Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <---------AHL20(2)                    --------->AHL20(1)                    <---------AHL20(1)                    <---------ARR11(3)                                                    --------->ANAC58                    --------->AHL20(2)                                             --------->HSFC1(2)                    --------->ARR11(3)                                             <---------HSFC1(2)                    <---------AHL20(2)                                        --------->AtLEC2 -----ANAC46   --------->AHL20(2)                                        --------->ANAC58 --------->ANAC46 ->O2          <---------AHL20(2)                                        --------->ANAC58 --------->ANAC58 --O2 <----------DOF2<---------AHL20(2)                                  --------->ANAC46--------->LBD16   gtttaagacttttttgttttaatatattttttgtcgaagacaaaatagtcagtatatagttgtaaaccaatatgcaggcaatgcaagtttccacgaaatg  20064000                      --------->YAB1                   <---------------AtSPL8                     <---------YAB1                    --------------->AtSPL8                   --------->YAB1                ----------->GT1           --------->ATHB12                    --------->DAG2          --------->ICU4                      ---------->DOF2                <-----------GT1      --------->AHL20(2)                 <---------HSFB2a(2)      --------->GLK1(2)         --------- ----------->GT1----------->GT1  <----------DOF2----------->GT1 <---------AHL20(2)      <---------ZAT6   gtagagaaaaaaatgatttagttataatcaattttctttcaatctcgaaaaaggaaaattgtacatataatctgtgttttatctgtattagtgttaggcc  20064100                          <---------ICU4                         <---------YAB1                         --------->ICU4                       --------->YAB1                    --------->ANAC58                  <---------TOE1(2)                    --------->ANAC58            <---------CCA1(2)                   --------->DAG2        --------->At4g35610                   <---------CCA1(2)            --------->DAG2  <-------TEIL      --------->ANAC46        <---------ANAC58              ---------->DOF2     ------- >MYB59 <---------At4g35610                 <---------ANAC58      <-----------GT1  ---------->DOF2   caagttcattagctgaagtttcaagtcataatgggctcaattttgggcttatctcttgggtttagtttttacaagataaagttgataaagtgaagactaa  20064200                                                                                               <-----                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                                                          <-------GAMYB                    <---------GLK1(2)                                                         <---------MYB46(3)                <---------                                                         <---------ANAC58                 <------NtERF2                                                         <---------ANAC46               <---------ANAC46                                                         <---------bZIP60(2)           <---------LBD16                                                         <---------ANAC58           <---------LBD16                                                  --------->ZAT14             --------->At5g28300 <--     ---------->DOF2              <----------DOF2 <---------ZAT14    ------>ZmHOX2a(2)------>NtERF2 <   <------ZmHOX2a(1)         <-----------GT1      --------->ZAT18  <---------ARR11(3) --------->LBD16 <---------TOE2(3)       <----------DOF2     --------->ANAC46      --------->ARR11(3)<---------DEAR3(1) -------->AGL15          <---------DAG2<<<<<<<<<TBF1  --------->ALFIN1      <------------AtMYB77 ----   aatgaggaaaagagagggtctcgagcgctttttactctttcttcttcacgagagcagtgtcgttgctctgatcttgtaactgtaactccggcggattttg  20064300                                                                          <---------------AtSPL3                                                                          --------------->AtSPL8                                                              --------->ZAT14                                                              <---------ZAT14  --------->REM1(1)    <-----------GT1  --------->ZAT14                        --------->ZAT14   --------->SPL7      <-- ------GT1           <---------ZAT14            ----------->GT1           --------------->AtSPL3  <-- --ARR10            --------->ALFIN1           --------->ANAC58    --------->At5g28300        <------ -------ANAC46  <---------LBD16                --------->ANAC58    --------->LBD16         ---------- ---------MYB52(1)--------->LBD16              --------->ANAC46 <---------At5g28300       --------->TOE2(3) ------>ID1   <-----------GT1       ------>ZmHOX2a(1)   <-----------GT1   <---------------AtSPL8  <--   ccgtttatactggatttttccggtgtagtatgtgattcctccgatatagacgctaaaatcactgttcaccgtgaaactcgtacatcaaatttcgtcaatt  20064400                                                      --------->TOE1(2)             <---------HSFB2a(2)    <----------DOF2                                  ------>ZmHOX2a(2)              --------->HSFB2a(2) -------ANAC58                                      <------ZmHOX2a(2)              <---------LBD16 -------ANAC46                                     <---------ARR11(3)  ------>ZmHOX2a(2)       ------ ------CBF  <----------DOF2                        --------->ARR11(3) <------ZmHOX2a(2)   <---------MYB59 -->CBF ---------->ID1                      --------->ATHB12         --------->ARR11(3)   --------->TOE2(3) -------ANAC58             ------------>CBF<---------YAB1            <---------ARR11(3)   --------->TOE1(3)   gcgtttctttatcgcttttgagtttcgactacaattcatgaaaccatgagtgagatcgtgagagttcaagagatcgtttctaaactctggaacctaaaca  20064500                           <---------YAB1                  <---------ARR11(1)                  ------->TEIL                  --------->GLK1(2)                  <---------ARR14(2)                  --------->ARR14(2)                   ------>ZmHOX2a(1)                 <---------GLK1(2)          ----------->GT1                             <---------ANAC58                 <---------ARR14(1)         <------MYB46(1)                         --------->ARR11(3)                 <---------CCA1(2)          <------MYB83<---------TOE1(2)           <---------ARR11(3)               --------->LBD16              <---------MYB46(3)             <---------HSFC1(2)               --------->ANAC46         <-----------RAV1(1)                <---------HSFB2a(1)              --------->LBD16  --------->YAB1<-------GAMYB                 --------->At4g35610             <---------LBD16  ================================HOX2a_HOX2a  --------->HSFC1(2) ------- --->YAB1 --------->ARR14(2)  <------ZmHOX2a(2)  <---------YAB1     --------->MYB52(1)  <---------ANAC58   tagcctccaaaaaatccccgaatctggttacgatcatatcgaatgttggttataatccttcgtttgaaactaatggaagcttcaaagatttcgtttctcg  20064600                      <---------------AGL15                     ----------------->AGL3                     <-----------------AGL3                     <-----------------AGL2                     ----------------->AGL1                    <---------DOF5.7(2)                    <---------At5g28300                 <-------GAMYB            ----------->HVH21          <---------O2--------------->AGL15          --------->ANAC46        --------->GLK1(2)          --------->O2<---------ANAC46 <----------DOF2                                              -          <---------TGA1a      ----------->ARR10                                                    -          --------->TGA1a     <------ZmHOX2a(1)                                        <---------WRKY38(1)          ================MYC_MYB--------->ARR14(2)                                    <---------WRKY12          ===============MYC_MYB <---------ARR14(2)                                  <-----------HVH21          ========================================bZIP_DOF                  <-----------GT1         -    <---------STY1(2)<-----------------AGL1                           <---------At4g35610    ------->TEIL    --------->STY1(2)----------------->AG             <----------DOF2 --------->At4g35610 --------->MYB46(3) -->HSFB2a(2)------------>AtMYB77<---------GLK1(2)   --------->MYB52(2)  --------------->AtSPL8<-----   attactagctcgacgtgacagttaccgtataaggagattctctttgaaactacgttctttggaatttgattcagctaagtaccatcttgtcaacgaatgt  20064700                              ------>ZmHOX2a(2)                               --------->ARR11(3)                            --------->ARR14(2)                                <---------ARR11(3)       --------->ALFIN1     <---------ARR11(3)                        <---------------AGL15 -------->ANAC58            --------->ARR11(3)                        --------------->AGL15       --- -------->ANAC58            <---------ARR14(2)                       <-----------------AGL2  -------- -------->ANAC46            <---------AGP1           <---------ATHB12----------------->AGL1--------->ANAC58 ------ARR10               <---------CCA1(2)       --------->WOX13(1)----------------->AG  --------->ANAC58   ctacgcaatgtgttgaatcgaggtgttttggatcttgaattggacatcaatgtcaatgaagtttacaaattgccatttgaggtcttcacttgcaagaaag  20064800                                                                                                   <-                                                                                             <-------                                                                                             <------MYB46(1)                                                                                             <------MYB83                                                              <---------At4g35610      --------->DAG2                                                              <---------ZAT2     --------------->AGL15                                                        <---------ANAC58        <---------ANAC58 ----                                <-----------GT1        XXXXXXXXXXXXXXXXXXXX>MIR773    ---------->DOF2 -------->GT1              <---------YAB1           <----------DOF2             <---------ANAC58<---- -->DOF2           <---------YAB1     <---------ARR11(3)<---------ANAC58     <----------DOF2---------   ttgtgaaattgaaactaggttctgattttgttattgacaatatccctaagaacgctttgcttccagctcttaagactctctttcttgataaagttcggtt  20064900  Previous    Next  AGI:  At3g54160.1    Description:  syntaxin-related family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G62430.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 20064446    to: 20066005    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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