Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <---------ZAT2                 ------->GAMYB                         <---------At4g35610                      -----           --------->TOE1(3)                  <---------At4g35610      --------->TOE2(3)        <----   <-----------GT1                            --------->ZAT2           --------->TOE1(3)    ---------  <---------AHL20(2)     <---------ICU4       --------->At4g35610     ----------->GT1     ------>MYB83 -----MYB59--------->TOE2(3)             ---------->DOF2    <---------ZAT18              ----------->RAV1(1) ---->TOE1(3)    --------->AtMYB61 --------->ZAT14     --------->At4g35610 ---------->DOF2------>MYB46(1) ---->TOE2(3)   --------->MYB46(3) <---------ZAT18     --------->ZAT2<---------TOE2(3)   ============   taaatttatcttacctcaaccatctcaacatttccagcgctctcaaagagctgagcaagctgagcgctatcaacgttaaaagaaaggttaccaacaaaga  19832100                                                     --------->At4g35610                                    <------NtERF2    <------NtERF2         <------ZmHOX2a(1)         --------->At4g35610 <---------ZAT18                      <-------TEIL        --------->At4g35610   <-----------RAV1(2) <---------MYB52(1)                      --------->ARR14(2)      <-----------RAV1(2)--------->ANAC46        <-----------TGA1                 --------->GLK1(2)    <-----------HVH21  --------->ANAC58          <-----------HVH21                <---------ARR14(2)  <---------TOE1(3)    --------->ANAC58    <-----------HVH21                      --------->ARR14(2)  <---------TOE2(3) --------->ARR14(2)     <-----------TGA1                 --------->TOE2(3) ---->ARR11(3)      <---------ARR14(2)    --------->YAB1         --------->At4g35610  --------->LBD16 -----ARR11(3)   <------ZmHOX2a(1)<---------DEAR3(1) <---------At4g35610   --------->ANAC46--------->CCA1(2) ->DOF2 <---------At4g35610 <---------ALFIN1    --------->DEAR3(1)       <---------ALFIN1 --------->ARR11(3) =================RAV<-----------GT1<----------CDC5<---------WRKY12    ------>ZmHOX2a(1)  <---------ARR14(2)   gcttaaggtcaggagagaaggagttacgctccacaggcgctgaatcgtcaccgtcagcgaacatatcatcttcctccacctcaaaatccgaagatacagc  19832200                               <------NtERF2                               --------->ATERF1(1)                   <---------MYB46(3)                  <---------ANAC46                <xxxxxxxxxxxxxxxxsmallRNA(s)               ----------->HVH21             --------->ANAC46 --------->LBD16                                   --------->ETT(1)             --------->ANAC58 <---------MYB46(3)                                <---------DEAR3(1)             --------->ANAC58 ------>NtERF2                                  <---------MYB46(3)           ---------->DOF2   --------->ALFIN1                               <---------AtMYB61        --------->ANAC58     <---------ANAC46          <------ZmHOX2a(1)    --------->ALFIN1        --------->ANAC46     <---------DEAR3(1)     <------NtERF2--------->CCA1(2)        --------->ANAC58    <------NtERF2         <---------DEAR3(1)     --------->ALFIN1       <---------TOE2(3)    <---------LBD16       --------->ALFIN1   --------->CCA1(2)<---------ZAT14      --------->MYB52(1)  <---------DEAR3(1)   <---------RAP2.3(3)  <----------ID1<------NtERF2  <---   aacgtttctaacgaaacgcgacgggtactcggcgggggatgagcatttgagggcggaggaagcgaagatagagacgaggtggtcggagtgaagtttgaag  19832300                                  <---------HSFB2a(2)                      --------->ANAC58  --------->ANAC58     <------ZmHOX2a(1)                 <-----         ----------->GT1       --------->ARR14(2)           <---------YAB1                    <------       <------ZmHOX2a(1)       <---------ARR14(2)<------ZmHOX2a(1)---------->DOF2      --------->At4g35610 ---ZmHOX2a(1)        --------->ANAC58  --------->ANAC58   <---------TOE2(3)        --------->At4g35610   gagagggaaggaggtaagacggagacggaagcgggtctggagacgcagagaggaagggatttaggattgaaagcagagagggaagaagcagaggcagaca  19832400                                                   <---------MYB46(3)                                                  --------->ALFIN1        --------->ARR14(2)                                                  <---------AtMYB61       <---------ARR14(2)                                             <---------ZAT2           <---------TOE2(3)                                             --------->ZAT2           <---------TOE1(3)                                            --------->GLK1(2)  --------->DAG2                                        --------->HSFB2a(2)    <---------TOE1(3)  ---------->DOF2                       <---------HSFB2a(2)  --------->CCA1(2) ----O2                              <----------DOF2       --------->CCA1(2) ---ARR14(2)   --------->GLK1(2)---------->DOF2--------->ALFIN1<---------TOE2(3)   *TSS   tggctaaagcttgagagaattttgctctcgaggctaaagctttgagaagctggtggtgaagagataaggtttaagggttctgcgagataacaagtccagt  19832500                                                            <----------DOF2                  --------->AHL20(2)     <----------DOF2 <---------ARR11(3)        <------------CBF              <-----------GT1    --------->GLK1(2)        <---------ALFIN1       --------->ATHB12           <---------MYB52(1)     --------->ARR11(3) --------->ARR11(3)       <---------AHL20(2)      ---------->ID1           --------->RVE1(1)   <---------ARR11(3)      <---------YAB1        <----------DOF2          --------->YAB1        --------->CCA1(1)       <-     <-----------TBP        <---------DAG2          --------->AHL20(2)     --------->RVE1(1)<--------   ttttgatatttattggcaaaaaaaatggaacttttcgttttttctttgcaaaaaataaaaatctttatccacttgaaatatctcccacttggattttttt  19832600          --------->GLK1(2)    ------>MYB46(1)             <------MYB83                                       <---------YAB1    ------>MYB83                <------MYB46(1)                                   ------>ZmHOX2a(2)  <---------MYB111(1)           ----------->GT1   <----------DOF2   <---------AHL20(2)  <---------MYB59  --------->WOX13(1)          <-----------GT1      --------->AHL20(2)         <----- ----------GT1  <-----------HVH21     --------->YAB1        --------->AHL20(2)  <---------ARR11(3) -AHL20(2)--------->ARR11(3)  <--------P  ---------->DOF2<---------ANAC55(2)    --------->ARR11(3)  <   tttacctactaaaatctgtgtcagtcaaaagagttggtaaaaataaaagttactttgttacataaaatataaaaatagcattgatcttattgtttgattc  19832700                                                                                 --------->AHL20(1)                                                                                 <---------AHL20(1)                                                                                 <---------AHL20(2)                                                                                --------->AHL20(2)                                                                                <---------AHL20(2)                                                                                --------->YAB1                                                                               <---------YAB1                                  <---------ANAC46                           --------->YAB1                               <-----------RAV1(1)                           <---------ICU4                              <---------TOE2(3)                             <---------ATHB51                           --------->AHL20(2)                               --------->ICU4                 ----------->RAV1(1)                                        <---------AHL20(2)                --------->bZIP60(1)     <-----------GT1                     --------->AHL20(2)     --------->ANAC58      <---------YAB1                                --------->AHL20(2)     --------->ANAC58      <---------AHL20(2) --------->ZAT14            <---------AHL20(2) --TEIL         <---------bZIP60(1) <---------ANAC46<---------TOE2(3)   --------->AHL20(2) ---------------AtSPL3   --------->YAB1<---------ZAT14                --------->YAB1 ----------->GT1   attaagtacgaaaatatgacaacacaaatataaatgttgtgtttactgtttactaatgaaatgaaaacagattaataaataattatattgaaaatttaga  19832800                      --------->ZAT6                     <---------At5g28300         ----------->GT1                    <-----------GT1       ---------->DOF2           <----------DOF2           --------->At4g35610                                     --------           <---------DAG2            ----------->GT1                                    ----------->GT1        <-----------GT1            <------ZmHOX2a(1)                              <---------MYB52(1)   aatttcaaatatacttttttttttacagtaagcttgaggagcttaaaagaagagttactcaaaccaattgagttttttttttctgttatatagtaatttt  19832900                                   <---------PCF2                                  <---------ANAC46                                  <---------ANAC58                                  <---------ANAC58                                 <-------TEIL                             <-----------RAV1(1)                            ------>ZmHOX2a(2)                           --------->CCA1(2)                           <------ZmHOX2a(2)                           --------->ARR14(1)                          --------->AGP1                          <---------AGP1                          <---------ARR14(3)                          --------->ARR14(3)                          <---------ARR11(3)          --------->ALFIN1                     <---------ZAT6                          <---------ARR14(2)          <---------ANAC46              <------MYB83-----                          --------->ARR14(2)       <---------DEAR3(1)               <------MYB46(1)-- <---------ATHB12         --------->ARR11(3)      <---------ORA47(1)               <---------MYB46(3) ->ICU4                 ----------->ARR10       <---------SPL7---------->DOF2     --------->ALFIN1---   tcaatgaagtgaatggtatgtgtgataagatctggtgcgtccaaattggatggacggtgtagattaaagagaaggaataagagagtgggtctagtgagaa  19833000  Previous    Next  AGI:  At3g53460.1    Description:  CP29 (chloroplast 29 kDa ribonucleoprotein); RNA binding / poly(U) binding. Identical to 29 kDa ribonucleoprotein, chloroplast precursor (RBP29) [Arabidopsis Thaliana] (GB:Q43349;GB:Q94BT1;GB:Q9LFH2); similar to 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative [Arabidopsis thaliana] (TAIR:AT2G37220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18164.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 19830188    to: 19832483    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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