Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ------>ZmHOX2a(2)      --------->ARR11(3)      <---------ARR14(2)     <---------ZAT14     --------->ZAT14 -------bZIP60(1) ------>ETT(2) ------>ANAC46 ------>ANAC58                -------->P -------ETT(2)              --------->MYB46(3) -------TGA2(1)     --------->ORA47(1) ------>ANAC58      ------>NtERF2 ------>TGA2(1)     <---------RAP2.6(3)     --------->KAN4(2)               <---------At4g35610 ------>bZIP60(1)  --------->DEAR3(1)      --------->HSFB2a(1)              --------->At4g35610 ----->HVH21       ----------->HVH21       <---------HSFB2a(1)     ----------->GT1   <---------AHL20(2) >GLK1(2)          <---------ETT(1)      <------ZmHOX2a(1)       <---------ANAC58   --------->AHL20(1) -ARR11(3)        --------->DEAR3(2)    --------->ANAC58         <---------ANAC46   <---------ARR11(3) >ARR14(2)       <---------At4g35610    --------->ANAC58         <---------ANAC58   <---------AHL20(1)   acgacactgatctggctcgagccgaccagaacaaccagagacaggacattcgattgagagaatgttgtcttgtaatttagctgctatatatttcgaaaca  19910600                                               --------->YAB1                                               <---------ICU4                                               --------->ATHB51                                ------                                              <---------ATHB12                               <-------                                              --------->ICU4                              ------>NtERF2                                    --------->MYB52(1)                                   --------->DEAR3(1)                                 <---------ANAC55(2)                                    --------->RAP2.3(1)                                 --------->ANAC55(2)                                    <------NtERF2                                 --------->ANAC58                                       --------->ATERF1(1)                                 --------->ANAC58                                       --------->DEAR4(2)                                 --------->ANAC46                                ---------->DOF2 <---                              --------->ARR14(2)                     <---------ARR11(3)<---------ATERF1(1)                              <---------ARR14(2) <---------TOE2(3)   --------->ARR11(3)<---------RAP2.3(1) <---------MYB46(3)     --------->MYB46(3)    <---------ATHB51      <---------CCA1(2) <---------DEAR3(1)   cagtcgttgcagtagaagtgagagcatccaccgatacgaaacgactcaattatggattttgaatcaacacatatctcacagtcgaaagtcgccgtctttg  19910700                                                                                       ------>ZmHOX2a(2)                                                                                      --------->CCA1(2)                                                                                      <------ZmHOX2a(2)                                  <---------ANAC46                                   <-----------ARR10                                <---------MYB46(3)       --------->YAB1              --------->AGP1                               <---------DEAR3(1)       <---------YAB1               <---------AGP1                               <---------AtMYB61      <---------bZIP60(1)            <---------ARR14(2)                               --------->ALFIN1       --------->bZIP60(1)            --------->ARR11(3)                             <------MYB83             --------->GLK1(1)         <------ZmHOX2a(2)                            <---------MYB46(3)     <---------YAB1              --------->ARR11(3)                            <---------AtMYB61   --------->GLK1(2)              <---------ARR11(3)                            --------->ALFIN1   <---------ARR14(2)            --------->ICU4 ----->HVH21               <---------WOX13(1)  --------->ARR14(2)          ---------->DOF2 ---DOF2----------->HVH21 <---------ARR14(2)   <---------GLK1(2)     <---------ICU4  <---------ARR11(3) ------TOE2(3)<----------DOF2<------MYB46(1)  <------ZmHOX2a(1)     <---------YAB1   --------->ARR14(2)   acgaagaagactgacccttttctctgtggattggtggtgcgaaacagaggattctgatatcatcgtcttcatcatcgtaaagatcaagatctatgtaaat  19910800                                                                    ----------->GT1                                                                    ------>ZmHOX2a(2)                 <---------TOE2(3)                                  --------->YAB1                 <-         <---------ANAC58                                          <------ZmHOX2a(2)          -------         <---------ANAC58                                       <---------YAB1   ------->GAMYB-------   --------->GLK1(2)                                          --------->YAB1     ====================  --------->ARR14(2)              <--------P         <---------HSFC1(2)         --------->ANAC46 ====  <---------GLK1(2)          <------ZmHOX2a(1)       --------->HSFC1(2)  --------->ICU4     <--------  <---------ARR14(2)   <---------ANAC46  --------->LBD16     <------ZmHOX2a(2)--------->MYB52(1) <---   tggagattctgacttgattacggttttgtgaggagggtagacccagagacgttgaagtttccgatcacgatcgtaattctcaacggaaatagcatcacgc  19910900            <-------TEIL            --------->ZAT14          <-------MYC3          <-------PIF4          ------->PIF4          ------->MYC4          <-------MYC4          <-------MYC2          <-------PIF5          ------->PIF5         <---------O2         --------->TGA1a         <---------TGA1a       <---------ALFIN1      --------->MYB46(3)                                     <---------DEAR3(1)    <---------ARR14(2)                                      --------->ATERF1(1)          ------->GAMYB    --------->ARR14(2)                                     <---------ATERF1(1)          --------->MYB46(3) --------->HSFB2a(2)                                       <-----------HVH21        <------ZmHOX2a(2) --------ANAC46                                            ------>NtERF2           --------->ARR11(3) -->ANAC58------->MYC2    --------->ALFIN1                --------->DEAR3(1)       <---------ARR11(3) -->ANAC58------->MYC3   <------ZmHOX2a(1)          --------->ATHB51         --------->LBD16       -- ==================MYC_MYB<---------ANAC46          <---------ICU4           <---------HSFB2a(2)   <- ==================bZIP_DOF                        --------->ICU4            --------->HSFB2a(2)  <-- -ALFIN1 --------->O2 <------ZmHOX2a(1)       --------->YAB1<------NtERF2  <---------LBD16       <--- -------DOF2<---------ZAT14 --------->ALFIN1--------->MYB52(1) <------NtERF2<---------LBD16<------ZmHOX2a(2)   