Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  --------->ANAC58                                                                                --------->ANAC58                                                                                --------->ANAC46 --------->HVH21                                                   --------->STY1(2) -->ZmHOX2a(1)    --------->At4g35610                 <------ZmHOX2a(2)       <-----------GT1 ------HSFB2a(2)==============================HOX2a_HOX2a          <---------STY1(2) ----->LBD16   ===============================HOX2a_HOX2a          <---------ZAT2 ----->HSFB2a(2)------>ZmHOX2a(2)      ------>ZmHOX2a(1)           --------->ZAT2  --------->CCA1(2) -----LBD16    <------ZmHOX2a(2)       ======================HOX2a_HOX2a      --------->YAB1 ---->TOE1(2) <---------ARR14(2)       ===============================HOX2a_HOX2a --------->ARR14(2)- ----->RAV1(2)--------->ARR14(2)       <---------At4g35610     <------ZmHOX2a(2)<---------YAB1   <--- ----ANAC46  ------->GAMYB --------->GLK1(1)         --------->ARR11(3)  <---------DAG2--------->ANAC46 --ARR14(2) --------->MYB46(3)   <---------ICU4      <---------ARR11(3)  <----------DOF2     <-------   tgggacgcttatcaacgatccgatgagggaattcaacattcctctgagtttctaagatcatcgcgatcgagctagctttatcacgatacacactgctttg  19875100                           <---------ZAT2                           <---------At4g35610                                                     --    <------ZmHOX2a(1)      --------->ZAT2                                          ------->TEIL------  <---------TOE2(3)        --------->At4g35610                                     --------->GLK1(2) --------->DOF2     <---------ARR14(2)             <---------YAB1                  <---------ARR11(1) ------AtLEC2       --------->ARR14(2)         <---------GLK1(2)                  <---------ARR14(1) ---DOF2----------->GT1 --------->LBD16 --------->GLK1(1)            <---------YAB1<-----------ARR10   cataaaggattagaaaaatgcaaatccagagctgaaattcagaaacccagattatgaacagcgagagaattgcgattgaatttcgaatctaattagaggg  19875200                                                         --------->LBD16                                                        --------->HSFB2a(2)                                                        <---------HSFB2a(2)                                                 ------>ZmHOX2a(2)                               <---                                                <------ZmHOX2a(2)                 --------->DAG2 <---                                               --------->ARR11(3)           --------->ALFIN1     ----        <-----------------AGL1                 <---------ARR11(3)        --------->DAG2          <---      --------->GLK1(2)                        --------->ARR14(2)  --------------->AGL15         ----     <---------GLK1(2)                    <---------ANAC46    <---------ARR11(3) ---------->DOF2 ---- ------->YAB1         --------->TOE2(3) <---------LBD16<---------LBD16 ---------->DOF2--------->MYB52(1) ----->GT1--------->LBD16    --------->ARR11(3)<---------ARR14(2)  <---------------AGL15        -----   ataataagattccgaaattcgaaaccctagttatcttcaatttgggggggatctatctccagaagataactaaaaaaggtgggaaaagtaacagaaaaat  19875300          --------->ALFIN1       --------->DAG2                 --------->LBD16      ---------->DOF2                --------->RAP2.6(2)  --------->AHL20(2)                 --------->ANAC46  <---------AHL20(2)                 ------->GAMYB ------ARR11(3)                    <---------At5g28300 ------AHL20(1)                    -------->P                                                       < ----->ARR11(3)                 <---------MYB52(2)                                                --- ------AHL20(2)              --------->AHL20(2)                --------->AHL20(2)      --------->YAB1 ----->AHL20(2)        <---------At4g35610       ----------->HVH21                     ----------->GT1 ----->AHL20(1)       ------->TEIL--------->MYB52(1)           <---------AHL20(2)      <---------ANAC46 ---->AHL20(2)     <---------REM1(1)--------->MYB46(3)   ----------->GT1          --------->At4g35610   atattaaaaaaagtggaagtaatgtagctaataaactaaccgcaaatttctctcacacagagtaatttaaaacgttgaattagtcgctgtcgtaatttga  19875400                                                                         --------->AHL20(2)                                                                        --------->ARR11(3)             ------>ZmHOX2a(2)                                          --------->AHL20(1)            <------ZmHOX2a(2)                                           <---------AHL20(1)           <---------ARR14(2)                                           <---------ARR11(3)           --------->ARR14(2)                                     <------ZmHOX2a(1)     <---------GLK1(1)                                           --------->LBD16     --------->GLK1(1)                                         <-----------RAV1(2)   <------NtERF2                                               <---------LBD16  --------->LBD16                --------->ZAT18           <---------ARR11(3) --------->LBD16          <---------AHL20(2)               --------->ARR11(3) ---------LBD16          --------->AHL20(2)               --------->CCA1(1) --->ZmHOX2a(2)          --------->YAB1                   --------->RVE1(1)  *TSS    ---------->DOF2   tcgccggaattcagatcggagaaacaataaaaatgctcactgaattggaattgaagaaaaaaatctcaggagaaaatatttaacagcgaaagagactgaa  19875500                                                     <---------HSFB2a(2)                                                     --------->HSFB2a(2)                                                    <---------LBD16                            ------                                                  --------->ARR14(2)                        <--------                                                  <---------ARR14(2)   <----------DOF2     --------->AHL20(2)                      <------ZmHOX2a(1)   ----------->RAV1(1) <---------YAB1               <---------AHL20(2)                ----------->RAV1(2)      ----------->HVH21 <---------ARR11(3)          --------->ICU4               --------->GLK1(2)      <------ZmHOX2a(1)    --------->ARR11(3)         <----------DOF2   atgagagagagagagagaacctgaggaagagaacagcgaaggagcgacagaggctctggaagttcttaatgggcttttttagtcaggcctttattaaata  19875600                                                 <---------TGA1a                                                 <---------O2                                                 <---------ANAC46                                    <---------ANAC46              <---------AHL20(2)                            <-----------GT1      <---------bZIP60(2)                   --------->ICU4   <---------TOE2(3)      ----------->GT1         <---------ANAC46              --------->ANAC58      <---------TOE1(3)    <---------ZAT14    ------------>CBF       ---------->DOF2     <---------YAB1        --------->TGA1a --------->AHL20(2)<---------ANAC58  --------->WRKY38(1) ----------->GT1 <------ZmHOX2a(1)<---------GLK1(1)   <<<<<<<<<<<<<<<<<LFY------ --->AHL20(2) --------->ANAC58 <-----------RAV1(1) --------->ALFIN1     --------->YAB1         ====== -AHL20(2)  --------->MYB52(1) <---------ZAT6    --------->O2<---------MYB52(1)    <---------ANAC58   tatgttgactaaagaaacgacatgatgttattactgttgaggataaaaacgacgtggagttcagttatttaatatcagaacaatggggtgttttctccaa  19875700                                                                          <---------MYB52(1)                                                                          --------->DOF5.7(2)                                                                      ------>NtERF2                                                                     --------->RAP2.3(2)                                                                     --------->ANAC46                                                                     --------->DEAR3(1)                                                                     --------->RAP2.6(2)                  <---------O2--------->WRKY12                      --------->RAP2.3(1)        ------               <---------ARR14(2)                                   --------->MYB46(3)        <------NtERF2               ----------->HVH21         --------->YAB1             --------->ERF1           ------>NtERF2   --------->AHL20(2)      <---------MYB46(3)--------->GLK1(2)   <---------GLK1(1)          --------- ===========================bZIP_DOF----------->GT1        --------->AtLEC2                 --------- <----------DOF2  <---------TGA1a   --------->ANAC58<---------At4g35610<------NtERF2    <-----------HVH21 ---->DOF2    <------ZmHOX2a(1)    *TSS>>>>>>>>>>GT-3b--------->RAP2.6(2)<-------GAMYB --------->ANAC46 ===========================bZIP_DOF--------->ANAC58--------->At4g35610--------->RAP2.3(1)  ---------   agtcttttaatatggaggagacgggagagtcgttgaacaagaaaaataatctgaagcagccatggagatagccgccgttagcactgtctccgtcgcgcca  19875800                                            <---------ARR11(1)                                            --------->ARR14(2)                                            <-----------ARR10                                            <---------ARR14(2)                                            <---------ARR11(3)                                            ------->TEIL                                           <---------CCA1(2)                                           <---------ARR14(1)                                         <---------ANAC58                                         <---------ANAC55(2)                                         <---------ANAC58                                         <---------ANAC55(1)                                        --------------->AtSPL3                                        ------>ZmHOX2a(2)                                       <------ZmHOX2a(2)                                      <---------ARR14(2)                                 --------->TOE1(2)     <----------CDC5           --------->GLK1(2)       <---------ANAC58    --------->LBD16          <------ZmHOX2a(1)      <----------DOF2   <---------ANAC46          =================HOX2a_HOX2a         <----------DOF2  <---------LBD16            ==================HOX2a_HOX2a  <------MYB83            <----------DOF2 ----->RAV1(1)             --------->LBD16--------->LBD16  <---------AtMYB61       <---------ANAC58 >ANAC58           <---------ANAC58   --------->ARR14(2) <---------MYB52(1)        <---------ANAC58 >ANAC58           <---------ANAC58  <------ZmHOX2a(1) <---------ANAC58 ---------->DOF2    --------->ZAT18 >ANAC46  --------->ALFIN1<---------LBD16--------->ANAC55(2)<------MYB46(1)   <---------KAN4(1)   caatcgcgcagagtgtcgaatgcgttctccaggaatctaggatccgtatcttctctttcgtttggtttctttgagaaagaatattgctttaagagcccta  19875900                                <-----------HVH21                                ------>NtERF2                               <---------bZIP60(1)                               --------->bZIP60(1)                               --------->RAP2.6(2)                               --------->RAP2.3(3)                             ------>NtERF2                             <---------ATERF1(1)                 --------->HSFC1(2)                 --------->At4g35610    --------------------->WRI1                 <---------HSFC1(2)   <---------At4g35610                 --------->HSFB2a(1)  --------->At4g35610                 <---------At4g35610  --------->ZAT2                 --------->ZAT2--------->DEAR3(1)                 <---------HSFB2a(1)<-----------RAV1(2)              <---------ZAT2--------->ANAC58              --------->At4g35610<------NtERF2                    <---------HSFB2a(2)  <---------ARR11(3)              <---------At4g35610----------->HVH21                --------->HSFB2a(2)  --------->ARR11(3)           <---------ZAT14  --------->ANAC46                      --------->HSFC1(1)  --------->GLK1(1)           --------->At4g35610<------NtERF2                       <---------HSFC1(1)  <---------GLK1(1)           <---------At4g35610--------->RAP2.3(1)      ------>NtERF2               --------->LBD16  <---------ANAC58          --------->ANAC58           --------->LBD16           <---------LBD16  <---------ANAC58          <---------DEAR3(1)        <---------DEAR3(1)        --------->MYB52(1)  <---------ANAC46    <---------AtLEC2<---------ZAT2 <---------LBD16      ---------->DOF2      <-----   gccttcgtgtgtctgcagcagcttccatggacgccgtcacagctgagaaattttctccggcgagttttctagacaaaaaagaaaccggagttcttcactt  19876000  Previous    Next  AGI:  At3g53570.1    Description:  AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); kinase. Identical to Serine/threonine-protein kinase AFC1 (AFC1) [Arabidopsis Thaliana] (GB:P51566;GB:Q39184); similar to AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G24740.1); similar to putative protein kinase (AME2/AFC1) [Oryza sativa (japonica cultivar-group)] (GB:BAD81689.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73108.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18096.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR00071 Range:  from: 19872278    to: 19875477    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g53580.1    Description:  diaminopimelate epimerase family protein. Identical to Diaminopimelate epimerase, chloroplast precursor (DAPF) [Arabidopsis Thaliana] (GB:Q9LFG2); similar to unnamed protein product [Vitis vinifera] (GB:CAO18103.1); contains InterPro domain Diaminopimelate epimerase; (InterPro:IPR001653) Range:  from: 19875735    to: 19878112    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version