Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <---------ICU4                                                          <---------YAB1                                                       <---------AHL20(2)                                                       <---------YAB1                              ----------->RAV1(2)     --------->AHL20(2)                        <-----------GT1               <---------AHL20(1)                      <---------YAB1                  --------->AHL20(1)                    <---------AHL20(2)              ------->TEIL                    --------->ATHB51            <---------TOE2(3)                   ---------->DOF2                    <---------ICU4            <---------AHL20(2)        <---------ANAC46            <                    --------->AHL20(2)        --------->AHL20(2)        <---------ANAC58         <---                   --------->ICU4         --------->AHL20(2)            <---------ANAC58  --------->DAG2 --------RAV1(1)<---------AHL20(2)        <---------AHL20(2)  <-----------GT1  ----------->GT1 ------ -GT1           --------->AHL20(2)   <---------AHL20(2)--------->AHL20(2)<---------LBD16---------->DOF2   tgttgttgttgtttttttttaattattttcgcccctgattttttttaattaatgaatataatttttgcaatttttcgtgggaggctaaaagaaaggcgag  20102900                                                                     <----------DOF2                                    ---------->DOF2               ------>NtERF2                    <-    >>>>>>>>>TBF1                 --------->MYB46(3)             --------->DEAR3(1)         --------- ------ZmHOX2a(1)                --------->ANAC58             --------->ANAC46    --------->AHL20(2) ---ZmHOX2a(1)      --------->AHL20(2)          <---------At4g35610 <---------DAG2<---------AHL20(2) --->ALFIN1  --------->MYB46(3)  --------->ANAC58         --------->GLK1(2)--------->LBD16  ---------   gaggaagaagaaggaaccagcattatatatgaagcacccaaagcattctctgctcttgagaacctcgcagccttttccaggtattaaaacaaaaccctaa  20103000                                            <-----------GT1                                          <----------TaMYB80                                          --------->GLK1(1)                                          <---------GLK1(1)                                          --------->HSFB2a(1)                                         <---------GLK1(2)                                         <-----------ARR10                                 ----------                                         --------->ARR14(2)                             ------>NtERF2                                         <---------ARR14(2)                            <---------ETT(1)                                     <---------LBD16                               <---------ARR14(2)    <----------DOF2                  <---------HSFB2a(2)                      --------->ANAC58 ----------GT1                   <----------DOF2--------->LBD16               --------->ANAC58 >TOE1(3)                ----------------------->TaNAC69(2)              ----------->ARR10 --------->MYB46(3) >TOE2(3)     --------------->AGL15  --------->HSFB2a(2)       <------ZmHOX2a(1)   --------->ARR14(2)   ttttctctttctcttatcaaatttagtattcttctctttctcggattttccctagaaattcacgaggatgaagatgagaaacgcctatcccgacccaatc  20103100                                                                                               ------                                              --------->ARR14(2)                             <-------                         <---------DAG2       <---------ARR14(2)                           <---------WOX13(1)                      --------->ANAC58  --------->ARR14(2)                               --------->ATHB12                      --------->ANAC58 <---------CCA1(2)       <-----------GT1        <------------CBF             <----------DOF2      <-----------GT1 --------->LBD16 <----------DOF2    --------->ATHB12 -->CBF ---------->DOF2  <----------DOF2<---------ARR14(2)  <---------GLK1(1) <-----------GT1<<<<<<<<   gaattactaaaaaagctttaacccaagctttttgattttctatatccgaatgcgcgatttcgatttctcttttcgataattttctggtcattgatttacc  20103200                   <---------ANAC46      <---------ANAC58      --------->ALFIN1    --------->ALFIN1    <---------ZAT6 ----->RAV1(2)     <---------REM1(1)                                                    <-------TEIL ----GT1        <-----------RAV1(1)                     --------->ZAT2     <---------At4g35610 <GT-1<---------ANAC58  ----------->GT1      --------->ATHB12    --------->ALFIN1  <------ZmHOX2a(1)   tgcagagtgtgtgtgtctgtgttgtagggttattagttttcgctaagtgatttggatgagcttggatgtggaagtgaagctaagaggaggttcactcttg  20103300                                                                                              <------                                                         ------>NtERF2                       ------>ZmHOX2a(1)            <---------TOE2(3)                           --------->LBD16                      <-------       --------->YAB1                                   --------->ANAC46                 <---------ARR11(3)       <---------ICU4                                  --------->HSFB2a(2)               <---------ARR14(2)      --------->ICU4            ------>ZmHOX2a(1)      <---------HSFB2a(2)    <-----------RAV1(1)   <      <---------YAB1   <------------CBF        --------->MYB46(3)           <----------DOF2 ---------  <-----------TGA1   <---------YAB1          ----------->RAV1(1)        ------>ZmHOX2a(1)--------->ARR14(2)   tcatcgtcatcatcaacgttgttgtcattgtgtccttcatggcacagcaacaatcttcccgactcaatcgtctccttactttgttggacagtatccttta  20103400                                                          <---------CCA1(2)                                                   <-----------ARR10                                                   --------->ARR14(2)                                                   <---------ARR14(2)                            <---       <---------YAB1      <---------ICU4       <---------ANAC46                                <----    <---------YAB1         --------->YAB1       <---------ANAC58                                -----    ------>ZmHOX2a(1)      <--------ATHB1       <---------ANAC58                           ------>ZmHOX2a(1) ---MYB52(1)        <-----------GT1        <---------MYB46(3)   <---------ICU4            --------->TOE2(3) ---DOF2<---------ICU4    <---------ATHB12 <---------REM1(1) --------->YAB1 --------------->AtSPL3 <- -----------GT1<----------DOF2          <-----------RAV1(1) <---------YAB1  <---------------AtSPL8<-- >TOE2(3)  <-----------GT1<---------ATHB51 <-----------RAV1(1) <---------YAB1   <-------TEIL   ------   tttttcctgattatttcctttgttaccaataatgcttcgtttttgttgttgcgtttcttcgtatcataatcgcttaagaaggtacatgttctccttaatt  20103500                                                            --------->ARR11(3)                                                            <---------ARR11(3)                                                            --------->ARR14(2)                                                       ===============================HOX2a_HOX2a                                                       ===================================HOX2a_HOX2a                                                       ------>ZmHOX2a(2)                                                      ================================HOX2a_HOX2a                                                      <------ZmHOX2a(2)                                                      ====================================HOX2a_HOX2a                                                --------->ANAC58                                                --------->AtLEC2     <----------DOF2                            --------->ANAC58 --------GT1                         --------->MYB52(1)<---------LBD16 -----ICU4                        <---------At4g35610<---------ARR14(2)                       ------- ---->YAB1 <---------ZAT2--------->ANAC46   ------>NtERF2--------->LBD16                  <---------At4g35610 --------ICU4            --------->ANAC58--------->ZAT14<---------LBD16                   --------->At4g35610 -------YAB1             --------->ANAC58--------->At4g35610<---------ARR14(2)     <------ZmHOX2a(1) --->ICU4  <---------At4g35610    --------->At4g35610--------->ARR14(2)        ------>ZmHOX2a(1)<----   atcatttctttgtagctggttcaacacaagctactcggctaactgcagccaagcagatcggggatattgcaaagtctcatcctcaggacttgagctctct  20103600                                                                 <---------YAB1                                                             <---------ANAC58                                                             <---------ANAC58                                                            --------->ATHB12                                                          <--------P                                                         <-------GAMYB                                                        <---------MYB46(3)                                                       --------->ALFIN1                          <---                                                       <---------AtMYB61                     <-------   ---------->DOF2                                  <---------DEAR3(1)  --------->ATHB12     <------- -------->AGL15           <----------DOF2     <-------TEIL<---------WOX13(1)           <---------YAB1 ------DOF2            <-----------GT1       --------->CCA1(2)<---------WOX13(1)     --------->YAB1--   tttgagaaaggtatagtcatgggatttactttctatagattacagagatacagggctgtggttgattgttatactgatgggaatcaatgacaattgctag  20103700                                                                                             --------                                                                                             --------                                                                                          <-------GAMYB               --------->ANAC55(2)                                                        <------NtERF2               <---------ANAC55(2)                                                       <---------MYB46(3)       --------->TOE2(3) <---------ZAT2                                                  --------->MYB55(2)      <---------ANAC55(2)--------->ZAT2                    ------>MYB46(1)              <---------ANAC58     <-------TEIL--------->ANAC46                          ------>MYB83                 <---------ANAC58 ------ZAT6    <---------ANAC58                          --------->TOE1(2)              <---------ANAC46 --ANAC58    <-----------GT1                 <----------DOF2                           <---------LBD16 --ANAC58--------->AHL20(2)  ----------->ARR10           --------->TOE2(2)  --------->ZAT18 --------- -------->DOF2 <---------ANAC58<---------GLK1(2)      <-----------GT1       --------->At4g35610   tgaaagttacataaattacgcgtccctagcttagatgctctcttggtctttgtaataaacctactattcttccgaatgtgctcaatataggcgggtggac  20103800  Previous    Next  AGI:  At3g54280.1    Description:  ATP binding / DNA binding / helicase. similar to ATCHR12, ATP binding / DNA binding [Arabidopsis thaliana] (TAIR:AT3G06010.1); similar to putative SNF2 domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25208.1); similar to hypothetical protein OsJ_005313 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17906.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain Range:  from: 20103339    to: 20115133    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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