Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <------ZmHOX2a(1)                                                                                  --------->ANAC46                              <------MYB46(1)                               <---------AHL20(2)                              <------MYB83                                  <---------AHL20(1)                          --------->ZAT2                     --------->YAB1 --------->AHL20(1)    ---        <-------TEIL      <---------ZAT2         --------->ANAC46           --------->AHL20(2)    --- -->ARR11(3)         <---------At4g35610      <---------ARR14(2)           <---------ATHB12--------->YAB1 ---ARR11(3)        <---------TOE2(3)         --------->ARR14(2)    --------->CCA1(2)<---------TOE2(2)   ttagagcaaatgcataccgattaagctaagcttggtacagaaacagagaatacacaatcccaattttaagctatgcaataaattacgcaggaatcataaa  20038700                                                       ==============================================                                            <------ZmHOX2a(2)                                            --------->CCA1(2)                                           <---------ARR11(3)                                           --------->ARR11(3)                         <------ZmHOX2a(2) --------->ARR14(2)             <---------MYB59      --------->AHL20(2)   --------------->AGL15                   ------         ----------->HVH21    ---------->DOF2          <---------------AGL15                   ------       <---------At4g35610 <---------HSFB2a(2)     <--------P                      <------ZmHOX2a(2)       --------->At4g35610 --------->HSFB2a(2)  <---------TOE1(2)                  <----------------- ------>TOE2(3)    --------->TOE1(2)       <---------ARR14(2)        --------->At4g35610       ------ ------>TOE1(3)   --------->YAB1----------->GT1 <---------TOE2(3) --------->At4g35610      --------->ANAC46   ccttgaaactgctgacctaaacatgagatcgagaaagtaaatgaagatccaaggttgctaatagaagaagcagccaaactaatcgatcaattcccacaag  20038800                         --------->MYB46(3)                        -------->P                       ------->GAMYB                      <---------MYB111(2)                      <---------MYB55(2)                      --------->MYB46(3)             --------->GLK1(2)<---------ZAT14             <---------ARR14(2)          <---------------AGL15         ----------------->AGL2 <----------ID1       <---------MYB111(1) ----------->GT1      <---------MYB52(2) =========================MADS_MADS                  --------->ZAT2                        --------->LBD16 --->ANAC58  --------->ARR14(2)                      --------->At4g35610                   ------>NtERF2 --->ANAC46  <---------ARR11(1)          --------->YAB1          --------->ZAT18          <---------DEAR3(1) ----WRI1----------------->AGL3 ----------->GT1      <---------At4g35610                 <---------LBD16 --->ANAC58 <---------CCA1(2) --------->ZAT14      <------ZmHOX2a(1)     <---------At5g28300 <-------   gaagcgaaaaacccaaatctagcaacaaccagtgaagaaaaaatcaaaatgaaggagctgaatcgagtgcaagattaccgtaagaaaacgctccggcgat  20038900                                         <---------AHL20(2)                                     ----------->GT1                                    <---------AtMYB61                                  <---------MYB52(1)                                <---------DEAR3(2)                                <---------MYB46(3)                               <---------DEAR3(1)                               <---------At1g77200                              <---------MYB52(1)  <---------RAP2.6(2)        <-----------HVH21                       *TSS       <<<<<<<<<TBF1 --------->RAP2.6(3)     <---------ARR14(2)                         <---------At4g35610     --------- --DEAR3(1)              --------->ARR14(2)            <----------DOF2      <-----------GT1 <--------   gaagacggcctgagaacgagagaattgaatccgtcggtgaggtttaatttgtttcttctttagaaaattgaactgatttttcttcttcagcattaagtaa  20039000                   <---------WRKY18(1)                  ----------->HVH21                                                             <<<<<                  --------->WRKY38(1)                                               ----------->GT1                 <---------WOX13(1)                                              --------->CCA1(2)                <------------CBF                     <---------MYB52(1)         --------->ARR11(1)               <------ZmHOX2a(1)                     --------->ARR14(2)         --------->ARR11(3)              <---------YAB1                    <---------ARR14(2)              <---------ARR11(3)    <---------ARR14(2)                          --------->ARR14(2)              <---------ARR14(2)    --------->ARR14(2)                         <------ZmHOX2a(1)                --------->ARR14(2)  - -->GT1 --------->LBD16           ---------->DOF2    <---------ARR14(2)       ----------->ARR10<----- -ANAC55(2)<--------P <---------LBD16     <-----------HVH21              <------ZmHOX2a(1)    -------   aaacccgaaccgggttaggattgacccggtttgaataaaagtcgggtcaggacccgatatgtttttttttgaagaggaagaagatttggataaaccctga  20039100   <---------ANAC46                              --------->REM1(1)   ----------->GT1                            --------->AtMYB61   <---------bZIP60(1)                      ------>NtERF2  *TSS                                     <---------ALFIN1          <---------ZAT14 <<GRF7                               <-----------GT1                --------->ZAT14               -- -------->ALFIN1       <---------ANAC58   --------->MYB46(3)    <---------ZAT14               ------- ------HVH21           <---------ANAC58 --------->ANAC46        --------->ZAT14               ------- ---->HVH21     <---------ATHB12     <-----------GT1     <---------YAB1         --------------->AtSPL3   cagtggtgtcaaaaacccatcaatggcttcacttcttattttcccccaccttcaccattttgattcttcactggaccgtagagaggtactagtagttcgc  20039200                                                     <---------ARR14(2)                                                     --------->ARR14(2)     <---------ARR14(2)                                                 --------->At4g35610    <---------LBD16                                                 <---------At4g35610    --------->At4g35610                                                 <---------LBD16     --------->At4g35610                                          --------->MYB52(1)      --------->ZAT2       --------->YAB1                    --------->AHL20(2)       <---------ZAT2--------->AtMYB61     --------->ANAC58                    <---------AHL20(2)       --------->At4g35610     --------->ANAC58                   <---------ATHB12          <---------At4g35610     --------->ANAC46                 <---------------AGL15      <---------ARR14(2) --------->YAB1                       --------------->AGL15      --------->ARR14(2) ------->AtLEC2                       --------->WOX13(1)--------->YAB1  <---------At4g35610 -->ANAC58                           <-----------------AGL3 --------->MYB52(1)  <---------ALFIN1 -->ANAC58                    ---------->DOF2    <------NtERF2--------->ANAC46 --------->MYB46(3)  --   cattcacaagcatcaaggcgatttctcactccgaaagcttcaattaatggcagcggaatcacaaacggagctgcagcggaaaccacctctaaacctagtc  20039300                                                                         --------->LBD16                                                                       <---------LBD16            ---                                                                     <---------ARR14(2)     ------>NtERF2               --------->ANAC58                                      --------->ARR14(2)    --------->DEAR3(1)           >>>>>>>>>TBF1                 --------->YAB1      ------>ZmHOX2a(1)  <---------At4g35610       <------ZmHOX2a(1)     --------->At5g28300             --------->LBD16    <---------ZAT2    <-- -------->DOF2 --------->ANAC58       ---------->DOF2      ------>ZmHOX2a(2)    --------->At4g35610 -   gcaaagggaggaagaagaagcaaacatcgacggtaattgagaaagataacaccgagactgatcctgaattgaatccggagttagctgattacgacgacgg  20039400                     ------>NtERF2                     --------->LBD16                   ------>ZmHOX2a(2)               ----------->ARR10            <---------TOE2(1)            <---------TOE1(1)           --------->SPL7                  <---------At4g35610          <---------SPL1(1)                <---------ZAT2          --------->SPL1(1)                --------->At4g35610         --------->LBD16                   --------->ZAT2         <---------SPL1(2)                 <------------------SPL14      <---------ANAC58         <---------SPL7               <---------LBD16                  <---------ANAC46        <---------ANAC58        <-------GAMYB                        <---------MYB46(3)        <---------ANAC58       <-----------RAV1(1)                  --------->ALFIN1       --------------->AtSPL3  --------->ALFIN1                     <---------AtMYB61     --------->GLK1(2)       <---------ANAC46                       <---------DEAR3(1)     <---------ARR14(2)      <---------ANAC58   --------->ZAT14    <---------MYB52(1)        <-------TEIL     --------->ARR14(2)      <---------ANAC58   <---------ZAT14   --------->LBD16     --------->GLK1(2) ------>ARR14(2)  <------ZmHOX2a(2) <---------ANAC46            <---------LBD16   --------->YAB1   -- -------ARR14(2) <---------ARR14(2) <---------ANAC58        <---------MYB46(3)   <---------YAB1------ ----->ZmHOX2a(2)--------->ARR14(2) <---------ANAC58   <------ZmHOX2a(1) <---------ANAC58 --------->At4g35610   gatcgagtttccgtacgacgatccgcctcttgtgtgttgcttcggagctgtacagaaggagtttgttccggtggtgcgagtccatgataatccgatgcat  20039500                                                                      --------->DEAR3(1)                                                                      --------->RAP2.3(3)                                                                      --------->RAP2.3(2)                                                                     --------->ATERF1(1)                                                                     --------->RAP2.3(1)                                                                    <------NtERF2                                                                    <---------At4g35610                                                                    <---------ATERF1(1)                                                                  <-------TEIL                                                                <---------SPL7                                                                <---------ARR14(2)                                                                --------->ARR14(2)                                                               <---------HSFB2a(1)                                                               <------MYB46(1)                                                               <------MYB83                                                              ----------->ARR10                                                            <---------MYB52(1)                                                           --------->HSFB2a(2)                                                           <---------HSFB2a(2)                                      --------->MYB52(1)   --------->LBD16                                     <---------ALFIN1     <---------LBD16                                    --------->MYB46(3)    <---------ANAC46                                    <---------ABI4(2)     <---------HSFB2a(2)                                    ------>ZmHOX2a(2)     --------->HSFB2a(2)                       <                                   <------ZmHOX2a(2)  <---------ZAT2--------->At4g35610            <-                                  <---------ARR14(2)  --------->At4g35610                         <--                                  --------->ARR14(2)  --------->ZAT2------>NtERF2             -------                                  --------->PCF2      --------->GLK1(1)<-----------HVH21  <----------               --------->ALFIN1  <---------PCF2       <---------At4g35610    <-----------RAV1(1)  <--          --------->ANAC46<---------ZAT14    --------->ALFIN1 <---------AtMYB61--------->ALFIN1------ ---->ZmHOX2a(1)          --------->ZAT14--------->LBD16 <---------LBD16<------NtERF2 ------>ZmHOX2a(2) ->TEIL------->TEIL <---------At4g35610<---------LBD16<---------GLK1(1)------>NtERF2 <------ZmHOX2a(2)   cctgatatgtactcgcagtggaagatgctacagtgggatccaccggagtttgggagagctccgggaggtccgccgtcgaatgtggcgatctctcatgtac  20039600  Previous    Next  AGI:  At3g54085.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37975.1); similar to hypothetical protein [Oryza sativa (indica cultivar-group)] (GB:ABR25323.1); contains InterPro domain Yos1-like (InterPro:IPR013880) Range:  from: 20037559    to: 20038969    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g54090.1    Description:  pfkB-type carbohydrate kinase family protein. similar to kinase [Arabidopsis thaliana] (TAIR:AT1G69200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15761.1); contains InterPro domain Carbohydrate/purine kinase (InterPro:IPR011611) Range:  from: 20039102    to: 20040964    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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