Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->LBD16                                                        <---------HSFB2a(2)                                                        --------->HSFB2a(2)                                                 ------>ZmHOX2a(2)                               ----                                                <------ZmHOX2a(2)                 --------->DAG2 <---                                               --------->ARR14(2)           --------->ALFIN1     <---        <-----------------AGL1                 <---------ARR14(2)        --------->DAG2          ----      --------->GLK1(2)                        <---------ARR11(3)  <---------------AGL15         <---     <---------GLK1(2)                    <---------ANAC46    <---------ARR11(3) ---------->DOF2 ---- ------->YAB1         --------->TOE2(3) <---------LBD16<---------LBD16 ---------->DOF2--------->MYB52(1) ----->GT1--------->LBD16    --------->ARR11(3)--------->ARR11(3)  --------------->AGL15        -----   ataataagattccgaaattcgaaaccctagttatcttcaatttgggggggatctatctccagaagataactaaaaaaggtgggaaaagtaacagaaaaat  19875300          --------->ALFIN1       --------->DAG2                 --------->LBD16      ---------->DOF2                ------->GAMYB  <---------AHL20(2)                 --------->RAP2.6(2)  --------->AHL20(2)                 --------->ANAC46 ----->ARR11(3)                    -------->P ------ARR11(3)                    <---------At5g28300                                              < ------AHL20(2)                 <---------MYB52(2)                                                --- ----->AHL20(2)              --------->AHL20(2)                --------->AHL20(2)      <---------ANAC46 ------AHL20(1)        <---------At4g35610       ----------->HVH21                     ----------->GT1 ----->AHL20(1)       ------->TEIL--------->MYB52(1)           <---------AHL20(2)      --------->YAB1 ---->AHL20(2)     <---------REM1(1)--------->MYB46(3)   ----------->GT1          --------->At4g35610   atattaaaaaaagtggaagtaatgtagctaataaactaaccgcaaatttctctcacacagagtaatttaaaacgttgaattagtcgctgtcgtaatttga  19875400                                                                         --------->AHL20(2)                                                                        --------->ARR11(3)             ------>ZmHOX2a(2)                                          <---------ARR11(3)            <------ZmHOX2a(2)                                           <---------AHL20(1)           --------->ARR14(2)                                           --------->AHL20(1)           <---------ARR14(2)                                     <------ZmHOX2a(1)     <---------GLK1(1)                                           --------->LBD16     --------->GLK1(1)                                         <-----------RAV1(2)   <------NtERF2                                               <---------LBD16  --------->LBD16                --------->ZAT18           <---------ARR11(3) --------->LBD16          <---------AHL20(2)               --------->ARR11(3) ---------LBD16          --------->AHL20(2)               --------->CCA1(1) --->ZmHOX2a(2)          --------->YAB1                   --------->RVE1(1)  *TSS    ---------->DOF2   tcgccggaattcagatcggagaaacaataaaaatgctcactgaattggaattgaagaaaaaaatctcaggagaaaatatttaacagcgaaagagactgaa  19875500                                                     <---------HSFB2a(2)                                                     --------->HSFB2a(2)                                                    <---------LBD16                            ------                                                  <---------ARR14(2)                        <--------                                                  --------->ARR14(2)   <----------DOF2     <---------AHL20(2)                      <------ZmHOX2a(1)   ----------->RAV1(1) <---------YAB1               --------->AHL20(2)                ----------->RAV1(2)      ----------->HVH21 --------->ARR11(3)          --------->ICU4               --------->GLK1(2)      <------ZmHOX2a(1)    <---------ARR11(3)         <----------DOF2   atgagagagagagagagaacctgaggaagagaacagcgaaggagcgacagaggctctggaagttcttaatgggcttttttagtcaggcctttattaaata  19875600                                                 <---------O2                                                 --------->TGA1a                                                 <---------TGA1a                                    <---------TOE2(3)             <---------AHL20(2)                            <-----------GT1      --------->O2<---------MYB52(1)                   --------->ICU4   <---------TOE1(3)      ----------->GT1         <---------ANAC46              --------->ANAC58      <---------ANAC46     <---------ZAT14           <---------ANAC58       ---------->DOF2     <---------YAB1        <---------ANAC46--------->AHL20(2)<---------ANAC58  --------->WRKY38(1) ----------->GT1 <------ZmHOX2a(1)<---------GLK1(1)    ------------>CBF --->AHL20(2) --------->ANAC58 <-----------RAV1(1) --------->ALFIN1        <<<<<<<<<<<<<<<<<LFY====== -AHL20(2)  --------->MYB52(1) <---------ZAT6    <---------bZIP60(2)    --------->YAB1         ------   tatgttgactaaagaaacgacatgatgttattactgttgaggataaaaacgacgtggagttcagttatttaatatcagaacaatggggtgttttctccaa  19875700                                                                          <---------MYB52(1)                                                                          --------->DOF5.7(2)                                                                      ------>NtERF2                                                                     --------->RAP2.6(2)                                                                     --------->RAP2.3(2)                                                                     --------->ANAC46                                                                     --------->DEAR3(1)                  <---------O2--------->WRKY12                      --------->ERF1             ------               <---------ARR14(2)                                   --------->RAP2.3(1)       <------NtERF2               ----------->HVH21         --------->YAB1             --------->MYB46(3)       ------>NtERF2   --------->AHL20(2)      <---------MYB46(3)--------->GLK1(2)   <---------GLK1(1)          --------- <----------DOF2  <---------TGA1a   ----------->GT1        --------->AtLEC2                 --------- ===========================bZIP_DOF--------->ANAC58<---------At4g35610--------->RAP2.3(1)  --------- ===========================bZIP_DOF--------->ANAC58--------->At4g35610<------NtERF2    <-----------HVH21 ---->DOF2    <------ZmHOX2a(1)    *TSS>>>>>>>>>>GT-3b--------->RAP2.6(2)<-------GAMYB --------->ANAC46   agtcttttaatatggaggagacgggagagtcgttgaacaagaaaaataatctgaagcagccatggagatagccgccgttagcactgtctccgtcgcgcca  19875800                                            ------->TEIL                                            <---------ARR14(2)                                            <-----------ARR10                                            --------->ARR14(2)                                            <---------ARR11(1)                                            <---------ARR11(3)                                           <---------ARR14(1)                                           <---------CCA1(2)                                         <---------ANAC55(1)                                         --------->ANAC55(2)                                         <---------ANAC55(2)                                         <---------ANAC58                                        ------>ZmHOX2a(2)                                        --------------->AtSPL3                                       <------ZmHOX2a(2)                                      <---------ARR14(2)                                 --------->TOE1(2)     <----------CDC5           --------->GLK1(2)       <---------ANAC58    --------->LBD16          ==================HOX2a_HOX2a        <----------DOF2   <---------ANAC46          =================HOX2a_HOX2a   <------MYB83  <---------LBD16            <------ZmHOX2a(1)      <----------DOF2                 <----------DOF2 ----->RAV1(1)             --------->LBD16--------->LBD16   <------MYB46(1)        <---------ANAC58 >ANAC46           <---------ANAC58   --------->ARR14(2)   <---------AtMYB61       <---------ANAC58 >ANAC58           <---------ANAC58  <------ZmHOX2a(1) <---------ANAC58 ---------->DOF2    --------->ZAT18 >ANAC58  --------->ALFIN1<---------LBD16<---------ANAC58<---------MYB52(1)   <---------KAN4(1)   caatcgcgcagagtgtcgaatgcgttctccaggaatctaggatccgtatcttctctttcgtttggtttctttgagaaagaatattgctttaagagcccta  19875900                                <-----------HVH21                                ------>NtERF2                               --------->bZIP60(1)                               <---------bZIP60(1)                               --------->RAP2.3(3)                               --------->RAP2.6(2)                             <---------ATERF1(1)                             ------>NtERF2                 --------->HSFB2a(1)                 --------->At4g35610    --------------------->WRI1                 --------->ZAT2--------->DEAR3(1)                 <---------HSFB2a(1)  --------->ZAT2                 --------->HSFC1(2)   <---------At4g35610                 <---------HSFC1(2)   <---------ZAT2                 <---------At4g35610<-----------RAV1(2)              <---------ZAT2--------->ANAC46              --------->At4g35610<------NtERF2                    <---------HSFC1(1)   --------->ARR11(3)              <---------At4g35610----------->HVH21                --------->HSFB2a(2)  <---------ARR11(3)           <---------ZAT14  --------->ANAC58                      <---------HSFB2a(2) --------->GLK1(1)           --------->At4g35610<------NtERF2            ------>NtERF2               --------->LBD16           <---------At4g35610--------->RAP2.3(1)      --------->LBD16           <---------LBD16  <---------ANAC58          <---------DEAR3(1)        <---------DEAR3(1)        --------->MYB52(1)  <---------ANAC46          --------->ANAC58         <---------LBD16      ---------->DOF2      <-----  <---------ANAC58    <---------AtLEC2--------->At4g35610         --------->HSFC1(1)  <---------GLK1(1)   gccttcgtgtgtctgcagcagcttccatggacgccgtcacagctgagaaattttctccggcgagttttctagacaaaaaagaaaccggagttcttcactt  19876000                                                                             --------->ANAC58                                                                 <------MYB46(1)                                                                 <------MYB83--------->ANAC46                                                          <---------------AGL15                                                          --------------->AGL15                                                         <-----------------AGL3                                                         <-----------------AGL2                                                         ----------------->AGL2                        <---------bZIP60(1)              <-----------------AGL1                        --------->bZIP60(1)       <---------MYB52(1)     <-----------GT1                     <---------ATHB12         <---------At5g28300----------->GT1                 <------NtERF2        <----------DOF2    <-----------------AG--------->ANAC58 -----DOF2    <------NtERF2     --------->MYB59  <-------GAMYB  --------->MYB59      ------->TEIL   tgtgaaataccatggcctcggcaatgacttcattttggtacttttgttcaccgttgaattctcaatttggtaatttaacccgaaatgtatcgaattctta  19876100                                                                                                 <---                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                            ---------                                                                                        <------NtERF2                                                                                        --------->ATERF1(1)                                                                                        --------->RAP2.3(1)                                                                                       <---------ERF1                                                                                       <---------ATERF1(1)                                                                                       <---------ORA47(2)                                                                                       <---------RAP2.3(1)                                                                                       ------>NtERF2                                                                                       <---------DEAR4(2)                                                                 --------->TOE2(3)    <---------RAP2.3(2)                                                                 --------->TOE2(2)    <---------RAP2.3(3)                                              --------->MYB52(1) --------->TOE1(2)    --------->ATERF1(2)                    <----------DOF2       <---------ETT(2)    <---------ARR14(2)      <---------ATERF1(2)               ---------->ID1          <------MYB46(1)        --------->ARR14(2)      <---------DEAR3(1)              <-----------GT1          <------MYB83       --------->At4g35610     <-----------RAV1(2)   caaatgttttcaaatttttcgtctttggaattggattttgtaggtcgataacagagactcatcggaacctaagattactcaagaacaggcggcgaagctg  19876200  Previous    Next  AGI:  At3g53570.1    Description:  AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); kinase. Identical to Serine/threonine-protein kinase AFC1 (AFC1) [Arabidopsis Thaliana] (GB:P51566;GB:Q39184); similar to AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G24740.1); similar to putative protein kinase (AME2/AFC1) [Oryza sativa (japonica cultivar-group)] (GB:BAD81689.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73108.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18096.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR00071 Range:  from: 19872278    to: 19875477    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g53580.1    Description:  diaminopimelate epimerase family protein. Identical to Diaminopimelate epimerase, chloroplast precursor (DAPF) [Arabidopsis Thaliana] (GB:Q9LFG2); similar to unnamed protein product [Vitis vinifera] (GB:CAO18103.1); contains InterPro domain Diaminopimelate epimerase; (InterPro:IPR001653) Range:  from: 19875735    to: 19878112    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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