Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 ------>ZmHOX2a(2)                               <---------ICU4                         --------->CCA1(2)                     --------->HSFB2a(2)                 <----------DOF2<----------DOF2              <---------DDF1               --------->At4g35610            <---------ATHB12               <---------At4g35610          --------->WOX13(1)          ----------->GT1           <--          <---------HSFB2a(2)--------->ARR11(3)             --------->ETT(2)                      ---          --------->HSFB2a(2)<---------ARR11(3)             <---------ETT(2)                 --------   cttctactgcttctgtaagctttcgagatttgatctttacctccatcaatgaacgaagagcgtcgacatcagaagggtgagtaatcaaatgctcatcaag  19871600                                                        <------NtERF2                                                     <------NtERF2                                                     --------->ATERF1(1)                                                    <---------ATERF1(1)                                                    <---------DEAR4(2)                                                   --------->ALFIN1                                                 <---------ATERF1(1)                                                <---------ANAC46                                                <---------DEAR3(1)                                               <------NtERF2                                               <---------LBD16                                               --------->ATERF1(1)                                              ------>NtERF2                                              <---------RAP2.3(1)                                              <---------RRTF1(1)                                              <---------ERF1                                             <---------TGA1a                                             ===================================MYC_MYB                                             <---------RAP2.3(3)                                             <---------DEAR3(1)                                             <---------ATERF1(2)                                             --------->ATERF1(2)             <------NtERF2                                            --------->RAP2.6(3)             --------->LBD16                                           --------->MYB52(1)               ------>NtERF2                                          ------->GAMYB------>NtERF2        <---------ATERF1(1)                                          =============MYC_MYB             <---------DEAR3(1)                                          ----------->HVH21                --------->DEAR3(1)                                         <---------MYB52(2)                --------->ATERF1(2) <-----                                         --------->MYB46(3)                <---------ATERF1(2)-------                                   ====================bZIP_DOF           --------->ATERF1(1) -------                                   <----------DOF2 <---------DEAR3(1)     <---------LBD16    --------                                  <---------ANAC58--------->ATERF1(1)   ------->GAMYB        <-------                                  <---------ANAC58<------NtERF2        --------->MYB46(3)    --------                              <----------DOF2<---------RAP2.3(2)<---------At4g35610          <------- -------ZAT18        <---------DOF5.7(2)--------->At4g35610     <---------ZAT2              <-------- ------>ZAT18        --------->MYB52(1) <---------At4g35610     --------->ZAT2             ---------- -->DOF2  <<<<<<<<<TBF1       =========================bZIP_DOF --------->At4g35610       <----------   cgctctctcttcttcttccaaggtaacgttttctttgctttcaactgacggcggaggcgcgatgggagctgcaatcgccggcgatttgagatggagattc  19871700                     <-------GAMYB                    --------->MYB111(2)                    <---------MYB46(3)                    --------->MYB55(2)                   <---------MYB55(1)                   <--------P                  <-------GAMYB                 <---------MYB46(3)                 --------->MYB55(2)                 <---------DEAR3(2)               ------>NtERF2               <------NtERF2              ------>NtERF2              <---------ATERF1(1)              ------------>AtMYB77             <------NtERF2 ---------->DOF2<---------DEAR3(1) --TEIL <---------ARR14(2) -->ARR14(1) <---------DEAR3(1)         <---------ARR14(2)    <---------ZAT18 -->CCA1(2)  --------->ATERF1(1)        --------->ARR14(2)    --------->ZAT18 ->ARR11(1) ------>NtERF2           <-------MYC2           --------->ALFIN1 --GLK1(2)  <---------LBD16         ------->MYC3           <---------ANAC46 ->ARR14(2) --------->LBD16         <-------MYC3        --------->DAG2 --ARR14(2) --------->At4g35610     ------->MYC2      ---------->DOF2 -GLK1(1)  --------->DEAR3(1)     ------->TEIL     --------->ANAC58            ----------->HVH21 ->ARR10--------->ARR14(2)       <---------ANAC58  --------->ANAC58       --------->ALFIN1     >>>>>> -----------WRI1<---------ANAC46 <---------ANAC58--------->CCA1(2)<----------DOF2              >>>>>>   gccaaaagcagagccgcggcggttgttagagtgatgcatgtggatttgaagagacggaaaggtgtggactttgggagaggggtgatagagttttgaaatt  19871800                        --------->ARR14(2)                 ---------->DOF2               <---------WOX13(1)       ------->TEIL     <---------ARR14(2)            <---------ARR14(2)   <---------------------WRI1                         --------->ARR14(2)  <------ZmHOX2a(1) <---------At4g35610  <---------MYB46(3) >>>SARD1   <---------AHL20(2)  --------->At4g35610  <------ZmHOX2a(1)      --------->ICU4 >>>CBP60g<----------DOF2       --------->CCA1(2)  <---------TOE2(3)  <---------LBD16     --------->ALFIN1   tggaggacgaagctttaattgaagcggatttgagagatgaaattggttgaattgaggatttgaagaggtttttggggaatgttgaagaagaggtgtgagt  19871900                            <---------REM1(1)                          --------->At4g35610                          <---------At4g35610            --------->LBD16                         ------->TEIL                   <---------ANAC46                 <------MYB83                           <---------ANAC55(2)                 <------MYB46(1) <---------ANAC58 --------->ICU4                <---------MYB46(3)    <---------LBD16   --------->ANAC55(2)               <---------ANAC58  <---------ANAC58 <---------YAB1               <---------ANAC58 --------->At4g35610--------->ATHB12               <---------ANAC46 <---------At4g35610<---------ICU4    >>>>>>>>>GATA-1        ---------     ----------->GT1  <---------REM1(1) --------->LBD16<---------LBD16             ----------->GT1    --------->DAG2    <---------bZIP60(2)      ------------>ATHB5  ----------->GT1--------->DAG2  ---------->DOF2<---------At4g35610  --------->LBD16<---------WOX13(1)          ---------->DOF2   gaaggaaaggtgaaatggctggtgatgtagctgtagcttccccagagactccatgattgcggaatgagatagataaaccctagaaaagtaaaaaccctga  19872000                                                              ------>ZmHOX2a(1)                                                     --------->ARR14(2)                                                     <---------ARR14(2)                                                     --------->KAN4(2)              =================                                                    --------->KAN4(1)               <----------DOF2                                                    <----------TaMYB80        ------>NtERF2                                                    <---------KAN4(1)        --------->ETT(2)                                                    <---------HSFB2a(1)  <-------TEIL                         >>>>>>>>>TBF1              --------->HSFB2a(1) --------->ARR14(1)               <------MYB46(1)                     ---------->TaMYB80   --------->CCA1(2)               <------MYB83                        <---------KAN4(2)   --------->ARR11(1)         *TSS--------->CCA1(2)                     <---------ARR14(2)  <---------ARR14(2)       -----      ---------->DOF2 >>>>>>>>>TBF1                --------->ARR14(2)  --------->ARR14(2)    <------- -->RAV1(2)--------->CCA1(2)    <---------REM1(1)--------->LBD16   <---------At4g35610      ---------   gctagtagtaaagagataggtgaagaagaagaagatgaagcctttcgattccgaatattctctcctcgctgcagatacgacgacagcgttttggtcattg  19872100                 <---------ANAC58                 <---------ANAC46                ------>NtERF2            --------->ANAC46       --------->ANAC46       --------->At4g35610       --------->TGA1a                                                             --------->AHL20(2)       ======================================bZIP_DOF                 <---------ZAT6       <---------At4g35610                            <---------TOE2(3)  ---------->DOF2     <---------ALFIN1  <-----------GT1               <-----------GT1  <---------ANAC46    <------NtERF2<---------ANAC58               ----------->GT1       ----------->GT1 ================bZIP_DOF         ---------->DOF2   <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---->ATHB12--------->ANAC58------>MYB83    <---------AHL20(2)      <---------ANAC46 --------->YAB1 -----CBF   --------->ANAC58------>MYB46(1)<---------ATHB12 <-----------GT1----------->GT1 >ATHB12 ----------->HVH21<---------MYB59  --------->AHL20(2)  <----------DOF2   <----------DOF2<----   atgggcctcacctcacgctgcgttttgacctatccaaaaaacccaataaatggtttaacatttcactttgtggtgtaaagtaacttttaataactcttac  19872200                                      --------->ZAT18                                      --------->ZAT14                                 ---------->DOF2                              --------->ETT(1)                          <---------AtMYB61                           --------->ICU4                        <---------MYB46(3)                            --------->AHL20(2)                     --------->MYB55(2)                          ----------->GT1                     <---------MYB46(3)                  --------->MYB52(1)--------->MYB59                    --------->ALFIN1  <---------ZAT18    ----------->RAV1(1)                      <-- -----YAB1     ----------->RAV1(1)--------->DAG2   --------->AtMYB61  <---------AHL20(2)      <------   aatagccatggagggagcaacagtggttgtggtcggaaagtgaacacaaaaaaccaaaacaacagataagaaaaaattaggcacaaacctttctctcttt  19872300                                <---------AHL20(2)               <-------TEIL                                <---------AHL20(1)              --------->CCA1(2)              <-----                             --------->YAB1                    <---------ARR14(2)           ---------                           --------->AHL20(2)                  --------->ARR14(2)          --------->YAB1                        --------->AHL20(2)                    <------ZmHOX2a(1)<---------At4g35610                    --------->YAB1    <----------ID1<------ZmHOX2a(1)          --------->At4g35610 --                 --------->YAB1 --------->AHL20(2) --------->ANAC58     --------->ARR14(2) <---------ICU4 --------DOF2   <---------YAB1  --------->AHL20(1) --------->ANAC46    <---------GLK1(2)  <---------ATHB12 ----DOF2     --------->YAB1<---------AHL20(2)     --------->ANAC58 --------->ANAC46------->TEIL   <-   ctttcatttctatacatgataatcatatatataataaaatgctacaaaaacacaggaaactgaaggatacacagaaactgcagatgtatccaaacattat  19872400            <------------------------ANAC81<---------AHL20(2)           <------MYB83  <---------LBD16       <----------DOF2                    --------->YAB1                <------MYB46(1) --------->LBD16 ----ARR11(3) <----------DOF2      <-------GAMYB                       <---------AtMYB61------>NtERF2 >TOE2(3)  <-----------GT1       <---------AtMYB61                     --------->ALFIN1--------->LBD16 ------->At4g35610            <----------DOF2                 <-------GAMYB--------->ZAT14 <--------- --------At4g35610 <----------DOF2<---------MYB46(3)     --------->ALFIN1  --------->ARR14(2)   ctgctgtttcttttttcttttcttttttagttcttttggttgtataaaaatggatgagggtttgggttgaagggtggtatactctgttcccggcttcttg  19872500  Previous    Next  AGI:  At3g53560.1    Description:  chloroplast lumen common family protein. similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT2G37400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18093.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 19870605    to: 19872009    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g53570.1    Description:  AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); kinase. Identical to Serine/threonine-protein kinase AFC1 (AFC1) [Arabidopsis Thaliana] (GB:P51566;GB:Q39184); similar to AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G24740.1); similar to putative protein kinase (AME2/AFC1) [Oryza sativa (japonica cultivar-group)] (GB:BAD81689.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73108.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18096.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR00071 Range:  from: 19872278    to: 19875477    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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