Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ---------->DOF2                                                                    ----------->RAV1(1)                                           --------->YAB1          <---------ZAT18                                        --------->YAB1             --------->ZAT18                                 --------->ANAC58                  --------->RAP2.3(3)          -----                                 --------->ANAC58                --------->PCF2      --------->ZAT6                              --------->WRKY18(1)         <----------DOF2      <-------TEIL     ----- >DOF2        ---------->DOF2<-----------HVH21            <---------DAG2      --------->CCA1(2) -----   atgaactacacattcacaaaggtgaagaattcgtcaagcctacaataacaaatgtctatactttatgagcccacaaagagatacatcacactatctgaac  19925600               --------->YAB1           <---------MYB46(2)           <---------MYB111(1)           <---------MYB59         -------->P     --------->ANAC58                                                                         -------     --------->ANAC58 <---------HSFB2a(2)                              ----------->GT1       <-------   ---------->DOF2    --------->HSFB2a(2)                             --------->DAG2         <------- ---->ANAC58 ------>MYB83                                 <-----------GT1                    <------- ---->ANAC46 --------->MYB52(1)                         <---------AHL20(2)               ============ ---->ANAC58 ------>MYB46(1)            ------->TEIL   --------->YAB1---------->DOF2     <----------DOF2   gaaactaaagcaacctaacatagtctagaaactactaaaatgaatgtttcaaaacaattttaacagaaggcaaaagtgaaacaacatactcctttgcgag  19925700                                                             --------->MYB52(1)                                                            --------->MYB52(1)                                                          --------->MYB46(3)                                                       ------->GAMYB                    --------->TGA1a                   --------->MYB46(3)                    <---------O2                      <---------MYB52(2)                    <---------TGA1a                 --------->MYB52(1)       --------->ALFIN1                             ------>MYB46(1)     <---------TOE1(1)                              ------>MYB83     <---------TOE2(1)   ----------->GT1          <---------MYB55(2)   <------ZmHOX2a(1)--------->O2                  --------->MYB46(3) -->HSFB2a(2)       --------->ANAC46              ------->GAMYB --ANAC46           ======================================MYC_MYB                           --------- --ANAC58           ======================================MYC_MYB                           --------- --ANAC58<------ZmHOX2a(1)          <-----------HVH21 <---------MYB55(2)                    <-------- =============================bZIP_DOF           --------->ANAC46                      <---------At4g35610   aacgaggacgaggagctaattcacgtctggtaacaacatgtcccttgttcaacccaacgaacaaaccggtcttcacttgtggagttgtcatcttctgtaa  19925800          --------->MYB46(3)                                  --------->ARR14(2)          <---------MYB52(2)                                  <---------ARR14(2)         <---------ZAT6 >HSFB2a(2)                                              --------->CCA1(2)               ----------->GT1 -->GT1<----------ID1                                 --------->ANAC46          --------->CCA1(2)  -- -HSFB2a(2)------->GAMYB                          <-----------GT1          ---------->DOF2       ----   atttcatagacaacaaacaaacaaaactttctattcaatacaaaatcaaattttacaagagacggattcagagataataaagagatgaagagagttaaat  19925900                                 ===============HOX2a_HOX2a                                 ------>ZmHOX2a(2)                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           ------>NtERF2                      ------>MYB83                                   --------->RAP2.3(3)                      ------>MYB46(1)          <---------MYB46(3)    --------->DEAR3(1)                    <---------MYB111(1)        --------->MYB55(2)   --------->RAP2.3(1)                    <---------MYB59           <---------AtMYB61     --------->ATERF1(1)                   --------->ANAC55(2)        --------->ALFIN1      --------->ORA47(2)                   <---------ANAC55(2)       <---------MYB52(1)     <------NtERF2                --------->ARR11(3)          --------->LBD16        <---------ATERF1(1)                <---------ARR11(3)        <---------LBD16          ------>NtERF2<-----------GT1      <---------WOX13(1)<---------ATHB12 ------>ZmHOX2a(1)        <---------DEAR3(1) -------->DOF2  <---------ARR14(2)  <---------At4g35610         <------ZmHOX2a(1)     *TSS      <---- ----->YAB1     --------->ARR14(2)  <---------ZAT2       ---------->DOF2     <---------ICU4 <--------   caaaagggattgatagaagatacctaatcaatggatcgagctcctccggtggttcagacaaaagaaggacgccgactgaaaattacatttttgtatatat  19926000                                        --------->ATHB12                          <---------ZAT18<------------CBF                    --------->TOE2(3)  <---------YAB1                         --------->AHL20(2) -------GT1--------->ANAC58           <-----------TBP--------->AHL20(2)     ----------->GT1        <- ---TBP    --------->ANAC58          <----------DOF2 <---------AHL20(2)   ---------->DOF2     <------   accagagagactcaagaaaaaaccctagtccagtttgggcttttattgggccttataaattttgggtcagttttgacaaagtaaatacaaggctatagct  19926100                      <---------At5g28300                     <-----------GT1                 --------->AHL20(2)                 <---------AHL20(2)                 <---------ICU4                 --------->ATHB51             --------->AHL20(2)            <---------WOX13(1)       <---------ANAC58                            <------NtERF2                                    <       <---------ANAC58                     ------->GAMYB                                           -       <---------ANAC55(2)               --------->MYB52(1)                            --------->ANAC58       --------->ANAC55(2)            --------->TOE2(3)                    --------->DAG2  --------->ANAC58 ---------DOF2  --------->ICU4        --------->TOE1(3) ----------->GT1  ---------->DOF2   --------->ANAC58 ---At4g35610<---------AHL20(2)  ---------->DOF2------>NtERF2   <----------ID1         --------->ANAC58   gctttgctaacgtgattaattatttaccatttaccaaaagccttaaccgaggccgagcgagaaaaaaaaacaaaaaaaaggtagagggcaagaacgtcat  19926200                                                                       <---------ANAC58                                                                     <-----------GT1        <------------CBF           <---------ARR14(2)             *TSS <---------ANAC58    --------->ANAC46               --------->ARR14(2)           <---------DAG2    --------->ANAC58         --------->ALFIN1                   <----------DOF2    --------->ANAC58       --------->ALFIN1                  <-----------GT1 ---------HSFB2a(2)        <---------ANAC58              <-----------TBP                      ------- -------->HSFB2a(2)        <---------ANAC58            <---------MYB52(1)         <---------MYB52(1)   ttccacaaggaattgaatcggaaaacgaggtgtgccgaattcgaagcctttggacccgtttttatacttttttacttgccattcgtttttttttgttcat  19926300                          <---------GLK1(1)                     --------------------->WRI1             --------->ANAC55(2)                                            ------>NtERF2             <---------ANAC55(2)                                        ------>ZmHOX2a(1)             <---------ANAC46                                         <---------At4g35610             <---------ANAC58                                         ----------->RAV1(2)             <---------ANAC58<-----------GT1                        <-----------GT1  <------NtERF2      <----------DOF2        <---------MYB59      <---------GLK1(1)      <---------AHL20(2) -->ATHB12   <---------ANAC55(1) ------>ZmHOX2a(1)               --------->GLK1(1)      --------->AHL20(2)   tggcctcatttgattacttgtttctttgatttctccttccatagaaccgaattgttttcagtctgagatttctcctgccgagagaacgattttaatctat  19926400                                                         <---------MYB52(1)                                                        --------->TOE2(3)                                                       ----------->GT1                                                    --------->GLK1(1)                                                    <---------GLK1(1)                                               <---------LBD16                                               ------>ZmHOX2a(2)                                             <---------ARR14(2)                                             --------->ARR14(2)                                           ------>ZmHOX2a(1)                                         <-----------------AGL1                                         ----------------->AGL1   <---------WOX13(1)                                         ----------->RAV1(2)   <---------YAB1                                    <----------DOF2<---------ARR14(2)                  <---------MYB59 ---------->ID1   --------->ARR14(2)                          <-----  ------>ZmHOX2a(1)              <-----------GT1 --------->LBD16--------->ATHB12  <-------TEIL ------   tttcctcggtaatgttatagcctaatttgtgtttttttctttttcctgatccggatatcgttattctgattgacaattgtcagtttcatcttctattctg  19926500  Previous    Next  AGI:  At3g53740.1    Description:  60S ribosomal protein L36 (RPL36B). Identical to 60S ribosomal protein L36-2 (RPL36B) [Arabidopsis Thaliana] (GB:Q9M352;GB:Q8L5U3); similar to 60S ribosomal protein L36 (RPL36A) [Arabidopsis thaliana] (TAIR:AT2G37600.1); similar to 60S ribosomal protein L36 (RPL36A) [Arabidopsis thaliana] (TAIR:AT2G37600.2); similar to ribosomal protein L36 [Triticum aestivum] (GB:AAW50980.1); contains InterPro domain Ribosomal protein L36e; (InterPro:IPR000509) Range:  from: 19924720    to: 19925986    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g53750.1    Description:  ACT3 (ACTIN 3); structural constituent of cytoskeleton. Identical to Actin-1/3 (ACT3) [Arabidopsis Thaliana] (GB:P10671;GB:P53493;GB:Q9M351); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.1); similar to ACT12 (ACTIN-12), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G46520.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to actin [Striga asiatica] (GB:AAC49651.1); similar to Actin (GB:O81221); similar to actin [Striga asiatica] (GB:AAC49652.1); contains InterPro domain Actin/actin-like; (I Range:  from: 19926266    to: 19928619    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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