Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->YAB1                                                                    ----------->GT1                 <---------TOE2(3)                                  ------>ZmHOX2a(2)              <-         <---------ANAC58                                          <------ZmHOX2a(2)          -------         <---------ANAC58                                       <---------YAB1   ====================   --------->GLK1(2)                                          --------->YAB1     ------->GAMYB-------  <---------ARR14(2)              <--------P         --------->HSFC1(2)         --------->ANAC46 ====  --------->ARR14(2)         <------ZmHOX2a(1)       <---------HSFC1(2)  --------->ICU4     <--------  <---------GLK1(2)    <---------ANAC46  --------->LBD16     <------ZmHOX2a(2)--------->MYB52(1) <---   tggagattctgacttgattacggttttgtgaggagggtagacccagagacgttgaagtttccgatcacgatcgtaattctcaacggaaatagcatcacgc  19910900            <-------TEIL            <---------ZAT14          <-------MYC4          <-------MYC3          <-------PIF5          ------->MYC2          <-------MYC2          ------->MYC3          ------->PIF5          ------->MYC4         <---------TGA1a         --------->TGA1a         --------->O2       <---------ALFIN1      --------->MYB46(3)                                     <---------DEAR3(1)    --------->ARR14(2)                                      <------NtERF2                ------->GAMYB    <---------ARR14(2)                                     <-----------HVH21            --------->MYB46(3) --------->HSFB2a(2)                                       <---------ATERF1(1)      <------ZmHOX2a(2) --------ANAC46                                            ------>NtERF2           <---------ARR11(3) -->ANAC58<-------PIF4    --------->ALFIN1                --------->DEAR3(1) --------->LBD16       -- ==================MYC_MYB<---------ANAC46          --------->ATHB51         <---------HSFB2a(2)   <- -->ANAC58------->PIF4   <------ZmHOX2a(1)          <---------ICU4           --------->HSFB2a(2)  <-- ==================bZIP_DOF                        --------->ICU4          <---------LBD16       <--- -ALFIN1 <---------O2 <------ZmHOX2a(1)       --------->YAB1--------->ATERF1(1)    --------->ARR11(3) -------DOF2--------->ZAT14 --------->ALFIN1--------->MYB52(1) <------NtERF2<---------LBD16<------ZmHOX2a(2)   tttgtggaaccacgtgcagagagaggaggagtggagaagatgaaacaatcggaattatcgccgtcgtcgtttacatctccgggaagatcaacgatcactg  19911000               <------NtERF2              ------>NtERF2             <---------bZIP60(1)             <---------ETT(2)            ---------->ID1          <-----------RAV1(1)          --------->ALFIN1     --------->MYB52(1)    ----------->HVH21                       <---------ANAC58    ------->GAMYB                      <------MYB83  --------->At4g35610                 --------->MYB59  <---------At4g35610       -------->HAHB4  <---------ANAC58 <---------DOF5.7(2)       <---------YAB1   <---------ANAC46 ------->DOF5.7(2)         --------->ICU4  *TSS               <---------TOE1(3)              <------- --------MYB52(1)        --------->YAB1<------MYB46(1)--------->YAB1    ------->TEIL    <-----------GT1 --------DOF2--------->ETT(2)         <---------TOE2(3)       <---------TOE2(3)     <---------DAG2<-- ------ANAC46--------->bZIP60(1) <---------YAB1  ------------>CBF    <---------YAB1 <----------DOF2<-   cgttaactgactgtgtcgccatttcaaaaatgattctaattaggtttcgtccacaatcagaattagggtttatgaatcacttactactttttgctctttt  19911100                                                                                <---------LBD16     <                                                                           <------------CBF         <                                                                          <---------ICU4           <-                                                                          -------->HAHB4       ------                                                                          <--------ATHB1       ------                                                                          --------->ATHB51    -------                                                                          --------->YAB1    <--------                                                                         --------->ICU4     ---------                                                                         <---------ATHB51   ---------                                                                      <---------AHL20(2)--------->ANAC58      <-----------GT1                   <---------ANAC58             --------->AHL20(2) --------->ANAC58 ---DOF2 <----------DOF2         <---------DAG2         --------->TOE1(3)<---------AHL20(2) --------- -------AtLEC2                   <----------DOF2        --------->TOE2(3)<---------YAB1 <---------MYB52(2) -----------CBF      ---------->DOF2    <---------ANAC58<---------MYB59--------->YAB1<-------TEIL  <-   gcattgaatcactttccattttccaaagcgtctcactttttggcttactgctaaaaaacctaaatcgaatttttaataattgtccggttcacgaacgaac  19911200    <---------MYB52(1)   <-------GAMYB  <------MYB46(1)  <------MYB83  <---------MYB46(3)  <---------DEAR3(2) <---------DEAR3(1) --------P ---------MYB55(1) ----------HVH21          ---------->DOF2 ->TEIL                 ------>ZmHOX2a(1) --->MYB52(1)          --------->TOE2(3) -->MYB52(1)           --------->TOE1(3) -MYB52(2)      --------->YAB1                    --------->YAB1 >ANAC58      <------------CBF           <---------ANAC58 >ANAC58    --------->AHL20(2)           <---------ANAC58     <---------HSFB2a(2) <----------DOF2 >MYB46(3)  <---------AHL20(2)        ---------->ID1         <---------LBD16     <---------ANAC58 --------MYB52(1)    --------->ICU4 <-----------RAV1(1)   *TSS--------->HSFB2a(2)<---------ANAC58   cggtcggttagcaaaaaattgtaatccttaaacccattttgttgcttcactctcatcatcttctctggaaactgaaaactatggctttctcttcatgtct  19911300                                           <---------ICU4                                          <---------YAB1                                          <---------ATHB12                                 --------->TOE1(3)                                 --------->TOE2(3)                      ------>ZmHOX2a(1)          -- --------->GLK1(2)              --------->ZAT6                       ------>ZmHOX2a(1)  ------>ZmHOX2a(1)   caaattctatccattttctatctctcaagctgtaaccctaactcatcattccttctctctcaatctaactcctccttcttctaccatctccttcgcttct  19911400                                                                         <---------ALFIN1                                                                        ------>NtERF2                                                                        <------NtERF2                                                                        <---------ZAT18                                                                       --------->RAP2.6(2)                                                                       --------->DEAR3(1)                                                                       --------->RRTF1(3)                                                                       --------->RAP2.3(2)                                                                       --------->RRTF1(2)         <---------At4g35610                                          --------->ANAC46         --------->At4g35610                                          --------->RAP2.3(1)         --------->ZAT2                                               --------->ATERF1(1)      --------->ZAT2                 --------->HSFB2a(2)             ------>NtERF2      --------->At4g35610        <---------GLK1(2)                   --------->LBD16      <---------ZAT2           --------->ANAC58                <---------ICU4   ---------->ID1      <---------At4g35610      --------->ANAC58  --------->LBD16    --------->ANAC46<----------DOF2 ---->ZmHOX2a(1)  ------>ZmHOX2a(1)  <---------HSFB2a(2)      <---------YAB1    <---------CCA1(2)   cctcactcagcagctctctcctctaccgatgtcaagcttctcgactcactccgtagccagcctgatgattccgccgcacttcgtctctttaatctggcct  19911500                                                            <------MYB83                                                            <------MYB46(1)                 ----------->RAV1(2)                    <------MYB46(1)                 <---------At4g35610            ------>ZmHOX2a(1)    --------->MYB52(2)         <<<<<<<<<SARD1                   --------->GLK1(2) <---------DEAR3(2)         <<<<<<<<<CBP60g                 <---------GLK1(2)<---------ORA47(1)   --------->ANAC58   ------->TEIL--------->ANAC46   <---------MYB52(1)                 --------->HSFB2a(1)   <----------ID1--------->At4g35610     --------->ARR14(2)--------->MYB59              <---------HSFB2a(1)   --------->ANAC58----------->HVH21   ----------->ARR10<------MYB83<-------TEIL    ----------->GT1   ctaagaagccaaatttctcacctgaacctgctctatacgaagagattctccttcggctaggtcggtctggttcgtttgatgacatgaagaaaattcttga  19911600                        --------------->AtSPL8                        <---------------AtSPL3                        <---------------AtSPL8                                                      <              --------->At4g35610                                                                  <-              <---------At4g35610                                                               <----            --------->HSFB2a(2)                                                              <-------            <---------HSFB2a(2)        <---------ANAC58                              --------->ARR11(3)            <-----------RAV1(2)        <---------ANAC58                              <---------ARR11(3)        --------->GLK1(1)           <----------DOF2         <---------YAB1         ----------->ARR10-   agacatgaagagttccagatgcgaaatgggtacttctactttcttgatattaatcgagagttatgctcagttcgaattgcaagatgagattttaagtgtt  19911700          <---------WOX13(1)        --------->ATHB12       <---------YAB1                             <---------LBD16  <---------WOX13(1)                         --------->YAB1 <---------ANAC46                 --------->ARR14(2) ---------MYB46(3)                <---------ARR14(2)   <---------MYB46(3) --------YAB1         ----------->GT1       <---------YAB1 -----MYB46(3)   <---------ARR14(2)        --------->AHL20(2)------->TEIL                           < ----RAV1(1) <---------TOE2(3)  --------->ANAC46<-----------GT1                <---------KAN4(2)    - -------->ATHB12 --------->ARR14(2)--------->GLK1(1)--------->LBD16     --------->ATHB12         <---   gttgattggatgattgacgaattcgggttaaaacccgatacccatttttataaccggatgttgaatcttctcgttgatgggaatagtctgaaactcgttg  19911800  Previous    Next  AGI:  At3g53690.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G14250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65178.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 19909766    to: 19911043    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g53700.1    Description:  MEE40 (maternal effect embryo arrest 40). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G64320.1); similar to hypothetical protein OsJ_011172 [Oryza sativa (japonica cultivar-group)] (GB:EAZ27689.1); similar to hypothetical protein OsI_012119 [Oryza sativa (indica cultivar-group)] (GB:EAY90886.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18032.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 19911258    to: 19913862    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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