmHOX2a(1)                       ----- ---AHL20(2)            --------->ANAC58              --------->ALFIN1                       -------- ----->AGL15            --------->ANAC58             <------ZmHOX2a(1)    <-----------GT1   ---------   tagatagagaatttagaaaactcaagacgaaagtaactaacttgagggaagaagaggaggaggaggaggcggcaattcactggctcgaattgaagagata  20137800                                                    <------NtERF2                                                  <---------DEAR3(1)                                                --------->LBD16                                               <---------HSFB2a(2)                                              <---------LBD16                        --------->AHL20(2)    --------->SPL7                       <-------MYC2        <---------ARR11(3)    ----------->HVH21--------->HSFB2a(2)                 ------->MYC3 --------ARR11(3)      <---------AHL20(2)<------------------SPL14                  <-------MYC3 ------->ARR11(3)--------->TOE1(3)       <-----------HVH21                   --------->DAG2 ---->AHL20(2)   --------->TOE2(3)    *TSS  <---------SPL7                  ---------->DOF2         < --->GT1--------->GLK1(2) <---------CCA1(2)<---------ETT(2)               --------->ARR11(3)     ---- -->GT1--------->RVE1(1)<---------AHL20(2) --------->ETT(2)     ---------->DOF2    ------->MYC2  ----   aaatctaaaaaatctgaaaccctaatttatatctgactgtctccgtcgtccggaggcgagagtgtgtaaagaagaagataaagcacgtttgagaatggaa  20137900                                                                                     --------->LBD16                                                                                    --------->LBD16                                                                                    --------->ANAC46            <---------GLK1(1)                                                       --------->HSFB2a(2)     <---------MYB52(1)                 <----------DOF2 --------->HSFB2a(2)         <---------HSFB2a(2) ------>NtERF2                <----------DOF2           <---------HSFB2a(2)        <---------LBD16 ---------ALFIN1           <-----------GT1        <---------DAG2                   <---------HSFB2a(2) ----->ANAC58          <---------AHL20(2)   <-----------GT1                        --------->HSFB2a(2) ----->ANAC58      <------------------------ANAC81<----------DOF2                 <---------LBD16  <-   cgacaccgttttggatatatgtgatttttttactttgctcttcttttaactcctttttctgaaactaaacttcaaatgcttatttcccggaaaaacagcc  20138000                 <-------GAMYB                <-----------RAV1(1)                --------->MYB55(2)                                                  --------------->AGL15                --------->MYB52(2)                                                  <---------------AGL15                <---------MYB46(3)               <---------ARR11(3)       ------->TEIL            <---------ANAC46               <---------YAB1             <---------------AtSPL3            <---------ANAC58             <---------At4g35610          --------------->AtSPL8        -            <---------ANAC58   <-----------GT1   --------->ARR11(3)   <---------------AtSPL8    -----     <---------ALFIN1       <---------AHL20(2)<---------WOX13(1)   <---------AHL20(2)           <---- ---------DOF2<---------MYB52(1)    <----------DOF2                --------->AHL20(2)         <------   tctttcaacacatttcgtttgttgttgtaatttatactcttttagatgatagatattagttcatattttttaaatgtacttctaaactaatattagtagg  20138100                              <---------AHL20(1)             --------->YAB1                     --------->AHL20(1)                      --------->ATHB12    <---------AHL20(2)     --------->AHL20(2)                <---------ICU4   <---------AHL20(2)<---------AHL20(1)                     <---------YAB1   --------->AHL20(2)<---------ARR11(3)                     --------->ICU4   <---------AHL20(1)--------->ARR11(3)      ------>ZmHOX2a(1)     --------->HSFB2a(2)            xxx -------->YAB1      <---------AHL20(2)      --------->TOE2(3)<--------HAHB4                       xxx ------>GT1     --------->AHL20(2) <---------AHL20(2)     <---------ICU4                     <------- --ZmHOX2a(1) --------->TOE2(3)<---------AHL20(2)         --------->YAB1<----------DOF2  <---------GLK1(2) ---TOE1(2)   <----------DOF2 --------->AHL20(1)         <---------ATHB12      <----------DOF2 <<<<<<   attaataaaatttgaactttaaatattttttatatattttataaatcctcagataatcaataatcatttctcgactttcatctttttctcaaattctcga  20138200                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              <---------ZAT18                                                                              --------->ZAT18                                                                              --------->ZAT14                                                                              <---------ZAT14                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                          --------->DAG2                                                                         ---------->DOF2                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   <---------SPL7                      <------NtERF2                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->LBD16                    <xxxxxxxxxxxxxxxxsmallRNA(i)                     <---------ANAC46                    --------->GLK1(2)                                --------->LBD16              ------>ZmHOX2a(1)   --------->TOE2(1)                  --------->RAP2.6(2)              ====================HOX2a_HOX2a                       <---------LBD16  ---------->ID1             --------->TOE1(3)   <------NtERF2             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <----------DOF2      <-----------RAV1(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   -------- xxxxxxxxxxxxx>smallRNA(i) ------>ZmHOX2a(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------DAG2 xxxxxxxxxxxxxxxxx>smallRNA(fl3) --------------->AtSPL8  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)-------- --HSFB2a(2) --------->TOE2(3) <---------ETT(2)     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <----------DOF2 <<<<<<<<<<<LFY     <---------ARR11(3)   <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  --------   caatggtttctttatcctcaaaaatctgatctgtcgtcgtactattcttgttcagttcaactcaatctatgccggaaaagtgcacttatcgctttacgcc  20138300  Previous    Next  AGI:  At3g54350.1    Description:  EMB1967 (EMBRYO DEFECTIVE 1967). similar to forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G75530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48269.1); contains InterPro domain Forkhead-associated (InterPro:IPR000253); contains InterPro domain SMAD/FHA (InterPro:IPR008984) Range:  from: 20133061    to: 20137838    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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