Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <-------GAMYB                                          --------->KAN4(2)                                         <---------ICU4                                        --------->ICU4                            ------>ZmHOX2a(2)     <---------MYB46(3)                          -------                          --------->ARR11(3)      --------->MYB52(2)             ----------->RAV1(1)                          <---------ARR11(3)      <-----------RAV1(1)           --------->ANAC46          <---------At4g35610 <----------DOF2 <---------YAB1                  --------->ANAC46<------          --------->At4g35610 ------>ZmHOX2a(1) <---------MYB52(1)      <---------YAB1        -------     --------->YAB1   --------->YAB1    <---------YAB1   ------>NtERF2<-----------GT1<XXXXXXXXXXXXXXX   tgaccaatgttaagctgaactgaagcatgatcctttgatgtgatcattctgtttgttgccgagctaaacaaattaccattacacaacaatagaatcagct  19966900      <---------AHL20(2)      --------->AHL20(2)     --------------->AGL15     --------->AHL20(2)                               <---------ANAC46     <---------------AGL15     <---------AHL20(2)                               <---------ANAC58 -->ZAT2  <---------ICU4    <---------ARR11(3)                --------->At4g35610 ---At4g35610               --------->ARR11(3)                <---------At4g35610                  -- -->At4g35610             <---------TOE2(3)                   <---------ZAT2    <---------ANAC58  <-- XXXXMIR3434         --------->At4g35610               ---------->DOF2 <-----------GT1       <-------   taggctacttaattaagacaattagcttaagattttaatcaaacgttacacagagaacaaagagagctgatatataccatttccttggaatgtagagctc  19967000       <---------ANAC58       ----------->RAV1(2)       <---------ANAC58    ----------->HVH21   <---------MYB59  ----------->RAV1(2)  <---------At4g35610  <---------O2  --------->At4g35610                                         --------->ANAC58  <---------bZIP60(2)                                         --------->ANAC58 --------->HVH21                                       ------>ZmHOX2a(2)                           <- ---------HVH21                                      <---------AGP1                    --------->At4g35610 --GLK1(1)                   <---------TOE2(3)--------->AHL20(2)                       <---------At4g35610   tgtgacctgacctgcgtcgttctccatttttgagatttagcttcaaaaaaaaatcgatctgagcaagtaaacaaacaaaaaaactaatcagatgagcaat  19967100                            --------->ATHB51                            <--------ATHB1                            --------->ATHB12          <---------AHL20(2)                            <---------ICU4         --------->AHL20(1)                           --------->ICU4          <---------AHL20(1)                           <---------YAB1       --------->AHL20(2)     --------->MYB52(1)                         --------->YAB1      --------->YAB1         --------->ANAC46 --------GLK1(2) <-------TEIL <---------WOX13(1)--------->YAB1 ---------->DOF2   agaacctcgaattaagagattcatcaagaataattgatcacattcaacaataatatataatcaacaaaagacacaacgagataactaattctgaaatcga  19967200                                                                                 >>>>>>>>>TBF1                  <---------MYB52(1)                                         <------ZmHOX2a(1)                 --------->TOE2(3)                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                ----------->GT1                                       --------->TOE2(2)                <---------ANAC58                                      --------->TOE1(2)                <---------ANAC58                                     ----------->RAV1(2)                <---------ANAC46                        --------->LBD16  <---------ANAC46               <-------TEIL                      --------->ARR11(3)  <---------TGA1a            <---------At4g35610                  <---------ARR11(3)  <---------At4g35610--------->GLK1(2)       --------->KAN4(2)            ---------->DOF2   <---------LBD16--------->At4g35610<---------ARR14(2)      --------->KAN4(1)             ===========================================bZIP_DOF --------->ARR14(2)      <---------KAN4(1)       <---------ZAT14  <---------YAB1        <---------ZAT2    <---------GLK1(2)    <---------GLK1(2)         --------->ZAT14  <---------TOE2(3)     --------->ZAT2 >>>>>>>>>TBF1   -   aacctagattattccgatgcgttaattagcaatacagtgaaaggagattaagatactacggagaaattctcacctgcgaggaagaagaagaatctgagag  19967300            ---------->DOF2          <------NtERF2         ------>NtERF2         ----------->RAV1(1)        --------->DEAR3(1)        ----------->HVH21       --------->RRTF1(1)       --------->ATERF1(1)       --------->RAP2.3(1)       <------NtERF2      <---------ATERF1(1)      ------>NtERF2      <---------RAP2.3(1)      <---------ERF1      <---------DEAR4(2)      <---------RRTF1(1)      <---------ORA47(2)     <---------ATERF1(2)     <---------RAP2.6(2)     <---------ANAC46                                                   <---------ANAC58     <---------RAP2.3(2)                                     --------->ZAT2     <---------RAP2.3(3)                                     --------->STY1(2)     <---------DEAR3(1)                                      <---------ZAT2     <---------DREB2C(2)                                     <---------STY1(2)     --------->ATERF1(2)               *TSS                <---------ZAT18     <---------RRTF1(3)             <---------TOE1(2)      --------->ZAT18     <---------RRTF1(2)   <---------ANAC58                <---------ANAC58             --------->ICU4    <---------LBD16       <---------ANAC58      <-----------TBP         <---------ANAC58 -------->ALFIN1 --------->CCA1(2)  <---------TOE2(2)     <---------ANAC58          <------ZmHOX2a(1)   aggtttggcggcgacaaagatagggtttgcttaattcataggtttattagatttatagtagcgagctagggtttgcttatttcataggaatgactactat  19967400                                   ----------------->AGL3                         --------->YAB1                    ------------>CBF     ---------->DOF2             <---------WOX13(1)    ------------>CBF            <------------CBF      <------ZmHOX2a(2)          <---------YAB1 --------->AHL20(2)                                                  <-------          --------->AHL20(2)     --------->ARR14(2)        <---------AHL20(2)             --------->YAB1          <---------AHL20(2)     <---------ARR14(2)       <---------AHL20(2)     <---------DAG2<-----       <----------DOF2  ----------->TBP --------->YAB1    --------->AHL20(2)     <----------DOF2    -   acccttcaacttttaattgaagagcaataaaaaccgatccaattagagcggtatacaaaattaaatcaaaccgaaatactaaactttttcaaccagaatt  19967500               <-----------GT1        <---------AHL20(2)       <---------MYB52(1)                 <---------ICU4      --------->At5g28300           ------>MYB46(1)      <-------GAMYB                 ------>MYB83     ----------->GT1        --------->ANAC46  ----------->RAV1(1)       --------->ANAC58               <------MYB46(1) ----------->HVH21   <---------ARR14(2)--------->TOE1(3)   <------MYB83 --------->At1g77200 --------->ARR14(2)--------->TOE2(3)  --------->MYB59 <---------ETT(1)  --------->LBD16--------->AtMYB61       --------->MYB46(2) --GLK1(2)  --------->YAB1  --------->ANAC58              --------->MYB111(1)                       < ----------AtSPL3<---------LBD16 --------->MYB46(3)       --------->MYB111(2)                  <----- -------->DEAR3(2)--------->ANAC46<---------MYB59       <---------MYB52(1)<-------TEIL    <----------   gtaccgacagttaattgtaaccggaatcgaacgtaaccaaaccataaatactggttcagtttggtagtaacttaagttcattcaatttgataacaaactt  19967600                                                            ----------------->AG                                                            <---------------AGL15                                                            --------------->AGL15                                                           <-----------------AG                                                           ----------------->AG                                                       <XXXXXXXXXXXXXXXXXXXXMIR830                                                      <---------DAG2                                                      <----------DOF2                                             <---------ANAC58          --------->MYB52(2)     <---------MYB46(3)                 <---------ARR11(3) ----------------->AGL1 --------->ATHB51                       <---------GLK1(2)  ----------------->AGL2                   - --------->ATHB12                       --------->ARR11(3) <-----------------AGL3                ---- ---------YAB1                          --------->ARR14(2) <-----------------AGL2            -------- -----DOF2                     ------->TEIL  <---------ANAC58        <---------ANAC46      --------->YAB1 --MYB.PH3(2)       <----------DOF2     <---------ARR14(2) <-----------------AGL1     <---------TOE2(3)   ttattattggttcaaatgtttgcttcatggatgaatttttcagattttcttgcatactttttcccaaaatggtttgtggtagacaattgagaatgataca  19967700                                           --------->GLK1(1)                                           <---------GLK1(1)                                         <------ZmHOX2a(1)                                     --------->ICU4                                   -------->HAHB4        <----------ARF1            <---------ICU4        ----------->HVH21          --------->YAB1                                                  --       <---------WOX13(1)         --------->ICU4                                                  ---     --------->ATHB12             <---------ATHB51                                               ---- -------->AHL20(2)              --------->YAB1                                                   ---- ----->ANAC46                ----------->GT1          <---------ANAC58      <----------DOF2     ----- ->CCA1(2)                <---------MYB52(1)          <---------ANAC58 <-----------GT1          <----   cataaaatggttgacaagtttgttctctgttttgtaataatgaggaattcagtttttcttgtttgtgaaattttgactctttatcgaaaccctctcaaga  19967800  Previous    Next  AGI:  At3g53890.1    Description:  40S ribosomal protein S21 (RPS21B). Identical to 40S ribosomal protein S21-1 (RPS21B) [Arabidopsis Thaliana] (GB:Q9M337); similar to 40S ribosomal protein S21 (RPS21C) [Arabidopsis thaliana] (TAIR:AT5G27700.1); similar to Ribosomal protein S21e [Medicago truncatula] (GB:ABD28456.2); similar to unknown [Populus trichocarpa] (GB:ABK93958.1); contains InterPro domain Ribosomal protein S21e; (InterPro:IPR001931) Range:  from: 19966322    to: 19967339    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g53900.1    Description:  uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative. similar to ATUK/UPRT1 (URIDINE KINASE/URACIL PHOSPHORIBOSYLTRANSFERASE 1), ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase [Arabidopsis thaliana] (TAIR:AT5G40870.1); similar to Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase) (GB:P93394); contains InterPro domain Uracil phosphoribosyl transferase; (InterPro:IPR005765); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836) Range:  from: 19967634    to: 19969823    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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