Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         ----------->GT1      --------->DAG2     --------->DAG2                                        --------->At4g35610    ---------->DOF2                                     --------->At4g35610 --------->RAV1(1)                                      <---------At4g35610 --------ID1                                            <---------ZAT2 ---->ANAC58                                     ----------->HVH21 ---->ANAC46                                     ----------->TGA1 ---->ANAC58                                   --------->At4g35610 --->DOF2                      ---------->DOF2 <---------At4g35610                          <-------- ->AtMYB61            ---------->DOF2  <-----------GT1 ------->TEIL              ------>ZmHOX2a(1)   gcaacaaaaaggtaacatttttgagaaagtagagaaagaaattactcgctggtgacgaagctgatgaattcagagacacattcctgcatagtctctttag  19786800                                                                                                -----                                                                                            ---------                                                                                       --------->KAN4(1)                                                                                      <---------KAN4(2)                                                                                      ------->TEIL               --------------->AGL15               <---------YAB1             <---------At4g35610               <---------------AGL15        <---------RAP2.6(2)  --------->ANAC58  --------->ANAC58              ----------------->AGL3      --------->CCA1(2)      --------->ANAC58  --------->ANAC58 <----------DOF2      <---------ZAT6     --------->ARR11(1)  --------->YAB1   --------->At4g35610 --DOF2     <-----------GT1            <---------YAB1      --------->MYB52(1)------>ZmHOX2a(1)  <----   catctttagcgattttgccatttagaggtaaacctctcttcatgatacggcttatgttagcaatcggaagaaacctgtcctgctcacgaacattcaaaga  19786900                                                 <---------MYB52(1)                                             --------->MYB52(1)                                            --------->DEAR3(1)                                           <---------MYB55(2)                                           --------->MYB46(3)                                         --------->DEAR3(1)                                         <---------ALFIN1                                         --------->AtMYB61                                        --------->MYB46(3)                                      --------->DEAR3(1)                                      <---------ALFIN1                                      --------->AtMYB61                            <---------ANAC58<---------ALFIN1                 <---------ALFIN1    --------->MYB46(3)               ------>NtERF2<---------ANAC58--------->AtMYB61               --------->ABI4(1)   --------->DEAR3(1)              --------->DREB2C(2)  <---------ALFIN1          ------>NtERF2 ---->ARR11(3)--------->ANAC46     --------->AtMYB61     --------->ARR14(2)           --------->MYB59 ->DOF2     <---------At5g28300   --------->MYB46(3)     <---------ARR14(2)     <---------ARR11(3) -----ARR11(3)--------->DEAR3(1)  <xxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->GLK1(1)<--------P   cctcgggctctgatcaccgccactctcatggcttccaccaccaccaccaccggtttgcgattcggccatctcagaaaccctagataatcaggtagagatt  19787000                               --------->DAG2                 <------ZmHOX2a(1)           --------->GLK1(2)  ---------->DOF2                           --------->ARR14(2)      --------->LBD16  ------>MYB46(1)                                  <---------ARR14(2)    <---------LBD16    ------>MYB83                    ----------->RAV1(2)       ---------->DOF2  <---------ARR14(2) --------->AtMYB61       --------->ATHB12       <------ZmHOX2a(1) <---------GLK1(1)   <---------MYB59        --------->ICU4         ----------->GT1       ----------->HVH21 --------->GLK1(1)<---------ARR14(2)      ----------->GT1     >>>>>>>>>TBF1    ---------->DOF2   ----   gggaaatcgggagaatcgaggaaccaaacccagaaagcgcgaagaagtgattagaatacctgaagaagaaggagaattcgaaaaagagcgggagacggag  19787100                                                         ------>ZmHOX2a(2)                                                         --------->DEAR3(2)                                                         ==========================HOX2a_HOX2a                                                       --------->ARR14(2)                    <---------ARR14(2)                 <---------ARR14(2)          *TSS                    ----------->HVH21               ------>ZmHOX2a(2)          <---------ANAC46          <---------WOX13(1)                        ===============================HOX2a_HOX2a        --------->ATHB12                           <---------At4g35610         <---------ANAC58       --------->ICU4                          ====================================HOX2a_HOX2a       <---------YAB1                          ------>ZmHOX2a(2)               <---------ANAC58     --------->YAB1===================================HOX2a_HOX2a        --------->CCA1(2)    --------->ICU4 <------ZmHOX2a(1)          <---------At4g35610       <---------ARR14(2) ------->GT1    <------ZmHOX2a(1)        --------->CCA1(2)----------->HVH21 <------ZmHOX2a(1)   agagaaatgatgattggaggaggagacggagatggagagagagatttgatctgatctgatccgacgctggagaagataggagcttgtatgcgattcaacg  19787200                          ------>NtERF2                         <---------ALFIN1                    <-----------GT1               --------->AHL20(2)               <---------AHL20(2)   <---------AHL20(2)                                       ------>ZmHOX2a(1)           <---------AHL20(2)  <-------TEIL                   ------>MYB83                  ---------          <---------AHL20(2)  <---------MYB52(1)              ------>MYB46(1)   <----------DOF2      <----------DOF2 --------->ETT(2)                    ------------------------>ANAC81<-----------GT1   atttagggcttttttatttttttatcgacaccgttcattttttttttgttaatttgacaaaaccaaacaaacaaaaaaaactcttttgttttttcctcaa  19787300                                            <---------AHL20(1)                               <---------ANAC46                               <------MYB46(1)        <---------AHL20(2)                               <------MYB83 --------->AHL20(1)                               ----------->GT1       --------->AHL20(2)                              --------->MYB46(2)   <---------ARR11(3)                <---------DAG2--------->MYB59--------->CCA1(2)                --------------->AGL15  --------->AHL20(1)        ----------->GT1                <---------------AGL15  <---------AHL20(2)      --------->ZAT14                   ----                <----------DOF2<---------ANAC55(2) --------->ARR11(3)    <---------AHL20(2)      ----      <----------DOF2       --------->ICU4 --------->AHL20(2)  <---------ZAT14         <---------ANAC55(2) >TOE2(3)      <-----------------AGL3  --------->AHL20(2) <---------AHL20(2)         --------->YAB1   caatgtttctttgttctgctttttttagtaattaggtgaaataaaatatataagatttatttcaatgtagtgaatttttttcttctatcatgtaaactat  19787400                                                                                                 ----          --------->ATHB12 >>>>>>>>>EIN3          --------->AHL20(2)                             ----         <---------YAB1   <-------TEIL            <---------AHL20(2)       <---------YAB1        <--- ------->GT1         --------->AHL20(2)          --------->AHL20(2)      --------->YAB1        <----- ----->YAB1     <----------DOF2      <---------TOE2(3)<---------AHL20(2)<---------YAB1      ---------   agtaaaaaaacatgatttcttttttatatacattgtatttatgtaagtggatttaatttatctaaatagttgttatgataagtggtttttctcagtgaca  19787500                               --------->AHL20(2)                               <---------AHL20(2)                               --------->ATHB51                              --------->ICU4                           --------->AHL20(2)                           <---------AHL20(2)                          <---------AHL20(1) ----->ANAC55(2)          <---------AHL20(2)                    <---------YAB1 ------->GT1  <---------AHL20(2)          <----------DOF2      <----------DOF2                    --- ------ANAC55(2)          --------->AHL20(2)                 <---------YAB1                     ----- ----ANAC46   --------->AHL20(2)   <---------AHL20(2) <---------ANAC58             <---------YAB1 --- -->HVH21    --------->AHL20(2)<---------ICU4         <---------ANAC58  <---------AHL20(2)<----------   tgtaatttctacttatttaattgtctaatttaattatttaagtggtttactgtttttcttgttatctttattgttttattcagtttttattctgtcattt  19787600                                                                                                    -                                                                                                    <                                                                                                    -                                                                                               <xxxxx                                                                                            xxxxxxxxx                                                                                           <---------ZAT18                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                    --------->DAG2xxxxxxxxxxxxxxxxxxx                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------AHL20(2)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------AHL20(1)                                       --------->YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------AHL20(1)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->AHL20(1)                                        <---------AHL20(2)------>ZmHOX2a(1) --    --------->AHL20(2)                                        --------->AHL20(2)--------->TOE2(3)xxxx ------>ANAC58                                         <---------ARR11(3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->DOF2                                            --------->ARR11(3)<---------TOE2(3) --------->ZAT18 ------>ANAC58        --------->YAB1   ----------->GT1<---------CCA1(2)  --------->MYB59 xxxxxxxxxxxx -HVH21--------->AHL20(1)     <---------ZAT6      --------->TOE1(2)---------->DOF2xxxxxxxxxxxxxxxxxxx   aagcaaatatatatttgtttggaatcaaaatagtattagttttgtaataaaacctagtatcttatataataaagtaaggtttcctcaaacttgtgctcta  19787700  Previous    Next  AGI:  At3g53340.1    Description:  transcription factor. Identical to Nuclear transcription factor Y subunit B-10 (NFYB10) [Arabidopsis Thaliana] (GB:Q67XJ2;GB:Q9LFI3); similar to CCAAT-box binding transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G37060.2); similar to CCAAT-box binding transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G37060.3); similar to CCAAT-box binding transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G37060.1); similar to transcription factory NF-YB [Salvia miltiorrhiza] (GB:ABD91517.1); contains InterPro domain Transcription factor, NFYB/HAP3, conserved site; (InterPro:IPR003956); contains InterPro domain Transcr Range:  from: 19785309    to: 19787183    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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