Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------AHL20(2)       <---------YAB1                <---------ICU4                 ----------->GT1      <---------AHL20(1)          --------->YAB1      --------->ARR11(3) <---------YAB1      --------->AHL20(2)         <---------ZAT6      <---------At4g35610--------->AHL20(2)        ---      --------->AHL20(1)      <-----------GT1   <---------ZAT14 <-------MYC3                    <<<<< ---DOF2                 <---------AHL20(2) --------->ZAT6      ------->MYC3               --------->TOE2(3)   gagaaaaatataattcagaaaacgttttaaatttactgataatttcagactactcagatgttgacatgtgttgttaaaattgagttcaaattttcttaaa  19939100                                                                        <---------ANAC46                                                                       <---------LBD16                                                                   ---------->DOF2                                                                --------->TOE1(3)                                                                --------->TOE2(3)                                                                <----------DOF2               <------                                                             ------>MYB83                     <------                                                             ------>MYB46(1)          --------->ANAC46                                                           <---------MYB59          <-----------GT1                                                          --------->ANAC58      <-----------TBP  <--- ------>ATHB12 ---------->DOF2                            --------->ANAC46<------NtERF2       ------- <<<<<<<<<<<<LFY           <---------TOE2(3)              --------->ANAC58<-------GAMYB      <-------   acattggagtttttttgtaaagaatttttgtggtttcatggggtttttgttcagacacaaacccaactttaaaggcggatgtttttatacggctcatatc  19939200     <---------AHL20(2)    <---------AHL20(1)    --------->AHL20(1)    <---------ARR11(3) ---ARR11(1) ---ARR11(3)      --------->ANAC58            <---------DAG2                                  ------- -------DOF2      --------->ANAC58            <----------DOF2                            --------->DAG2 -->ARR11(3)      --------->ANAC46 --------->TOE2(3)   --------->HSFB2a(2)     <---------At4g35610 --CCA1(2)<-----------GT1       ----------->RAV1(1)<----------DOF2--------->YAB1     --------->YAB1   tttctatatattttacttccacacaaacaaattccaacataaatctcacttttctttctcgcacaaaatcaaaatcgtttcagataatcaaaaggtttgt  19939300                                               <---------ICU4                                           ------>ZmHOX2a(1)                  ------->TEIL                                          --------->TOE2(3)                <---------YAB1                                       <-----------GT1                 --------->GLK1(1)           <-                                      --------->YAB1                   <---------GLK1(1)           <-                     ------->TEIL    <---------ATHB12                 <---------ARR14(2)           <-               ----------->HVH21 ------------>CBF<---------YAB1       --------->ARR14(2)       <----- ---->GT1      ----------->TGA1<-----------GT1<---------YAB1  <---------CCA1(2) --------->ATHB12  ---   gaatttgtatgagatttgtgacgaatgtttgtttttccaattatcctcatcatttttgtgtctcatatatcggatatatgaatgtttgataaaccgagat  19939400                                               <---------MYB52(2)                                              --------->ANAC58                                              --------->ANAC58                                              --------->ANAC46       --------->ETT(2)                                   <---------ANAC58                 <------NtERF2         <---------MYB46(3)       <-----------RAV1(2)     <-------GAMYB<---------AtLEC2      <---------ANAC46     ============== --------->ATERF1(1) ------------>CBF   <-------GAMYB          --------->ALFIN1        ------>ZmHOX2a(1) --------ANAC58     --------->ANAC58   --------->ALFIN1        <---------AtMYB61       <-----------RAV1(1) --------ANAC46     --------->ANAC58   <-----------RAV1(1)    <---------ZAT14    ------>MYB83 --------ANAC58<---------TOE2(3)   <---------ANAC58      --------->ZAT14         ------>MYB46(1) -------CBF    <---------TOE1(3)   <---------ANAC46      <---------ZAT14       <---------MYB59  ----- ------>ZAT18 --------->MYB52(1)<---------MYB52(1)       --------->ZAT18    <-----------GT1     =====   tgcgcaggctcaggcttaacgtaagcaatttgcagttgtgtgtgttgcaaggaacatggtggactgtggtgtcgatatttaccaacttcctgttgttcct  19939500                     --------->ANAC58                     --------->ANAC58                    --------->ZAT18                    <---------ZAT18                  <---------SPL7                  --------->ZAT14         <------ZmHOX2a(2)                 <---------AHL20(2)        --------->ARR11(3)--------->ARR14(2)        <---------ARR11(3)<---------ARR14(2)<---------AHL20(2) ===============HOX2a_HOX2a                --------->AHL20(2)                              <---------AHL20(2) ->ZmHOX2a(1)  --------->LBD16         <---------YAB1           <-------TEIL          ------->TEIL ===============HOX2a_HOX2a <-------TEIL--------->ATHB12    <-------TEIL  <---------ZAT18<----------DOF2   agggcatgtagatcacccagagtacgcatatacattcgaacatgatttattttgccataagttacatacattttggctcactcgattgcatcttttattt  19939600                                                                                 <---------O2                                                                                 <---------ZAT2                                                                                 --------->O2                                                                                 --------->At4g35610                                                                                 ====================                                                                                 --------->ZAT2                                                                                 --------->TGA1a                                                                           --------->GLK1(2)                                                                          <---------GLK1(2)                                                                          --------->ARR11(3)                                                                          <---------ARR14(2)                                                                         --------->HSFB2a(1)                                                                         --------->HSFC1(2)                                                                         <---------HSFC1(2)                       <---------ICU4          <---------TOE1(1)         <---------HSFB2a(1)              ----------->GT1               --------->GLK1(1)           ----------->ARR10             --------->ANAC58           ------>ZmHOX2a(2)          <---------ANAC58             --------->ANAC58         --------->ARR11(3)           <---------ANAC58           <-----------RAV1(2)        --------->ARR14(2)           <---------ANAC46    ----------->GT1         --------->ANAC58         ---------->DOF2             <---------O2--------->ARR14(2)         --------->ANAC58<---------YAB1<------ZmHOX2a(2)      --------->O2<---------ARR11(3)      ----------->HVH21--------->YAB1 <---------ARR14(2)      <---------TGA1a    <---------At4g35610    --------->LBD16   --------->ICU4  <---------ARR11(3)      --------->TGA1a  <-----------RAV1(2)   <---------LBD16  <---------ICU4======================================bZIP_DOF <---------TGA1a   tttatccagggacgcaggctaaaaattatgagaaaacaaagatcggagttcgaggttttagcccaagtggctggaagattctcaggtgagcgtaaaaacc  19939700                                                                                                    -                                                                                                  <--                                                                                                 ----                       <XXXXXXXXXXXXXXXXXXXXXXXMIR836                                           -----                      --------->ANAC58                                                          -----                      --------->ANAC58                                                          -----                      --------->ANAC55(2)                                                       -----              <---------MYB52(1)                                                           ----------             <-------GAMYB                            <------NtERF2                    <---------TOE1(3)            <---------MYB46(3)   <----------ID1  <-----------RAV1(1)                   <---------TOE2(3)   <---------YAB1     --------->ANAC46   <------ZmHOX2a(1)               <<<<<<<<<<<<<<<<<LFY   ----- ====================MYC_MYB---------->DOF2    <---------ICU4 <---------ARR11(3)   ------------------   gaattgttatcggctcgttggctcacgaaacaaaggagacgaaggacgataatgtcgtcgtcaataacttcttggagacaatggaagttgaggttaagcc  19939800 ----------->RAV1(2) ------->P -------ALFIN1                                                                     --------->ANAC58 ----->LBD16                                                                  --------->WOX13(1) ---->ANAC58            <---------At4g35610                               --------->ANAC46 ---->RAP2.6(2)        <---------TOE1(2)                         --------->AtLEC2  --------->ANAC58 ---->ANAC46   <---------HSFB2a(1)                             <---------ANAC58  --------->YAB1 ---->ANAC58  --------->GLK1(2)                   --------->ARR11(3)      --------->ANAC58 >DOF2  <---------HSFB2a(2)                      <---------At4g35610<---------MYB59--------->ANAC46 ---->RAP2.3(2)--------->HSFB2a(1)      <------ZmHOX2a(1)      <---------ANAC58 <---------ATHB12   <- ----->TaNAC69(2)     <-----------RAV1(2)     <--------P---------->ID1    --------->ANAC58       <---   gcaacctggtctggagaacctttctcaggtgttattgtctaaggactggttagctcttggcccttccatgcctaactcgccaatcacacaagaagaaaac  19939900                            --------->ANAC58                            --------->ANAC58                         <------ZmHOX2a(2)                        --------->ARR11(3)                  ----------->GT1                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)               <---------ARR11(3)           --------------->AGL15          <-----------------AGL1          ----------------->AG          ----------------->AGL2          ----------------->AGL3                                        <----------DOF2          ================================================================MADS_MADS          ----------------->AGL1    <---------CCA1(2)              ---------->DOF2    <-----------GT1     <---------ARR11(3)                      <---------TOE2(3)                ---- --------YAB1  --------->ARR14(2) --------->YAB1          <---------------AGL15                 <---- -------DOF2   <---------ARR14(2)<---------YAB1   <----------DOF2 <------ZmHOX2a(1)             <----   tttgattcacgttccaagatcggtaagatcaagtcatcatatcactcgcgaactttacttatatataaggaaagcttttttacagagaaatgaagaatat  19940000  Previous    Next  AGI:  At3g53790.1    Description:  TRFL4 (TRF-LIKE 4); DNA binding. similar to TRFL2 (TRF-LIKE 2), DNA binding [Arabidopsis thaliana] (TAIR:AT1G07540.1); similar to initiator binding protein [Zea mays] (GB:CAA55691.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 19939456    to: 19941245    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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