Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ------>ZmHOX2a(2)                  --------->GLK1(1)                  <------ZmHOX2a(2)                 <---------AGP1                 --------->AGP1                 <---------ARR14(2)                                                 <---------AHL20(1)                 --------->ARR11(3)                                                 --------->ARR11(3)                 <---------ARR11(3)                                                 --------->AHL20(1)                 --------->ARR14(2)                      <---------------AtSPL8     <---------ARR11(3)                --------->At4g35610                     <------ZmHOX2a(1)   ---------->DOF2                <---------At4g35610                     =========================HOX2a_HOX2a            <-----------HVH21                     ===============================HOX2a_HOX2a           <------MYB46(1)                        <------ZmHOX2a(1) ----------->RAV1(2)           <------MYB83  --------->YAB1  <---------AHL20(2)        <---------ARR11(3)     <----------          --------->MYB59--------->MYB52(1)   ---------->DOF2  ---------->DOF2 ----------->GT1 ---------->DOF2<---------CCA1(2)    <---------ATHB12 <---------TOE2(3)   ------>ZmHOX2a(2) ---------   ggggaaagaagtttggtcagatctcaataacgagagccaatgtttaatcaaaggatgaggatgtacaaagacctgatccaaaggaaaatatttcacacta  19974500                    ------------------------>ANAC81    --------->MYB52(1)      --------->AHL20(2)                               -------->P     --------->AHL20(2)                         --------->At4g35610                                 = -GT1<---------AHL20(2)---------->DOF2          <---------At4g35610                    ----------->GT1 >ZAT6<---------AHL20(2)   ---------->DOF2  <-----------HVH21--------->ZAT14<-----------HVH21       -   attcaaattaaattcagagagaattcaaagaaagagaagaagagagcgtcatcgggctaccagcatactattggtagaggtcatagacgatgttaaactc  19974600            <---------ANAC58            <---------ANAC55(2)            <---------O2            --------->ANAC55(2)            <---------ANAC58                  >>>>>>>>>TBF1    --------->YAB1           <-------TEIL            <----------ID1           --------->WOX13(1)                 ------      --------->AHL20(2)      <------ZmHOX2a(1)        --------->MYB46(3)                      <----- --------->ZAT18   <------NtERF2  --------->SPL7      ------>MYB83  --------->LBD16            <----- <---------ZAT18   <---------HSFB2a(2)     >>>>>>>>>TBF1 --------->GLK1(2)                <---------GLK1(1) ====================================HOX2a_HOX2a      ------>MYB46(1)                     --------->GLK1(1) ----->ZmHOX2a(2)<---------ANAC46<------ZmHOX2a(1) --------->MYB46(3)     --------->AHL20(2)   ------   gatcgcactaaaatacgtggccgagaagtagaggaggacgacgaagaagaagaaccaacaatctatcatccgaaaaataaaaacacacagagaaatcagc  19974700              --------->O2              --------->TGA1a              <---------TGA1a              <---------O2             ------->MYC3             <-------MYC2             <-------MYC3             ------->MYC2            --------->TGA1a            --------->ANAC58            <---------TGA1a            --------->ANAC58           ------->TEIL        --------->ANAC58        --------->ANAC58       --------->PCF2     <---------ZAT18     --------->ZAT18                                      ----------------->AGL1    --------->ALFIN1                ------->TEIL          <-----------------AG --->At4g35610<---------ANAC58      <-------TEIL       ------->GAMYB                                - ----At4g35610<---------ANAC58  --------------->AtSPL8<---------MYB52(2)                            - ----ZAT2 <---------ALFIN1 <---------WOX13(1)         --------->MYB46(3)                 --------->ANAC58 --->ZAT2<---------SPL7 <---------YAB1       <------ZmHOX2a(1)        --------->ALFIN1   --------->ANAC58   tcgagagtggacgcacgcgtgtctatacgattgatatgtacatgtaaggagagacaacaaacctgtttgggaatggggaacgaattgaaggaagccattg  19974800            --------->ALFIN1           --------->At4g35610           <---------At4g35610       <---------At4g35610    --------->ZAT2          <---------WOX13(1)--------->CCA1(2)    <---------At4g35610   --------->ATHB12   <---------ARR11(3)    --------->At4g35610  --------->ICU4      --------->ARR11(3)    <---------ZAT2       <XXXXXXXXXXXXXXXXXXXXMIR4227  <---------ANAC46  <-----------RAV1(2)    <---------YAB1--------->ZAT14 <---------ANAC58 -------->ANAC58     <------ZmHOX2a(1) <---------ZAT14 <---------ANAC58 -------->ANAC58 <------ZmHOX2a(1)   --------->At4g35610                   --------->ANAC46      <---   agacgcagatgggagcggaggaaggagatgattggagtcagtggagagatatagtttgtgtgcaaattgtatggtctacgacttctctcttctaatttgc  19974900                                                           --------->At4g35610                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <------------------------ANAC81 ----------->GT1       --------->ARR11(3)                            <----------DOF2          <-----------GT1               <---------ARR11(3)                           *TSS <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                --------->CCA1(1)                  <-------GAMYB<------------------------ANAC81                    --------->RVE1(1)                 <---------ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->ANAC46                 <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ANAC46    <-----                 --------->MYB52(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------YAB1 >>>>>>>>>RAP2.2 ------MYB59  <---------MYB52(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->AHL20(2)        ------   ctaattccctctctccgtttcgttgccactcttttttttttttttttttttttttttactcagttgtaaatttttatacacaaaatatctaaacccaaat  19975000                            --------->DEAR3(1)                               <<<<<<<ZML2                --------->MYB52(1)                                     <---------ICU4             --------->TOE1(3)                                        <---------ATHB12             --------->TOE2(3)                                      <---------ICU4            --------->MYB46(3)                                 --------->ARR11(3)                ----    <---------AHL20(2)      --------->TOE2(2)                  <---------ARR14(2)              ------   --------->AHL20(2)      --------->DEAR3(2)  ------->TEIL    <---------ARR11(3)           --------- ----ARR14(2)--------->AtMYB61      <---------YAB1   <---------YAB1------>ZmHOX2a(1)        --------- --->ARR14(2)--------->YAB1--------->MYB46(3)<<<<<<<<<EIN3     --------->ARR14(2)     --------->AtLEC2   ccaaattttatgcaaccataactgaataaaccgacgttttcattcaatgtatatgtttatagcaatatcctaatcactagaacatgaaatgcaaacgtaa  19975100                                                                  --------->ANAC58                                                                  --------->ANAC58                                                       <---------YAB1                                                     -------->HAHB4                 <---------------AtSPL8                                                     <---------ICU4         <---------ARR14(2)                                                     --------->YAB1         --------->ARR14(2) ------->GT1                                        <---------ATHB51   --------->ICU4           ----- ---->DOF2                   <----------ID1         --------->ICU4--------->ANAC46  --------------->AtSPL8 >ANAC58              ---------->DOF2        <---------ANAC46   --------->CCA1(2) <-----------RAV1(1) >ANAC58             <---------AHL20(2)    <----------DOF2 ---------->DOF2 <------ZmHOX2a(1)---------   agaaatataaacttggtctatattaaaagagaagacaaaataatgctttgtgtaattatgaaaaagataagccatgaggattctatgttgtacaaatcta  19975200                                                                         <------NtERF2                                                                        <---------ORA47(2)                                                                        ------>NtERF2                                                                        <---------ATERF1(1)                                                                        --------->RAP2.6(2)                                                                        <---------RAP2.3(1)                                                                       <---------RAP2.3(2)                                                   --------->LBD16     <---------ATERF1(2)     <-----                                                 <---------LBD16       --------->ATERF1(2)    <------                                               --------->ARR14(2)     --------->ATERF1(1)   ---------                                   <------ZmHOX2a(2)                 <---------ATERF1(1)    <--------                                  --------->ARR14(2)           <-----------HVH21         --------->YAB1                --------->DAG2    --------->ARR11(3)          --------->ANAC46       <---------YAB1     ----------------->AGL1       <---------ARR11(3)   --------->ANAC58<---------DEAR3(1)<---------ICU4   <------ZmHOX2a(1) ---------->DOF2           <---------ARR14(2)  <-----------RAV1(2)  <---------YAB1 --->P         ---------->DOF2    <---------ARR14(2)   --------->ANAC58<---------RAP2.3(3) <---------YAB1 >ARR14(2)---------->DOF2        <------ZmHOX2a(1)--------->ANAC46 --------->ATERF1(1)--------->YAB1   ccagaggaccaaaaaagaaaagtgaaagaaacagaggatcatcgactaaaatccggcatgccctccgtcgcaggcggcacaaccagtatcatcatcatca  19975300                                             --------->ANAC58                                            --------->ATERF1(2)                                           <------NtERF2                                           --------->ATERF1(1)                                          <---------RAP2.6(3)                                          ------>NtERF2                                          <---------ATERF1(1)                                         --------->ANAC58                                         <---------ATERF1(2)                                         --------->RRTF1(2)                                         --------->ATERF1(2)                                         --------->RAP2.6(2)                                         --------->RAP2.3(3)                                         --------->RAP2.3(2)                                         >>>>>>>>>AtERF-7                                         --------->DEAR3(1)                                         >>>>>>>>>AtERF-2                                         >>>>>>>>>AtERF-1                                         >>>>>>>>>AtERF-5                                         --------->ANAC58                                         >>>>>>>>>AtERF-3                                         >>>>>>>>>AtERF-4                                        --------->RAP2.3(1)                                        --------->ERF1                                        --------->RRTF1(1)                                        --------->ATERF1(1)                                       <---------ATERF1(1)                                       --------->At4g35610                                  --------->O2                                  <---------O2                                  <---------TGA1a                                  --------->ANAC46                                  --------->TGA1a                                  --------->ANAC58                                   --------->At4g35610                                  --------->ANAC58                                   <---------ZAT2                               =============MYC_MYB    --------->ARR14(2)            <---------At4g35610                               ------->GAMYB<---------ATERF1(2)                      --------->ZAT2                              <---------ALFIN1<------NtERF2                         ------>NtERF2                 <---------At4g35610   <---------At4g35610                 --------->ATHB12 ----ICU4<------MYB83         <---------MYB52(2)       <---------ARR14(2)  -------->HAHB4 ---YAB1 <------MYB46(1)    ----------->RAV1(1)        ------->TEIL       <---------ATHB12 >YAB1  --------->MYB59   <---------At4g35610------>NtERF2 --------->LBD16<---------YAB1          <-- -ICU4  <---------TOE2(3) --------->At4g35610--------->ANAC58             --------->ICU4     <-------   ttttcgcgattaggtttagtgctgatgcagcaacacacgagagccgccagcaagatgaatccccaaacaaatgcaaatgattgtgccagcttcaagaatt  19975400  Previous    Next  AGI:  At3g53920.1    Description:  SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcription factor. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to sigma factor 3 [Sinapis alba] (GB:CAB83107.1); contains InterPro domain RNA polymerase sigma-70 factor; (InterPro:IPR000943); contains InterPro domain RNA polymerase sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262); conta Range:  from: 19971847    to: 19974927    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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