Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <------NtERF2   <---------DEAR3(1)   <---------ANAC46  <------NtERF2          <---------bZIP60(2)  --------->ATERF1(1)    ----------->GT1 <-----------HVH21       <---------O2 ------>NtERF2           --------->At4g35610 ---------DEAR3(1)       <---------At4g35610  --------->GLK1(1) -------->DEAR3(1)   <-----------HVH21        <---------GLK1(1) -----NtERF2        --------->ALFIN1    <---------ANAC46 ------DEAR3(1)   <---------ANAC58      <---------ANAC58 ---At4g35610     <---------ANAC58      <---------ANAC58                     <---------ARR14(2) ---ZAT2   --------->ARR11(3)       <---------ANAC58                     --------->At5g28300 -->At4g35610     <---------ANAC46  <---------ANAC58                    ----------->GT1 -->ZAT2 ----------->ARR10 ----------->HVH21<------ZmHOX2a(1)         <---------------------WRI1   cggcgtcggagaagctctgggcgtgtgaggtgactagagcttgcgaggatttcatcttcttgtaacatcgtaatcggtgaattcgaggtcgatggtaaga  19962100                                        <---------ANAC46                       --------->ARR14(2)        ----------->RAV1(1)                   <-----------------AGL2     --------->ANAC46                   <-----------------AGL1     --------->ANAC58                 --------->ARR14(2)   <---------ZAT14    --------->ALFIN1                 <---------ARR14(2)   --------->ZAT14--------->At4g35610              <---------TOE1(3)    --------->At4g35610 <---------MYB46(3)                    <-------              <---------TOE2(3)    <---------At4g35610<---------DEAR3(1)               <---------ARR14(3)        <------MYB46(1)<---------ARR14(2) --------->ALFIN1       <-------TEIL          --------->ARR11(3)        <------MYB83 --------->LBD16 ------->GAMYB   <---------At4g35610     <------ZmHOX2a(1)       <---------TOE1(2)        <-------TEIL  --------->ANAC58--------->At4g35610      <---------ARR11(3)   cgtttgtgctaggtttagggttccgaatttggggttcaactgaagtggaagccacagcggtggaagatgcagcgttggaggaagacggaggtcttggggg  19962200                                                    <---------ATERF1(1)                                                   --------->DEAR3(1)                                                   <---------DEAR3(1)                                                  <------NtERF2                                        ------>NtERF2                                       --------->ANAC46                                       --------->ANAC58                                       <---------bZIP60(1)                                       --------->bZIP60(1)                                     <---------TGA2(2)          <---------YAB1                                     <---------ATERF1(1)      <---------ICU4                                    ----------->HVH21         --------->YAB1                                    ----------->TGA1------>NtERF2                                   <---------MYB52(2)        --------->ICU4                                  --------->ZAT2  --------->ATERF1(1)                                  <------NtERF2  <-----------HVH21                          <--------                                  <---------At4g35610 --------->LBD16                     <---------RVE1(1)                                  --------->At4g35610<------NtERF2                        <---------CCA1(1)                                  <---------ZAT2 <---------ATERF1(1)                     <---------GLK1(2)                                  ----------->RAV1(2)<---------LBD16*TSS                 <---------ARR11(3)       ---------->DOF2  <---------ZAT14--------->ANAC58--------->LBD16       <-------TEIL--------->ARR11(3) --ANAC46               --------->ZAT14<---------TGA2(1)<------NtERF2       --------->CCA1(2)   tttcaaggagaaagggttttgctcagtgttcttggcagctgacgccattgtcgtcgccggaaaatgatgacagagaagattcaaaatgcgagattttttt  19962300                                               <-----------GT1                                              <---------AHL20(2)                                          <---------AHL20(2)              <---------WOX13(1)          -------->ATHB1             <------------CBF             <--------HAHB4         <---------ANAC58                 --------->AHL20(2)         --------->ANAC55(2)              --------->ATHB51         <---------ANAC58                <---------ATHB51         <---------ANAC55(2)             --------->ICU4       <-----------GT1                   <---------ATHB12------------>CBF       <---------AHL20(2)              --------->WOX13(1)<---------YAB1   --------->AHL20(2)    <---------ICU4      <-------TEIL ------------>CBF <---------AHL20(2)  <---------ATHB51   -------- -AHL20(2)  --------->ATHB12  <---------PCF2  --------->AHL20(2)   <----------ID1 --------->MYB46(3)<   ttctcttaattacttgattgaaaacatccatgggcccaaaccaattatttaactattttatcaatgtatgggccaaattattcaacaaataggcccaaag  19962400                                --------->WRKY18(1)                              <------MYB46(1)                            ------>NtERF2                              <------MYB83                           --------->ANAC46                             --------->MYB59                      <---------ARR14(2)          -------                       --------------->AGL15                      --------->ARR14(2)<---------TOE1(3)                       <---------------AGL15                      *TSS   <---------At4g35610 --------                      <-----------------AGL1                  --------->HSFB2a(2)   <---------TOE2(3) -->DOF2              <-----------------AGL2              <----------DOF2--------->At4g35610 <------- ------------CBF <---------GLK1(2)   --------->YAB1   <---------CCA1(2) --------->DEAR3(1)<----------   gaaattggatgtgaaacctgattttctgaattaggtcaagtataagtactaatagcatctctttcgagattacgccgctcatttttagggtttcagatat  19962500    --------->GLK1(2)   <---------GLK1(2)   --------->ARR14(2)            --------->ARR14(2)   <---------ARR14(2)            <---------ARR14(2)  <---------At4g35610           --------->At4g35610        <---------ANAC46 ----------->ARR10              <---------At4g35610        <---------ANAC58 -->CCA1(2)             --------->RAP2.6(3)       ----------->GT1 ->ARR11(3)           ----------->TGA1           --------->DAG2 --ARR14(2)         --------->YAB1             ---------->DOF2  --------->GLK1(2)<----------DOF2----- -------AGL1        <---------ICU4<------ZmHOX2a(2)        <---------ANAC58   ---------->ID1   ------   aggcagattctcacatttgcaaacatgacgactcagatcagcaagaagagaaaggtgaattgtgtgattctgttcattttgttctttcaatggatttatc  19962600                                                         <---------ANAC46                                                      <---------DEAR3(1)                                                     <---------ORA47(1)                                                     <---------------------WRI1                                                     --------->SPL7                                                    ------>NtERF2                                                   ----------->HVH21                                <---------YAB1     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                             --------->GLK1(2)     <---------SPL7                            --------->ARR11(3)    <---------ANAC46                          <---------TOE2(3)       <---------ANAC58 --------->At4g35610     <-----------------AGL1 <---------ARR11(3)    <---------ANAC58--------->ANAC46             xxxxxx ---->YAB1                ----------->ARR10      --------->At4g35610                <-------TEIL    < ---->ID1             --------->REM1(2)          <---------At4g35610            <---------TOE2(3)   <   gtattggaactgttttggtaactgtgttgagattttgattttgtagtttgtagcggacggtgtgttctacgctgaattgaatgaggttcttacaagagag  19962700                                                                                    --------->KAN4(2)                                                                                   --------->HSFB2a(1)                                                                                   <---------HSFC1(2)                                                                                   --------->HSFC1(2)                                                                                   <---------HSFB2a(1)                                                                                   <---------KAN4(1)                                                                        --------->ANAC55(2)                                                                        --------->ANAC58          <-------GAMYB                                                 --------->ANAC55(1)         <---------MYB46(3)                                           --------->REM1(1)         <------MYB46(1)                 ------>ZmHOX2a(1)   <---------YAB1        --------->KAN4(1)         <------MYB83           <---------ZAT6               --------->At4g35610  <---------KAN4(2)         ----------->GT1       <---------TOE2(3)      <---------GLK1(2) --------->ANAC58      <------ZmHOX2a(1)  <---------TOE2(3)     <------ZmHOX2a(1) --------->AGP1  <---------GLK1(2) xxxxxxxxxxxxxxxxx>smallRNA(i2)<---------TOE1(3)    <---------TOE2(3) <---------ALFIN1 ---------At4g35610      <---------TOE1(3)  --------->YAB1<---------YAB1--------->ANAC46   <---------MYB52(1) ---------ZAT2      <---------ANAC46  --------------->AGL15--------->YAB1     --------->YAB1   ctagcagaggatggttactctggtgttgaggttagggttactcctatgaggactgagattatcatcagagctacacgtactcagaatgttctcggtatgt  19962800                 --------->ATHB12                 <--------HAHB4                 <---------ICU4                     <---------YAB1             <------ZmHOX2a(1)                 --------->YAB1      --------->MYB52(2)          <---------At4g35610                <---------ATHB12   <---------MYB52(1) >>>>>>>>>ARR2           ----------->GT1    ------>ZmHOX2a(2)            --------->ANAC46   <---------AHL20(2)       --------->ALFIN1  <---------ARR11(3)         --------->YAB1 --------->At5g28300  --------->At4g35610  --------->ARR11(3)        <---------YAB1 ----------->GT1     <-----------RAV1(2)   ttttgatcttcgagcttaatcatttcttctattatacggtagtgactgtaaaatttgattgtatttcaggtgagaaggggaggagaattagggaattgac  19962900                                            <---------DAG2                                            <----------DOF2                                     <---------ZAT14                                     --------->ZAT14                              ----------->HVH21                            <---------At4g35610                 <-------TEIL --------->WRKY12                  ----------->RAV1(1)                --------->GLK1(2)   --------->ALFIN1           --------->MYB46(3)                --------->CCA1(2)  >>>>>>>>>TAC1         ----------->GT1                           <-         <---------At4g35610--------->At4g35610     ------>NtERF2  ------->GAMYB        <-----------RAV1(2)   ttcccttgttcagaagagattcaagtttccagttgacagtgttgagctttatgccgagaaggttaacaacagaggtctctgtgccatcgctcaggctgag  19963000  Previous    Next  AGI:  At3g53860.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64768.1) Range:  from: 19960540    to: 19962268    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g53870.1    Description:  40S ribosomal protein S3 (RPS3B). Identical to 40S ribosomal protein S3-2 (RPS3B) [Arabidopsis Thaliana] (GB:Q9M339); similar to 40S ribosomal protein S3 (RPS3A) [Arabidopsis thaliana] (TAIR:AT2G31610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65275.1); contains InterPro domain K Homology, type 2; (InterPro:IPR004044); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain Ribosomal protein S3, eukaryotic/archaeal; (InterPro:IPR005703); contains InterPro domain K Homology, prokaryotic type; (InterPro:IPR009019); contains InterPro domain Ribosomal protein S3, C-terminal; (InterPro:IPR001351) Range:  from: 19962466    to: 19963939    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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