Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->DEAR3(1)                          --------->TOE2(3)         <-------TEIL                                        --------->ARR14(2)      <---------At4g35610                                    <---------ARR14(2)      --------->At4g35610                               ---------->DOF2   <---------At4g35610  --------->LBD16         <-----------HVH21 -->At4g35610      --------->MYB46(3)       ------>ZmHOX2a(2)--------->GLK1(2) ---At4g35610<---------ALFIN1     --------->TOE1(2) <------NtERF2------>ZmHOX2a(1)             <----- -DEAR3(1) ------->TEIL<---------ANAC46     ============================HOX2a_HOX2a           <------   ctcgtagcagatgcaccactcacagccgtagattaccctgcgatgatcccagtcgcctaaaagaatcctttgtactagtcgatgtgattttgttttcaac  19963800                                <---------ARR11(1)                                --------->ARR14(2)     ------>ZmHOX2a(1)                                <---------ARR14(2) --------->ARR14(2)                                <-----------ARR10  <---------ARR14(2)                                <---------TOE1(2)<-------MYC3                                ------->TEIL    <---------O2                               <---------ARR14(1)------->MYC3                        <---------ANAC58        <---------ANAC55(2)                        <---------GLK1(2)       --------->ANAC58            >>>>>>>>>WRKY18    <---------CCA1(2)--------->O2  <---------YAB1        ==================================================bZIP_DOF        <----------DOF2 <---------ANAC58        --------->TGA1a                                   --- ----At4g35610   <---------GLK1(2)              --------->ANAC55(2)                              ---- -----GT1  ----------->HVH21--------->HSFB2a(2) --------->ANAC58                     >>>>>>>>>>>>>>>>   tgttcttgctcttttgacagattatagcttctcgtatcttcgaatcagacacgtttcctctgttcttattcgaaaattatctcaagtttccattgttgaa  19963900                                                                                               <-----                                                       ----------->GT1                     <-------TEIL    <---------DAG2                                     <---------ANAC55(2)             --------->MYB59    <----------DOF2  <---------ICU4    <---------ATHB51--------->ANAC55(2)             -------------- ------>DAG2        <---------ATHB12   --------->AHL20(2)      <-----------GT1         -------------- ------>DOF2  --------->YAB1  <----------DOF2     --------->AHL20(2)                   <------------- >LFY        <-------TEIL<-----------------AGL1   <---------AHL20(2)             <---------------AGL15   aaagccctttttagtttcataaatcattctctctttggcaaattattctgaattaattcgtaatattacaagaccagtttgtccaaattttggtacatcc  19964000                                                                                       <-------MYC2                                                                                       ------->MYC3                                                                                       ------->MYC2                                                                                       <-------PIF5                                                                                       <-------MYC3                                                                                       ------->MYC4                                                                                       <-------MYC4                                                                                       ------->PIF5                                                                                      --------->ANAC55(2)                                                                                      ===============                                                                                      ===============                                                                                      ===============                                                                           ----------->GT1                  <-----------GT1                                     <---------ANAC58<---------TGA1a     <-----------GT1     <-----------GT1                              <---------ANAC58--------->TGA1a    --------->AHL20(2)<---------ICU4                             <---------ARR14(2)   =============== --TEIL          --------->ICU4                                  --------->ARR14(2)   =============== ->AtSPL8      <---------ICU4         --------->YAB1          --------->ANAC58        --------->O2 ->AtSPL3   ----------->GT1     <-----------GT1     <---------YAB1    <---------ANAC46<---------O2  < --AtSPL8   --------->YAB1   <---------ICU4<---------ANAC55(2)--------->ANAC58  <---------CCA1(2)   -   atcgaattaactaatcgtaattactaattactaattactctcatcacatgaaatatgaaaacacaagtatttgcgtttagttatatccacgtgtttgaat  19964100          ----------->GT1        <-------GAMYB       <-----------RAV1(1)       <---------MYB46(3)     <---------MYB52(1)   ------->GAMYB  <------------MYB.PH3(1)                                                           --------->CCA1(2)  --------->MYB46(3)                       --------->ETT(2)                         <------ZmHOX2a(2)  <------------AtMYB77                     <---------ETT(2)                        <---------ARR11(3) <---------At5g28300               --------->ANAC46                                --------->AGP1 -------->P <---------YAB1       <<<<<<<<<<E2Fc                               --------->HSFB2a(2) ==========MYC_MYB               <<<<<<<<<<E2Fa                         --------->DAG2 ==============MYC_MYB           <<<<<<<<<<E2Fd                       ---------->DOF2------>ZmHOX2a(2) =========MYC_MYB                <<<<<<<<<<E2Fe                   <---------ANAC46 --------->ARR11(3) ==============MYC_MYB          <-----------GT1                <----------DOF2<---------HSFB2a(2)   - ==========MYC_MYB             <-----------GT1     *TSS  ------>ZmHOX2a(1)<---------GLK1(2)       XXX -----------GT1         ------>NtERF2   <---------ANAC46 ==================================HOX2a_HOX2a -------->MYB52(1)     --------->DEAR3(1)--------->LBD16 ===================================HOX2a_HOX2a   actaaccgtctgttgttataaaactccgacgattttcccgctccgtcgacacaaacctcctccgtctttcgtaaaaggttctcgagatctaagtctcact  19964200                                                                          <---------LBD16                                                                         <---------LBD16                                                                     <------MYB46(1)                <                             <---------ARR14(2)                      <------MYB83                 <--                    --------->ANAC58                                <---------AtMYB61             <--                    --------->ANAC58                               <--------P                     ---                   --------->SPL7                          ------>ZmHOX2a(2)                   ------                  <------NtERF2<---------HSFB2a(1)        <------ZmHOX2a(2)               <---------At4g35610                  ------>NtERF2--------->HSFC1(2)        <---------ARR11(3)               --------->At4g35610                 <---------SPL7<---------HSFC1(2)        <---------ARR14(2)            <---------ZAT2                <---------RAP2.6(2)                      --------->ARR14(2)    <---------bZIP60(2)<--                <---------ANAC58                         --------->ARR11(3) ----------->HVH21--------                <---------ANAC46             --------->MYB52(1)    <---------MYB55(1)  --------->ZAT2                <---------ANAC58            <---------ALFIN1       <---------MYB52(1)  <---------At4g35610       ----------->HVH21     --------->ARR14(2) --------->LBD16  <---------MYB46(3)    --------->At4g35610 --------->DOF2<---------LBD16 --------->HSFB2a(1)   ---------->DOF2<---------MYB46(3)--------->ANAC58 XXXXXXXXXXXXXXXXX>MIR868    <---------GLK1(2)<---------LBD16    <---------DEAR3(2)   --------->ANAC58   tctaaagctctgacaatggcggacgaaatcggattcttccaactcaacaccggagcaaagatcccatcggttggtctcgggacatggcaagctgctcctg  19964300                       <---------At4g35610                       --------->At4g35610                       ------>NtERF2                      --------->DEAR3(1)                      --------->RAP2.3(2)                     --------->DEAR4(2)                     --------->RAP2.3(1)                     <------NtERF2                     --------->ATERF1(1)                    <---------ATERF1(1)                    <---------RAP2.3(1)                    --------->ABI4(1)                    ------>NtERF2                   --------->RAP2.3(3)                   <---------DEAR3(1)                   --------->DEAR3(1)                   <---------ATERF1(2)                   --------->RAP2.3(2)                   --------->ATERF1(2)                  <------NtERF2                  --------->ERF1                  --------->DEAR4(2)                  --------->ORA47(2)                  --------->RAP2.3(1)                  --------->RRTF1(1)                  --------->RAP2.6(1)                  --------->ATERF1(1)                 <---------ATERF1(1)                 <---------RAP2.3(1)                <---------DEAR3(1)                --------->DEAR3(1)               --------->ATERF1(1)             --------->DEAR3(1)                                                        <----------DOF2            --------->RAP2.3(1)                                                       ------>ZmHOX2a(2)           ------>NtERF2                                                              ===============           <---------ATERF1(1)                                                       ================          --------->ANAC58                                                           <------ZmHOX2a(2)          --------->ANAC58                                                          --------->AGP1          --------->DEAR3(1)                                                        --------->ARR11(3)         --------->ATERF1(1)                                                        <---------ARR11(3)        <---------ATERF1(1)                                                        <---------GLK1(1)  <-------GAMYB<------NtERF2      <-------TEIL                                ======================= <---------MYB46(3)--------->ANAC46                                           ------>ZmHOX2a(1) ------NtERF2<---------DEAR3(1)<---------HSFC1(2)                             ==============HOX2a_HOX2a -------ANAC46<---------ATERF1(1)--------->ARR14(2)                           ===============HOX2a_HOX2a -------ANAC58------>NtERF2   <---------TOE1(3)                              --------->TOE1(3) ------>bZIP60(1)------>NtERF2<---------TOE2(3)  <---------ANAC58            --------->TOE2(3) >ZmHOX2a(1)<------NtERF2  ----------->HVH21  <-----------GT1               ------>ZmHOX2a(2) -------ANAC58<-----------HVH21--------->HSFC1(2)<---------ANAC58      <---------WOX13(1) --->RAV1(2)--------->ATERF1(1)--------->HSFB2a(1)         <------------------------ANAC81--------->ATHB12   gcgtcgttggagacgccgtcgccgccgctgtgaaggttcttctgtgattttccgtctcatggtttctcatttgactgatccttagagatctttgattaga  19964400                                                       --------->ANAC55(2)                                                      <---------LBD16                   <------MYB83                      <-----------GT1                                -                   <------MYB46(1)                   --------->MYB52(1)                             <                  --------->MYB59                  <----------DOF2                                <--        ------>ZmHOX2a(1)                   ------>ZmHOX2a(2)                                     ---      <---------ICU4                      <---------ARR11(3)            <-------TEIL             ----      ------>ZmHOX2a(2)                   --------->ARR11(3) --------->ATHB12             --------->ARR11(3) ==============HOX2a_HOX2a             <--------P  <---------GLK1(1) <---------GLK1(1)    <---------ARR11(3) ==============HOX2a_HOX2a           <---------MYB46(3)<---------ANAC55(2)            --------->At4g35610 ============HOX2a_HOX2a<-----------GT1<---------WOX13(1)  <---------WOX13(1)      --------->At4g35610   tgttctgatccttacatagtttggtttttccctcaatattggttgatcttgggatttacggattgatttggaaattcgtttcagtagcagaagaacttaa  19964500                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              -------                                                                   <---------TOE2(3)    --------->GLK1(2)                                                   --------->CCA1(2)                    --------->ARR14(2)                                                  <---------ARR11(3)                    <---------ARR11(1)                                                  --------->ARR11(3)                    <---------ARR14(2)      <---------ANAC58                            <---------ARR14(2)                    ------->TEIL      <---------ANAC58                            --------->ARR14(2)                   <---------ARR14(1) <---------ICU4                                <---------------AGL15                   <---------GLK1(2) --------->YAB1                                ====================================================== <--------HAHB4                                --------------->AGL15              --------->ARR14(2) --------->ATHB12                    <---------ANAC58              <---------TOE1(3)------>ZmHOX2a(2) -------->ICU4          --------->GLK1(1)     <-----------------AGL1              <---------ARR14(2) ---------YAB1          <---------GLK1(1)   <----------DOF2 --------->AHL20(2)  --------->DEAR3(1) -------ICU4      --------->ARR14(2) <---------ANAC58       --------->YAB1    <---------At5g28300 ------>YAB1      <---------ARR14(2)--------->ATHB12       <---------ATHB12  <-----------GT1 <------- ----->ICU4   <---------At4g35610  <---------YAB1 --------->ARR11(1)----------->GT1<------ZmHOX2a(2)   taatcatttcgttttctgcagattggatatcagcatattgattgtgcttcaagatatggcaatgaaattgaggtaaaattcaccgatccgaatctgtatc  19964600                                         <---------ANAC58                                         --------->ANAC55(2)                                         <---------ANAC55(2)                                         <---------ANAC58                                      <---------MYB52(1)                                <<<<<<<<<AtERF-3                                ------>NtERF2                                <---------RAP2.3(1)                                <<<<<<<<<AtERF-4                               <---------RAP2.3(2)                               <---------RAP2.6(2)                              --------->RAP2.6(3)          --------------->AGL15<---------DEAR3(1)     --------->AHL20(2) ---ARR14(2)                 <-----------GT1--------->ATHB12 -->ARR14(2)                ----------->HVH21       --------------->AGL15 ---ARR11(3)             <----------DOF2--------->MYB52(2)      ----------->GT1 >TEIL    <---------------AGL15<---------RAP2.3(3)  <---------------AGL15 =========================MADS_MADS ----------->GT1 <----------DOF2        <---------YAB1 --------->ATHB12 --CCA1(2)==========================================================MADS_MADS  ------>ZmHOX2a(2)   ttccatagtttgcttcatatagttcatcttttgacggctcgttacttgatttgcctttatatagaacagtatatagtatgatcgttcttactcgattggc  19964700  Previous    Next  AGI:  At3g53870.1    Description:  40S ribosomal protein S3 (RPS3B). Identical to 40S ribosomal protein S3-2 (RPS3B) [Arabidopsis Thaliana] (GB:Q9M339); similar to 40S ribosomal protein S3 (RPS3A) [Arabidopsis thaliana] (TAIR:AT2G31610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65275.1); contains InterPro domain K Homology, type 2; (InterPro:IPR004044); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain Ribosomal protein S3, eukaryotic/archaeal; (InterPro:IPR005703); contains InterPro domain K Homology, prokaryotic type; (InterPro:IPR009019); contains InterPro domain Ribosomal protein S3, C-terminal; (InterPro:IPR001351) Range:  from: 19962466    to: 19963939    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g53880.1    Description:  aldo/keto reductase family protein. similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT2G37770.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15706.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) Range:  from: 19964151    to: 19966268    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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