Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------ZAT2                         --------->At4g35610                         <---------At4g35610                         --------->ZAT2                         <------NtERF2                         --------->ATERF1(1)                       <-----------RAV1(2)                      --------->ATERF1(1)                --------->At4g35610               ---------->DOF2                      --------->HSFB2a(2)            --------->ANAC58                    <----------DOF2   ----------->GT1            --------->ANAC58                   *TSS <---------HSFB2a(2)          --------->MYB52(1)                <---------TOE1(3)  <------ZmHOX2a(1)              <------  --------->DAG2      <------NtERF2         <---------TOE2(3)<---------------AtSPL8    <---------TOE2(3) ---------->DOF2--------->DAG2         <----------DOF2   <---------At4g35610           <---------TOE1(3)   tcaaaaagtggcaaacgaaaaggaggcagctgcgaaatgagcttttagggttttttggaagatgaggaacgtattaagtggtcgagattagggtttcttt  19821500                                               ------->GAMYB                                               ------------>CBF                                             >>>>>>>>>MYB98                                             -------->P<---------AHL20(2)                                             ------>MYB83                                             ------>MYB46(1)                                      --------->MYB46(3)                                     --------->SPL7  <---------YAB1               <---------ETT(2) --                          ------>ZmHOX2a(1) <---------ALFIN1                  <---------TOE2(3)  ----   <---------At4g35610    <----------DOF2  <---------ALFIN1         <-----------GT1             <---- ----DOF2    <-----------GT1       <---------SPL7   --------->AHL20(2) <----------DOF2    ---------->DOF2   tgttccgatgctaaattactaacttatcctttcatttcgaacggcccaacccaatattatatgggcttagtaactttactaatgtagaccattgaagccc  19821600                                                                                                   --                                                                                                 <---                                                                                         --------->MYB46(3)                               <---------------AGL15                                    -------->P <-                              <-----------------AGL3          ----------->GT1          --------->WOX13(1)        <---------------------WRI1                       <------MYB46(1)    <-----------GT1---------- ------->REM1(2)              ======================================================================= ----->LBD16                  <-----------------AGL2     <------MYB83   <---------MYB52(1)------->GAMYB -----ANAC46     <---------ATHB12             ------>ZmHOX2a(2)    <-----------GT1    --------->MYB46(3)   gtgtataatcttcggtacaatcaagtctcggttctattactggtttgatcgcaaatatttggtttagttaaaccgtttctacttctcatcaaccaaagtt  19821700                                                                                       <---------ICU4                                                                                    --------->YAB1                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                            --------->At4g35610                                                                            --------->GLK1(1)                                                                            <---------GLK1(1)                                                                            <---------At4g35610                                                                           <---------AGP1                                                                           ------->TEIL--------->ATHB12                                                                           --------->ARR11(3)           <------ZmHOX2a(1)                                               --------->ARR14(2)     <------ZmHOX2a(1)                                                     <---------ARR14(2) <---------MYB52(1)                                                     --------->ANAC55(2)    <----- ------------->AGL15                                                    <---------ANAC55(2)   <------ ------At5g28300  ---------->DOF2                                       --------->ANAC46<------------CBF --------ZAT6 <----------ID1                            <----------DOF2<---------LBD16 --------->YAB1 >DOF2  <------ZmHOX2a(1)                               <---------DAG2<-----------GT1 <---------YAB1 ==============MADS_MADS     ------->TEIL   --------->YAB1          <----------DOF2--------->ICU4   actgttaggaggaggagagacaaaggagttgaatctcgaggcaaaatcaaaatccaagctttttctagggttttacggatctgcgattatcattgttctg  19821800                             -------->P                            <-----------GT1                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)                         <---------ARR11(3)                         --------->ARR14(2)          --------->GLK1(2)                         --------->AGP1--------------->AGL15                         --------->ARR11(3)   <---------ANAC58                         <---------AGP1<---------------AGL15                         <-----------ARR10    <---------ANAC46     <----------DOF2     <---------ARR14(2)   <---------ANAC55(2)                                ---- ----ANAC46             <---------CCA1(2)     <---------ANAC58                 *TSS   <----------DOF2 ---LBD16        <---------GLK1(2)    --------->TOE2(3)                 <-----------GT1      <-------   ggtatttcttttttttagtgattctcagatctaccatttttcttaatttcgtaagaatgtgttgttaagagatttaacaagttagagactttgtttttcc  19821900                                             ------>NtERF2                                            --------->DEAR3(1)                                           --------->ATERF1(1)                                           --------->RAP2.3(1)                                           <------NtERF2                                           <---------ALFIN1                       <---------GLK1(2)                                          ------>NtERF2                           <---------ARR14(2)                                          <---------At4g35610                     --------->ARR14(2)                                          --------->At4g35610                 <---------ZAT14                                      ===========================HOX2a_HOX2a  --------->ZAT14           ----------->TGA1           ------>ZmHOX2a(1)                       <---------At4g35610    <-------GAMYB             --------->DEAR3(1)                       <---------CCA1(2)   <---------MYB46(3)   <---------ARR14(2)<---------ATERF1(1)        <---------CCA1(2)          <----   --------->MYB52(2)   --------->ARR14(2)--------->LBD16 <------ZmHOX2a(2)   --------->At4g35610 ----->LBD16       ----------->GT1<---------SPL7 --------->ARR14(2)<---------ANAC58             ----- ----GT1   ----------->HVH21<---------At5g28300  <---------ARR14(2)<---------ANAC58--------->GLK1(2)   ccagttcgttgaaatgacgagaagaaaatccaccgtcgtcctgccgcagcctattcgtcgatcagcgaggcttatctctctgcagaatcgagatagtcaa  19822000              --------->CCA1(2)              <------ZmHOX2a(2)             <---------AGP1             --------->AGP1             <---------ARR14(3)             <-----------ARR10             <---------ARR14(2)             --------->ARR14(2)             <---------ARR11(3)             --------->ARR11(3)             --------->ARR14(3)         ---------->DOF2        <------ZmHOX2a(1)      --------->ARR14(2)        ==============HOX2a_HOX2a --------->TOE1(2)                                              <---        =============HOX2a_HOX2a --------->DEAR3(2)                                              ----      --------->LBD16          <---------ARR14(2)                                            <-------     <---------LBD16        --------->ANAC58        <---------HSFB2a(2)               --------->ARR14(2)     <-----------RAV1(2)  <---------ANAC46          --------->HSFB2a(2)               <---------ZAT14    --------->TOE1(2)<----------DOF2 --------->ANAC46<------NtERF2                    <---------ZAT18 -----ANAC55(2)------>ZmHOX2a(2)--------->PCF2     <---------LBD16                    --------->ZAT14 ------>GT1----------->ARR10--------->ANAC58     <-----------HVH21                    <---------ARR14(2)   gtgaaacccaggaaagatctgggctttggctcggaacccacgaagaaaactcgtcgggaagtcttaagaggtctatcgaagagattagtatactcatcgg  19822100                                                                     ------>ZmHOX2a(2)                                                                    --------->GLK1(1)                                                                    <------ZmHOX2a(2)                                                                    <---------GLK1(1)                                                                    =================================              <-------TEIL                                         --------->ARR14(2)             --------->CCA1(2)                                     <---------ARR14(2)             --------->ARR14(1)                                    <---------ARR11(3)            <---------ARR14(2)                                    --------->GLK1(1)            --------->ARR14(2)                                    <---------GLK1(1)           --------->HSFC1(2)                                   <------ZmHOX2a(1)           ---------           --------->HSFB2a(1)                                <---------TOE2(3)             <--------           <---------HSFB2a(1)                         --------->LBD16            <---------HSFB2a(2)           <---------HSFC1(2)                         --------->ANAC46            --------->HSFB2a(2)          ----------->ARR10                           <---------ANAC58           <---------ANAC46      <---------ATHB12                                <---------ANAC58        <----------DOF2    ---- ------ARR14(2)                                    <---------ARR14(2)================================ ----->ARR14(2)           --------->ARR11(3)      <---------GLK1(1)--------->ARR11(3)      <---------KAN4(2) --At4g35610--------->ARR11(1)                    --------->GLK1(1)<---------ARR14(3)      ----------   atagtccaatcgaagattcgaggtcgaagaaattgaacatttcgaaagatgggtttccgtcgctaaggagatctcttaggctttcgagtagggaatgtcc  19822200                                                            <---------ALFIN1                                                            --------->AtMYB61                                                           --------->MYB46(3)                                                        --------->DEAR3(1)                                                        <---------ETT(2)                                                        --------->ETT(2)                                                        --------->WRKY12       ---------->DOF2                                  --------->WRKY38(1)    --------->ZAT18 ===HOX2a_HOX2a                                --------->ANAC46                --------->ZAT14 >HSFB2a(1)                                    --------->ANAC58                <---------ZAT14 -HSFB2a(1)                                    --------->ANAC58       ---------->ID1 -->ZmHOX2a(1)                                <---------TOE1(2)     <---------ANAC58             <--- ===HOX2a_HOX2a            ------->TEIL   <---------HSFB2a(2)       <---------ANAC46             <--- >TaMYB80            --------->ZAT6       --------->HSFB2a(2)       <---------ANAC58            -----   tgaagtcaacaaagagaagcctaagactgcatctacttcatcttctcgcacgaaatcgtcgaccactgtttcgtcttcttgtgctctgagacgttctcct  19822300                    --------->ARR14(2)                    <---------ARR14(2)                    --------->GLK1(2)                       --------->ANAC55(2)                   <---------GLK1(2)                        <---------ANAC55(2)             <------ZmHOX2a(1) --------->WOX13(1)          --------->MYB59                   <-------        --------->ALFIN1     <------ZmHOX2a(2)            <-----------RAV1(2)           --------->ANAC58 ------TOE1(2)  <------ZmHOX2a(1)      <<<<<<<<<TBF1   <---------GLK1(1)                --------->ANAC58 ------TOE2(2)  ====================HOX2a_HOX2a     --------->ANAC58           --------->At4g35610 ->ZmHOX2a(1)=======================HOX2a_HOX2a     --------->ANAC58<---------ZAT6   <---------SPL7   aggttttcaagtggaggaggagaatctgtggatcaatcttcttcttccattgggaagaaatcaggtaatagtgttttgagtagctgtagtacgaaatcaa  19822400  Previous    Next  AGI:  At3g53430.1    Description:  60S ribosomal protein L12 (RPL12B). Identical to 60S ribosomal protein L12-2 (RPL12B) [Arabidopsis Thaliana] (GB:Q9LFH5); similar to 60S ribosomal protein L12 (RPL12A) [Arabidopsis thaliana] (TAIR:AT2G37190.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75443.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911) Range:  from: 19820665    to: 19821447    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g53440.1    Description:  DNA binding. similar to hypothetical protein OsJ_002284 [Oryza sativa (japonica cultivar-group)] (GB:EAZ12459.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057) Range:  from: 19821879    to: 19823648    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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