Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->TOE1(3)                                         <---------MYB59                                         --------->TOE2(3)                                      ------>MYB46(1)    <---------ANAC58                  ------>MYB83                   --------->At4g35610    <---------ANAC58                <---------MYB46(2)               <---------At4g35610    <---------ANAC46                --------->AtMYB61                ----------->RAV1(2) ------->ATHB12                     <---------MYB111(1)              --------->ZAT2 -------YAB1                        <---------MYB59                  <---------ZAT2 ------DOF2                    --------->YAB1                    -------->P                    <----- --ALFIN1                 <---------CCA1(2)               --------->ALFIN1                    <------   ttgattgtgtgagagacttcttcatcccatctctcataccaaacctaaatcaaatgactagtggtgcaacctgctgactccatatgaccataactaataa  20080700                                                                            --------->AHL20(2)                                                                            <---------AHL20(1)                                                                   <---------At4g35610                                                                  <---------ARR14(2)                                                                  --------->GLK1(2)                                                                  ------->TEIL                                                                 <---------GLK1(2)         ------->TEIL                                --------->ANAC46----------->HVH21      <---------YAB1                                 --------->ANAC55(2)    <---------AHL20(2)  ----- ----AHL20(2)         ------->TEIL                 <-----------GT1--------->ARR14(2)      <---------- ---ATHB12         <---------REM1(1)         <---------ATHB12--------->At4g35610 <-----------GT1<----   atcggtttatgaatccaactcatgtagctctatagaatagaaacccattcatttcacataatgaactgaatctgacattttatttacatcatttactact  20080800                                                                 <----------DOF2                                                              <---------AHL20(2)                              <---------ICU4                  <-----------GT1                             --------->ICU4              <---------AHL20(1)                <---------ARR11(3)                       --------->AHL20(2)                --------->ARR11(3)                    --------->ATHB51              --------->GLK1(2)   ----------->GT1           <---------YAB1           --------->AHL20(2)        --------->YAB1 ---------->AGL15          --------->YAB1          --------->TOE2(3)<-----------HVH21 -GT1   --------->ICU4<----------DOF2      <---------YAB1<---------AHL20(2)    <---------YAB1 -----------AGL15<------ZmHOX2a(2)       --------->YAB1  --------->AHL20(1)  --------->YAB1    ------   caattttgtaattagcaagatcatctttttcattattcaacaattttgatattccataatttattaactttgtcatacatcataatattctgaaattttg  20080900                  --------->ANAC46                  --------->ANAC58                                       <---------MYB52(1)                  --------->ANAC58                                       <--------P                 --------->LBD16              ------>MYB46(1)           <-------GAMYB             <---------ARR14(2)               ------>MYB83   <-----------GT1             --------->ARR14(2)             <---------MYB59  <---------ARR11(3)             <---------TCP20                --------->AtMYB61--------->ARR11(3)       <-----------GT1               --------->YAB1     --------->AHL20(1) --------->ARR11(3)                 <---------YAB1      <---------ARR11(3)      --------->HSFB2a(2) --------->AHL20(1)               <--------HAHB4        --------->AHL20(2)      <---------HSFB2a(2) <---------AHL20(1)               --------->YAB1        <---------AHL20(1) --------->MYB52(2)      -- ----->GT1   <---------TCP16(1)  <---------YAB1     --------->YAB1     <---------MYB46(3) --------->WRKY18(1)   ttatatattgtaccggttccacgaaatagagctctattattatagaccaaacaaacaaaatattatcttcttgtggttagttcgagagagaggtcaagaa  20081000                                                                  ------>MYB46(1)                                                                  ------>MYB83                                                                <---------MYB59                                                                <---------MYB46(2)                                                                <---------MYB111(1)                          <-----------HVH21                    --------->ANAC46                         <----------ID1                       ------>MYB83                         --------->O2                         ------>MYB46(1)                         <---------O2                        <---------ALFIN1                        <-----------STF1                    --------->DEAR3(1)            <----------                        <-----------------------TaNAC69(2)  <---------MYB111(2)        <---------YAB1                --------->MYB52(1)           ------->TEIL   <---------MYB55(2)        <---------AHL20(2)           ------>ZmHOX2a(2)            ------->GAMYB       --------->MYB46(3)        <---------AHL20(1)         <---------ARR14(2)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <---------YAB1         --------->ARR14(2)          --------->MYB52(1)    --------->ANAC58      <---------YAB1 --------->ANAC58 --------->ANAC58--------->ANAC58         --------->ANAC58      <---------AHL20(2) --------->ANAC58 --------->ANAC46--------->ANAC46      <------ZmHOX2a(2)       --------->AHL20(2) ------->MYB52(1) --------->ANAC58--------->ANAC58     <-----------HVH21    --------------->AGL15   gaaacgaaatggatcggcaaacggaagacgtcaaacacacaacgacgaacattttccgatcacccacctaatctcttcccatttttattatttttcaaaa  20081100                                                                                                  ---                                                                                                  <--                    --------->MYB52(1)                                                ----------->RAV1(1)             ----------->GT1                                                    --------->ANAC46  <--    <---------AHL20(2)                                                     <---------------AtSPL8 <--    --------->AHL20(2)                                                   <---------AHL20(2)      <---    --------->AHL20(1)               ---------->DOF2                    --------->AHL20(2)       ----   --------->AHL20(2)               *TSS ----------->GT1      ---------->DOF2--------->TOE1(2)   <--- -GT1       ------------------------>ANAC81             <---------ZAT6  <---------AHL20(2)  ---------   ctcaaattaattaagaagaaaaaaacagaaacagagagagaaagagttaagatgaatagagatagaaagagtcattaaatgtacgaagcgacattcacaa  20081200                                                                                                   --                                                                                                 ----         --------->ALFIN1            <---------ZAT14      ------>ZmHOX2a(1)                      ---- ------>ATHB51                 <-----------RAV1(2)       --------->TOE2(3)        <---------LBD16---- -------ICU4              <-------TEIL                 ------>ZmHOX2a(1)          --------->HSFB2a(2) ----------ATHB5         --------->CCA1(2)        --------->TOE2(1)               <---------HSFB2a(2) ------ATHB1             --------->ARR14(1)       --------->TOE1(1)         <----------DOF2<---------At4g35610 ------ATHB51           --------->ARR11(1)       ------>ZmHOX2a(1)          <---------DAG2 --------->At4g35610 ----->ICU4             --------->ARR14(2)      <---------ALFIN1       -------->P<---------LBD16 ---- ------ATHB12           <---------ARR14(2)    ------>ZmHOX2a(1)      ----------->HVH21  <-------TEIL< >YAB1--------->DAG2  ----------->ARR10--------------------->WRI1  --------->ANAC46--------->LBD16---   taattcgaaaggtggaagacgacttagatacggccaggcttcactgtcctcctcgtcctcctcaattacccctaacccctttttccgggattcatctcca  20081300                                                                          --------->ANAC58                                                                          ----------->GT1                                                                          --------->ANAC58                                                               --------->REM1(2)                                                           <------ZmHOX2a(2)                                                          --------->ARR14(2)                                                 ------>ZmHOX2a(1)     <------ZmHOX2a(2)                                                 =================HOX2a_HOX2a         --------->GLK1(2)  <---------ALFIN1                               =============================HOX2a_HOX2a ----->GAMYB                                     ==================HOX2a_HOX2a       <---------GLK1(2) ----->ANAC46<---------GLK1(2)               <-----------GT1------>ZmHOX2a(2)      <---------TOE2(3) -->MYB46(1) --------->ARR14(2)         <---------DAG2    <---------ARR11(3)    <---------AHL20(2) ---->P------>ZmHOX2a(1)<---------ALFIN1<----------DOF2   <---------ARR14(2)    --------->AHL20(2) -->MYB83    <---------ARR14(2)        <---------ANAC58   --------->ARR11(3)--------->AHL20(2) ---------ALFIN1     <---------ALFIN1<-----------GT1     --------->GLK1(1)--------->ANAC55(2) ------>MYB46(3)     --------->DEAR3(1)<---------ANAC58  <---------GLK1(1)<---------ANAC55(2)    ----   acccacatccttccaaattctcaccccctcactgagtttttgctttttctcctcatcggagatcgtgaagacgatcaagtaatttaagaatcccaccatt  20081400                              <----------DOF2                                <---------MYB59                          ------>MYB83                                       <---------DAG2                          ------>MYB46(1)                                    --------->TOE2(3)                        <---------MYB46(2)                                   --------->TOE1(3)                        <---------MYB59                                      --------------->AGL15                        --------->MYB46(3)                                <-----------GT1  --------->AtLEC2                        <---------MYB111(1)                             <---------ANAC58   --------->ANAC58                        <---------MYB111(2)                             <---------ANAC58   --------->ANAC58 ---------->DOF2        --------->AtMYB61                           <----------DOF2   <-----------GT1 ----->YAB1  <----------DOF2 --------->TOE2(3)  <-----------GT1<-----------GT1     --------->YAB1   gataaaagagtctagcttttctactaccaaacctttttctgtttggaaattttcgattttggatttaacccttttcttaccttatttataaccatgcaat  20081500          -------->P         ------->GAMYB        <---------MYB111(2)                                      ------>ZmHOX2a(1)        --------->AtMYB61           --------->LBD16           ------>ZmHOX2a(1)        <---------MYB55(2)        <---------LBD16         ------->GAMYB        <---------MYB52(2)      --------->ARR14(2)        --------->AtMYB61        <---------MYB111(1)     --------->GLK1(2)        --------->MYB46(3)        --------->MYB46(3)      <---------ARR14(2)    <---------WRKY12                              -       ------>MYB83            <---------ARR14(2)     <---------WRKY45                          -----       ------>MYB46(1)         --------->ARR14(2)     <---------WRKY38(1)                   <--------     --------->AtMYB61        <------NtERF2          --------->WRKY18(1)  <---------At4g35610 <------    --------->MYB46(3)      <---------ANAC46       <---------MYB46(3)     --------->At4g35610-------- --------->ANAC58          <---------LBD16        --------->ALFIN1        ------>ZmHOX2a(1) --------- --------->ANAC58      <---------AtLEC2         ------->GAMYB<---------ALFIN1              <---------LBD16   ctcacgaccaacaacccttcaatctccatggcggaatccggcgatttcaacggtggtcaacctcctcctcatagtcctctgagaacaacttcttccggta  20081600  Previous    Next  AGI:  At3g54220.1    Description:  SCR (SCARECROW); transcription factor. similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT5G41920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45339.1); similar to SCARECROW [Cucumis sativus] (GB:CAI30892.1); similar to SCARECROW [Ipomoea nil] (GB:BAE48702.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 20081136    to: 20083758    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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