Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ----------->GT1                          <---------GLK1(1)                        ---------->DOF2                     <---------ZAT14                             --------->At5g28300 -------AHL20(2)     --------->ZAT14                            ----------->GT1        --------->AHL20(2) ---->AHL20(2)  <---------ZAT14--------->At4g35610     <------ZmHOX2a(1)            ----------->GT1 --->AHL20(1)   <------ZmHOX2a(2)         ---------->DOF2      --------->ZAT6    --------->LBD16 ----AHL20(1)  --------->ARR11(3)      --------->TOE1(3)     --------->MYB52(1)<---------LBD16 -->AHL20(2)   <---------ARR11(3)      --------->TOE2(3)  <------ZmHOX2a(1)  --------->GLK1(2)   atatatggaaaactatagatcactgtagaaatcagataaaaccctaaaacaccaagaggaggataacagtaaatcgcaaaatcgggagataaaatcacta  20121300                                                   --------->AHL20(2)                              --                                                   --------->YAB1                                  --                                               --------->ICU4                                 <------                   --------->ATHB51       --------->ANAC58                               ----------->GT1                  <---------AHL20(2)      --------->ANAC58                            <------MYB46(1)                  <---------YAB1     --------->DEAR3(1)           <-------MYC3        <------MYB83 --                --------->YAB1      --------->ANAC46 <---------YAB1                  <---------TOE2(3)      <---------GLK1(2)      <---------ICU4  ----------->RAV1(1)  ------->MYC3       --------->MYB59   atcgtatagaatcgcgatttataattgagaagaattacaccgaagcgcaacaattataaatcggaaaacgtgttcttatgctccgattaggttgaaaatc  20121400             ------>ZmHOX2a(2)             <---------DEAR3(1)            <------ZmHOX2a(2)           --------->ARR11(3)           <---------ARR14(2)           <---------ARR11(3)                                  --------->ANAC58       ---------->DOF2                                         --------->ANAC58     --------->AHL20(2)             ---------->DOF2   ==============================HOX2a_HOX2a     --------->YAB1           --------->LBD16         ------>ZmHOX2a(2)     <---------AHL20(2)      <---------HSFB2a(2)      ===========================HOX2a_HOX2a ------->ANAC46             <---------LBD16       <---------YAB1 ------->ANAC58        <-----------GT1         <---------ARR11(3)                    --------->ANAC46 -----ARR10--------->ARR14(2)--------->HSFB2a(2)--------->CCA1(2)            <------ZmHOX2a(1) ------->ANAC58        <---------AHL20(2)      --------->ARR11(3)         <------ZmHOX2a(1) XXXXXXXXX   gacgcaattaaaagatcggtgctatttacttccggaagaaaagtatagagatatgatcggagaagacgaaattgaaggaggaatcaaacgacgcatagca  20121500                                                               <---------TOE2(3)           ----------                                                            <---------REM1(1)          <---------ARR14(2)                                                       <------MYB83                    --------->GLK1(2)                                                       <------MYB46(1)                 --------->ARR14(2)                  ---------->DOF2                   <---------ANAC58                  <---------GLK1(2)         --------->At4g35610                        <---------ANAC58                 <------ZmHOX2a(1)      --------->At4g35610        --------->ICU4    --------->ZAT2            <---------GLK1(2) XXXXXXXXXXX>MIR834           <------ZmHOX2a(1)    <---------ZAT2<------ZmHOX2a(1)<---------LBD16   gtagcagtagcagaagaaacaaaagcgagagaggaatgagtaccttgagacttagcttggtgatgaaggattaggctcaaattctcaggaatctggtaat  20121600                                                             *TSS                                                             <---------MYB59                                                            --------->TGA2(1)<---------AHL20(2)                --------->ANAC58                            --------->bZIP60(1)               ------>MYB46(1)                --------->ANAC58                            <---------bZIP60(1)       --------->YAB1            <-----------HVH21 <---------DAG2             ----------->HVH21   --------->AHL20(2)       ------>NtERF2          <----------DOF2   <------ZmHOX2a(1)           <---------WOX13(1)------>MYB83 --------->At4g35610   <---------ZAT6  <----------DOF2 --------->CCA1(2) <---------YAB1  <-----------GT1 ->GT1--------->DEAR3(1)  <-----------GT1    <-----------RAV1(2) --------->TOE2(3) <----------DOF2   atcagacgacgacgagtcacgactagttttagctttttaggcttttagcaggagatgatatgacataacttaatgctgattaattctttaatcaccaaat  20121700               <---------LBD16               <-----------------AGL1             <-----------GT1         <---------WOX13(1)        >>>>>>>>>ARR2        <------------CBF       --------->ATHB12      <---------YAB1   <<<<<<<<<<MYB80  <------MYB46(1)  <---------ARR14(2)           <------------CBF  <------MYB83 <-----------------AG         --------->MYB59 --------->GLK1(1) <---------AtMYB61 --------->ARR14(2) ---------->DOF2       <---------GLK1(1)                -------- --------->MYB59 --------->LBD16    <---------YAB1         --------->ARR14(2)             <----------DOF2   ggtttggtttgattgtttccggtttcggttctcggtttatgaaagttagctattgaaatcggaaacccattctatttcgccttggtttgatactttgatt  20121800                          <---------ANAC46                         <---------LBD16                      <---------AHL20(2)                                                  --------->YAB1                    <---------YAB1                                                        <---------ICU4                   <---------AHL20(2)                                                    <---------ATHB12                 <---------YAB1                            <------MYB83                --------->WOX13(1)             <----------DOF2                               <------MYB46(1)            <---------AHL20(2)          --------->ARR14(2)                              --------->MYB59             --------->AHL20(2)          <---------ARR14(2)                     <---------ARR14(2)            ----------->GT1      -     --------->MYB52(1) <-----------GT1          --------->ARR14(2)           <---------MYB46(3) ----    <-----------GT1<---------AHL20(1)          --------->At5g28300    <----------DOF2--------->AHL20(2) ->ATHB12<---------MYB52(1)   <--------P  ----------->HVH21<---------ANAC46  <---------ANAC46 -------   tggatattaccggttctttattattttttcgggttagaattgaaatgaccgtaactgtgttcggtatggttcctttgtgatgggtaaattaatcatcagt  20121900                                                               ---------->DOF2                                                            --------->ANAC58                                                            --------->ANAC58                                ----------->RAV1(2)     --------->ANAC58                                --------->At4g35610     --------->AtLEC2                              <---------ALFIN1          --------->ANAC46                          <-----------HVH21             --------->ANAC58                      <------                         <---------At4g35610            --------->ANAC55(1)                   <------ -------->AHL20(2)   <-----------GT1                 <-------TEIL                      --------->AHL20(2) ----->YAB1     <---------AHL20(2)               --------------->AtSPL3             --------->YAB1 -->WOX13(1)----------->GT1<------ZmHOX2a(2)     <---------------AtSPL8          --------->TOE2(3)<--   cataaattctgaatttgttaaatttacagatcacacctgaaaactgatgaaaacgtacacgcaaacaaagttgattatctaaacgataatcaaatacttt  20122000                           <---------YAB1                  <---------ARR11(3)                                   ---------->DOF2       ---------->DOF2----------->GT1                                --------->At4g35610 ----DOF2         --------->ARR11(3)                            --------->DAG2           <----------- ---DAG2    --------->CCA1(2)     ----------->RAV1(1)          ---------->DOF2          <------------ ---------GT1 ---------->DOF2    <----------ID1           <---------YAB1              ----------->HVH21   ttccaatccaaaagataaaagataatgtgaatattgcaacaaaattagatgagccaaaatatgaaaaaagcagcaaagtttggagtaagtgacacaaact  20122100        --------->ANAC46     ----------->RAV1(1)    --------->ANAC58    --------->ANAC58                <----------DOF2                  --------->GLK1(2)    --------->ANAC46       --------->ANAC46           --------->ARR14(2)  <---------ALFIN1   <---------MYB52(2)    --------->DAG2    <-----------HVH21                     -- ------AGL1   ---------->DOF2--------->ZAT14          <---------ALFIN1                            --- -----------TaNAC69(2)   --------->ZAT6   ---------->DOF2   <----------DOF2                  --------   ggaaacacaccagaaacaaagtgactaacactaaacttctttcaaaaagtattcccaaaccgctttcagacaatctttcagcatgtctgaaacacatttc  20122200  Previous    Next  AGI:  At3g54300.1    Description:  ATVAMP727 (Arabidopsis thaliana vesicle-associated membrane protein 727). Identical to Vesicle-associated membrane protein 727 (VAMP727) [Arabidopsis Thaliana] (GB:Q9M376;GB:Q53XE0); similar to ATVAMP725 (Arabidopsis thaliana vesicle-associated membrane protein 725) [Arabidopsis thaliana] (TAIR:AT2G32670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63919.1); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908) Range:  from: 20119186    to: 20121661    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g54310.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70793.1) Range:  from: 20122131    to: 20123922    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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