Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <---------RVE1(1)                                                                                <---------ARR11(3)                                                                                --------->ARR14(2)                                                                                <---------ARR14(2)                                                                                --------->ARR11(3)                    --------->ANAC58       <<<<<<<<<GT-1                --------->DAG2                    --------->ANAC58       <-----------GT1             ---------->DOF2           <----------DOF2     <---------------AGL15              ------->TEIL <------ZmHOX2a(1)           <---------DAG2     ----------------->AGL2           --------->ANAC55(2) ---------------->WRI1        ----------------->AGL3           <---------ANAC55(2)   tagttttcttctcctttttcacaaacaatgtgcccataaatagatttacctgttttttttttgttatgtatcaaaaagagaggattttttgaagtcaaat  20083700                                <------MYB83                                <------MYB46(1)                               <---------MYB46(3)          <---------YAB1                               <---------AtMYB61      --------->YAB1                              <---------WOX13(1)      <---------ICU4                            --------->ATHB12         --------->ICU4                               ---                        -------->P                   <---------ATHB12                            <---                        --------->MYB52(1)         --------->WOX13(1)                            ----         <---------ALFIN1 <---------MYB59      ----------->GT1     <---------ZAT18               <---   tgttctcactcacactctgtattggctacctgattggtggaatacatagaagttaatcatgaagattagaacacttgatattgaagaaaacacttgaaaa  20083800                  --------->YAB1                 <---------YAB1               <---------ICU4            --------->AHL20(2)            --------->YAB1         --------->YAB1        <---------ATHB12        <---------ATHB51  --------->REM1(1) <-------TEIL  --------->YAB1 -------->GT1<---------AHL20(2) ------------AtSPL8 ----------->AtSPL8       <-------MYC3                                                            <-- ------------AtSPL3       ------->MYC3               --------->ANAC46         <---------AHL20(2)  ---   tggtacatcaataataaaaatgataacacgtttaactgaaaaatcatttacaaatacacaattcttttgaaggctaccatttttttttttgggaattgtt  20083900                                                            <-------TEIL                                                        --------->ARR11(3)                                                        --------->AHL20(1)                          -    <---------AHL20(2)                                  <---------ARR11(3)              ---------->DOF2 ------->TEIL                        <----------DOF2   --------->AHL20(2)  <---------YAB1           < -------ANAC55(2)                    <---------DAG2  --------->AHL20(2)  <---------AHL20(2)   <------ ------>ANAC55(2)            <---------AtMYB61     --------->AHL20(2)   <---------AHL20(2)  ---------   atgtattttttttttagcaacttgaattgttttggtttacttttttccaaaaaaaaaatatatacatgttgttttttatttttgttatggcaaagaaatt  20084000                                                                                  *TSS  <---------TOE1(3)                                                                               --------->GLK1(2)                                                --------->YAB1             ----------------->AG<-----                                            <----------DOF2                --------->TOE2(3)   ------                                           <---------DAG2                  --------->TOE1(3)   <----- -------->ARR11(3)--------->AHL20(2)     ------>NtERF2                ------->GAMYB----------->GT1  - ---------ARR11(3)--------->YAB1        --------->ANAC46             --------->ANAC58   <---------TOE2(3) ------CBF     --------->WOX13(1)       --------->ANAC58             --------->ANAC58  ---------->DOF2 >ARR11(3)   ------------>CBF           --------->ANAC58             --------->ANAC46  <---------DOF5.7(2)   gagatgtttggatttttcaattaaaaaaaaaaaaactcatctacgccttttcatatttcgcttgaacaacaacgaaaccctaatctggttaaagttggat  20084100                    <---------GLK1(1)           --------->DEAR3(1)           --------->AtMYB61           <---------ALFIN1          --------->MYB46(3)          <---------MYB55(2)                                       <-----------GT1         <---------       --------->ZAT18                                          <---------AHL20(1)    --------->At5g28300       <---------ZAT18                                          --------->AHL20(1)  --------->ANAC58 ----GLK1(2)        <---------At4g35610                         <---------ARR11(3)  --------->ANAC58 --->ARR14(2)   --------->ALFIN1                                --------->ARR11(3)  --------->ANAC46 ----ARR14(2) --------->DEAR3(1)                         <-------GAMYB            <---------ALFIN1 ----->NtERF2 <---------ANAC46                       ------>ZmHOX2a(2)       <---------GLK1(1)   tcggccaagtccaccaccgtggagctctgaattcatttctcttgtaattcatcgatcgctgttgaatattttcaatttgagttcccacggtagaaaccat  20084200                                                         --------->GLK1(2)                                                         <-----------ARR10                                                         <---------ARR11(1)                                                         --------->ARR14(2)                                                         ------->TEIL                                                         <---------ARR14(2)                                                        <---------CCA1(2)                                                        <---------ARR14(1)                                                      <---------ANAC46           <---------ANAC58                                                     <------NtERF2  <-----------GT1                           <---------At4g35610       <---------At4g35610         <---------ANAC58 --GT1                     --------->ZAT2        ------>ZmHOX2a(2)<-----------HVH21        ----------   tccgatttatacggctacttcatcgctcgagctctctcgtttctgtatcgatcgcagcgtatctgatttgtcaccggtttcaggcttgtttctctgacct  20084300                                                                            --------->At4g35610                                                                            <---------ZAT2                        <----------DOF2                                     <---------At4g35610                      <---------ZAT18                                   <-----------GT1                    <---------ZAT18                                    <---------YAB1       <---------At4g35610          <---------ATHB12            --------->At4g35610       --------->At4g35610        --------->WOX13(1)            <---------At4g35610 ->HVH21 ------>NtERF2--------->ZAT18 --------->WOX13(1)        --------->LBD16        <---------At4g35610   ctggttatcggctccctgattttgcgctctatctattaatcaatctcttattccaagtctttgttccgctgttatcacagctcatcttcatcttccattc  20084400                         <---------At4g35610                        <-----------RAV1(1)                    <-------GAMYB                  <------NtERF2                                                       <---------ANAC58                 ------>NtERF2                                                        <---------ANAC46                <---------DEAR3(1)                                                 <---------GLK1(1)                <---------ANAC46                                                   --------->GLK1(1)                --------->DEAR3(1)                                                <---------ARR14(2)              --------->LBD16                                                     --------->ARR14(2)              <---------ATERF1(1)                          <-----------GT1       <------ZmHOX2a(1)             <---------DEAR3(1)             <---------TOE2(2)                  <---------TOE2(3)            --------->SPL7         <---------At4g35610  <---------ICU4   <---------AHL20(2)   -------            <---------LBD16   <----------DOF2       <---------YAB1       <---------YAB1<---------LBD16      <----------DOF2<---------MYB52(1)     <---------TOE1(2)        <----------DOF2  <---------ANAC58   actggtgtctttggtccggcgtcgttgtgctgctttcagttcatcacaggtattctcatttttacctgtttcttttttattgaggatttcgtggatgtga  20084500                                                                                   --------->YAB1                                                                                  <---------AHL20(2)                                                                                 --------->AHL20(1)                                                                                 --------->AHL20(2)                                                                        --------->At4g35610                                                                        <---------At4g35610    <-----                                                                        --------->ZAT2 --------->ARR11(3)                                                                      <-----------RAV1(2)------>ZmHOX2a(2)                                                                     <---------MYB52(1)<---------ARR11(3)                                                                    <-----------HVH21 <---------ICU4                      --------------->AGL15                         <-----------TGA1 --------->ICU4                      <----------DOF2                              --------->YAB1<---------AHL20(1)                   <-----------GT1    --------->ZAT6          <---------MYB59    <---------AHL20(2) ---->HVH21       <<<<<<<<<MYB98<----------DOF2       --------->GLK1(2) <---------ZAT2--------->YAB1   ccagttcaagttttttgtatgttactttgtatagcttttaagactcgattactgagaatttaggcctaatcgtcagctgaaaatataatgatctctactg  20084600  Previous    Next  AGI:  At3g54220.1    Description:  SCR (SCARECROW); transcription factor. similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT5G41920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45339.1); similar to SCARECROW [Cucumis sativus] (GB:CAI30892.1); similar to SCARECROW [Ipomoea nil] (GB:BAE48702.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 20081136    to: 20083758    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g54230.1    Description:  nucleic acid binding. similar to D111/G-patch domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G34140.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76782.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63444.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain D111/G-patch; (InterPro:IPR000467); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) Range:  from: 20084082    to: 20091242    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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