tttgtggaaccacgtgcagagagaggaggagtggagaagatgaaacaatcggaattatcgccgtcgtcgtttacatctccgggaagatcaacgatcactg  19911000               <------NtERF2              ------>NtERF2             <---------ETT(2)             --------->bZIP60(1)            ---------->ID1          --------->ALFIN1          <-----------RAV1(1)     --------->MYB52(1)    ----------->HVH21                       <---------ANAC58    ------->GAMYB                      <------MYB83  --------->At4g35610                 --------->MYB59  <---------At4g35610       -------->HAHB4  <---------ANAC46 <---------DOF5.7(2)       --------->ICU4   <---------ANAC58 ------->DOF5.7(2)         <---------YAB1  *TSS               <---------TOE1(3)              <------- --------MYB52(1)        --------->YAB1<------MYB46(1)--------->YAB1    ------->TEIL    <-----------GT1 --------DOF2<---------bZIP60(1)      <---------TOE2(3)       <---------TOE2(3)     <---------DAG2<-- ------ANAC46--------->ETT(2)    <---------YAB1  ------------>CBF    <---------YAB1 <----------DOF2<-   cgttaactgactgtgtcgccatttcaaaaatgattctaattaggtttcgtccacaatcagaattagggtttatgaatcacttactactttttgctctttt  19911100                                                                                <---------LBD16     <                                                                           <------------CBF         <                                                                          <---------ICU4           <-                                                                          --------->YAB1       ------                                                                          <--------ATHB1       ------                                                                          -------->HAHB4      -------                                                                          --------->ATHB51  <--------                                                                         --------->ICU4     ---------                                                                         <---------YAB1 <---------MYB52(2)                                                                      <---------AHL20(2)--------->ANAC58      <-----------GT1                   <---------ANAC58             --------->AHL20(2) --------->ANAC58 ---DOF2 <----------DOF2         <----------DOF2        --------->TOE2(3)<---------AHL20(2) --------- -------AtLEC2                   <---------DAG2         --------->TOE1(3)<---------ATHB51   --------- -----------CBF      ---------->DOF2    <---------ANAC58<---------MYB59--------->YAB1<-------TEIL  <-   gcattgaatcactttccattttccaaagcgtctcactttttggcttactgctaaaaaacctaaatcgaatttttaataattgtccggttcacgaacgaac  19911200    <---------MYB52(1)   <-------GAMYB  <---------DEAR3(2)  <------MYB46(1)  <---------MYB46(3)  <------MYB83 <---------DEAR3(1) ---------MYB55(1) --------P --------MYB52(1)         ---------->DOF2 --->MYB52(1)           ------>ZmHOX2a(1) ->TEIL                --------->TOE2(3) -->MYB52(1)           --------->TOE1(3) -MYB52(2)           --------->ICU4               --------->YAB1 >ANAC58      <------------CBF           <---------ANAC58 >ANAC58    <---------AHL20(2)           <---------ANAC58     <---------HSFB2a(2) <----------DOF2 >MYB46(3)  --------->AHL20(2)        ---------->ID1         <---------LBD16     <---------ANAC58 ----------HVH21--------->YAB1      <-----------RAV1(1)   *TSS--------->HSFB2a(2)<---------ANAC58   cggtcggttagcaaaaaattgtaatccttaaacccattttgttgcttcactctcatcatcttctctggaaactgaaaactatggctttctcttcatgtct  19911300                                           <---------ICU4                                          <---------YAB1                                          <---------ATHB12                                 --------->TOE1(3)                                 --------->TOE2(3)                      ------>ZmHOX2a(1)          -- --------->GLK1(2)              --------->ZAT6                       ------>ZmHOX2a(1)  ------>ZmHOX2a(1)   caaattctatccattttctatctctcaagctgtaaccctaactcatcattccttctctctcaatctaactcctccttcttctaccatctccttcgcttct  19911400                                                                         <---------ALFIN1                                                                        <---------ZAT18                                                                        <------NtERF2                                                                        ------>NtERF2                                                                       --------->RRTF1(2)                                                                       --------->RAP2.3(2)                                                                       --------->RAP2.6(2)                                                                       --------->DEAR3(1)                                                                       --------->RRTF1(3)         --------->ZAT2                                               --------->RAP2.3(1)         --------->At4g35610                                          --------->ANAC46         <---------At4g35610                                          --------->ATERF1(1)      --------->ZAT2                 --------->HSFB2a(2)             --------->LBD16      <---------ZAT2             <---------GLK1(2)                   ------>NtERF2      --------->At4g35610      --------->ANAC58                <---------ICU4   <---------CCA1(2)      <---------At4g35610      --------->ANAC58  --------->LBD16    --------->ANAC46<----------DOF2 ---->ZmHOX2a(1)  ------>ZmHOX2a(1)  <---------HSFB2a(2)      <---------YAB1    ---------->ID1   cctcactcagcagctctctcctctaccgatgtcaagcttctcgactcactccgtagccagcctgatgattccgccgcacttcgtctctttaatctggcct  19911500  Previous    Next  AGI:  At3g53690.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G14250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65178.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 19909766    to: 19911043    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g53700.1    Description:  MEE40 (maternal effect embryo arrest 40). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G64320.1); similar to hypothetical protein OsJ_011172 [Oryza sativa (japonica cultivar-group)] (GB:EAZ27689.1); similar to hypothetical protein OsI_012119 [Oryza sativa (indica cultivar-group)] (GB:EAY90886.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18032.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 19911258    to: 19913862    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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