Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------ALFIN1                                                                               --------->ZAT18                                                                               <---------ZAT14          <---------MYB111(1)                                                  --------->ZAT14          <---------MYB59                                                      <---------ZAT18         --------->ANAC55(1)                                                 <-------MYC3       --------->REM1(1)                                                     ------->MYC4  <-----------GT1      <----------DOF2                    <-----------GT1    ------->MYC3 ------->YAB1  <-----------GT1                      ----------->GT1          <-------MYC2        ---- --->ICU4--------->ANAC46                          ----------->GT1           ------->MYC2       <---- ----AtSPL8 ------>MYB83                       <---------YAB1   <---------ATHB12  --------->ANAC46 --->AtSPL8 ------>MYB46(1)         ------->TEIL   <---------ZAT6    --------->YAB1 --------->ANAC46   attttaactacacctaatttccatactttctgtttatgaactcactcttatgagtgttaaataccattcattcatcacatgtgcacacctcaagtcttat  19745300                                                                  --------->bZIP60(1)                       --------->bZIP60(1)                        --------->ANAC46                       --------->TGA2(1)                          <---------bZIP60(1)                       <---------bZIP60(1)                   --------->REM1(1)                  <------ZmHOX2a(1)                        <----------DOF2                 <---------YAB1                          --------->At4g35610       --------->AHL20(2)     ---------->DOF2        --------->ARR14(2)            <---------ARR14(2) ----->YAB1     <---------TOE2(2)                    <---------ARR14(2)            --------->ARR14(2) -----YAB1      <---------TOE2(3)                    <-----------GT1        <----------DOF2   caaaaacatatatatacttaggattacatcacaaaagcagaaaacataggcttaatatccgcttcatcacatcacagtctttacatatactgatatacac  19745400                                                                                               <-----                                                                                            <--------                                                                                            ---------                <---------At4g35610                                                      <---------ALFIN1                --------->At4g35610                                                      --------->DEAR3(1)                <---------GLK1(1)                                                        --------->AtMYB61                --------->GLK1(1)                                                       --------->MYB46(3)              <------ZmHOX2a(1)                                                       <---------ALFIN1      --------->O2                     <----------DOF2                                --------->AtMYB61      <---------O2                  --------->ARR11(3)                                --------->DEAR3(1)      --------->ANAC55(1)           <---------ARR11(3)                               --------->MYB46(3)      --------->ANAC58             <---------CCA1(2)          <-----------GT1      --------->AtMYB61      --------->ANAC55(2)     --------->ANAC58       <---------At4g35610           <---------ALFIN1      --------->ANAC58        --------->ANAC46   <-----------RAV1(1)              --------->MYB46(3)      --------->ANAC46        --------->ANAC58 <---------ANAC46 ----------->RAV1(2)--------->DEAR3(1) --------->ARR14(2)           --------->bZIP60(2)===========================RAV --------->ANAC46   -- <---------ARR14(2)  <----------DOF2<---------ARR11(1)<---------ANAC46          <---------ALFIN1-----   acatatacacgtcttaggagctcctttgtcccaagtcatatcttttttctcgtgttgctgattctaacctgttccatcttctccaccaccaccacctcct  19745500                                                                                       ------>ZmHOX2a(1)                                                                                       ==============                                                                                 =============HOX2a_HOX2a                                                                                 ------>ZmHOX2a(2)                                                                                ==============HOX2a_HOX2a                                                                                <------ZmHOX2a(2)                                                                               <-----------ARR10                                                                               --------->GLK1(2)                                                                               <---------ARR11(3)                                                                               <---------ARR14(2)                                                                               <---------AGP1                                                                               --------->ARR14(2)                                                                              <---------ARR14(1)                                                           ------>ZmHOX2a(1)  <------NtERF2         --------->ANAC46                      <-------GAMYB                  <---------CCA1(2)   <---------MYB52(1)                         --------->MYB55(2)            <---------ANAC46 ----ALFIN1                                  <---------AtMYB61              <---------ANAC58 -ALFIN1 --------->ANAC58                 <-----------RAV1(1)               <---------ANAC58 >AtMYB61--------->ANAC58                 <---------AtMYB61=============================HOX2a_HOX2a ---->ZmHOX2a(1)                          <---------YAB1   ============================HOX2a_HOX2a ->ZmHOX2a(1)                 <---------ANAC46<---------MYB46(3)           <---------LBD16         <-   cctccgtttgcaccccaattgtcaaagttttgtcttggaatgttatggtggttgtctactcctcttgttgatggaatggcggatctgtccttctgaacat  19745600                                                                                  <---------ALFIN1                       <-----------GT1                                            --------->ZAT6                      <---------GLK1(1)                                         ----------->RAV1(1)                      <---------CCA1(2)                                        <---------ALFIN1                     ---------->TaMYB80                                       --------->At4g35610                  <---------ANAC46                                       <-----------GT1     --------             <----------DOF2                                          <--------HAHB4         --------            ------>ZmHOX2a(2)              <---------ALFIN1           <---------ICU4         --------            ================================HOX2a_HOX2a               --------->ATHB51     <---------ALFIN1          --------->ARR11(3)            --------->ANAC46             <---------YAB1     --------->AtMYB61          <---------ARR11(3)         ------>ZmHOX2a(1)          ------->GAMYB--------->ANAC46-------- ==================HOX2a_HOX2a      <---------ALFIN1           --------->MYB46(3) --------->AtMYB61 --------REM1(1)<---------ANAC46 <---------ALFIN1 ---------->DOF2    --------->ICU4    --------->MYB46(3)   ggtgaagcctctgatcttttgtgtatatccctctccctcctccctccacagttaaagagctcataaccaccattattaccagcaccactaccaccacgac  19745700                                                    <----------DOF2                                                    <---------------AGL15                                                    --------------->AGL15                                                   <-----------------AGL3                                               <----------DOF2                            --------->ARR11(3)                                       ------------>CBF                                  <---------GLK1(1) <---------ANAC58                     --------->ANAC58                               ----------->GT1 <---------ANAC58                     --------->AtLEC2                         <---------TOE2(3) ->ANAC46                             --------->ANAC58 <---------YAB1          <---------TOE1(3) ->ANAC58                             --------->ANAC46<-----------TBP    <---------TOE2(3)<---------ARR11(3) ->bZIP60(2)                 <---------ANAC58 <---------ANAC58           --------->MYB59 --------->GLK1(1) ->ANAC58                    <---------ANAC58 <---------ANAC58<------------CBF --------->MYB59    <--   atgccttgtctgaatttgcatttttgttttgtcttgtttcatgcaatagctttcctttttatagaattgagaagtaaggtttaggtatgggaaatcttgc  19745800                                                         --------->AHL20(2)                                               --------->ATHB12                         <---------ANAC58                                             <---------WOX13(1)                         <---------ANAC46                                            <------------CBF                            <---------ANAC58                          <----------ID1   --------->ATHB12 <---------WOX13(1) <---------YAB1                        ---------->DOF2  <---------WOX13(1)<------------CBF   <------------CBF    <--                --------->ZAT6      ---------->DOF2    <----------DOF2    <---------MYB46(3)--------- -------At4g35610     <------ZmHOX2a(1) <------------CBF <---------AHL20(2) <---------YAB1  ---------   aactgttttctgtgtgttccactaggaaaagacaaaacaaaagattgattgattagcctttaattgatgtgtttgtttgttattgttgtgacttgtgacg  19745900                                                             ----------->GT1                                                        <---------DOF5.7(2)                                                        ---------->DOF2                                                      <---------MYB52(1)                            -                                                 <---------ALFIN1     ----------->RAV1(1)           <                                            --------->HSFB2a(1)      --------->ANAC58              <-                                            --------->HSFC1(2)       --------->ANAC58              --                                <-----------------AG --------->At5g28300                           --                       <---------ICU4       <---------HSFC1(2)       <----------ID1              <---                       --------->YAB1       <---------HSFB2a(1)      --------->ANAC46          <-----                      --------->ICU4      ---------->DOF2--------->DAG2              --------->YAB1-- -------YAB1        --------->YAB1       <------ZmHOX2a(1)  --------->ALFIN1      --------->WOX13(1)< -->HVH21   ---------->DOF2     <-----------------AGL1--------->DOF5.7(2)      --------->GLK1(2) <--- -->TGA1  --------->YAB1        =====================================================================   atgatacaaaaatcaaaagaaataataatcactcatccaaataggaaagttccaccgttaaagtggtgaagacgacataagaatcaatgagaagaattgg  19746000                <---------HSFB2a(1)                <---------HSFC1(2)                --------->HSFC1(2)      --------->LBD16     <---------------AGL15     --------------->AGL15    <-----------------AG    ----------------->AGL1    <-----------------AGL1    ----------------->AGL2 -------->At4g35610 ---------At4g35610 --------MYB46(3)                                    --------->YAB1 ------->MYB111(1)                                  <---------ATHB12 ------->MYB46(2)                                   <---------YAB1                               <--- -----P    ----------->GT1 XXXXXXXXXXXXXXXXXXXX>MIR841B*                                         <--- ----MYB46(3)===============================HOX2a_HOX2a                                          ---- ------->MYB52(2)    <-----------GT1          <----------DOF2                           <---------WRKY12 -------GAMYB<------ZmHOX2a(1)            <----------DOF2                          ---------->DOF2 ------MYB52(1) --------->HSFB2a(1)      <---------DAG2          <---------YAB1  --------->AHL20(2) ====================MADS_MADS       <------ZmHOX2a(2)      <----------DOF2      <---------AHL20(2)   ttagttgcccgaataggaaatttccaccatttctagtggatcacctttcttttaatcatagacttttatatttgtttgtgtaattaaaagtcaatgggat  19746100                                                    <--------ATHB1                                                    --------->ATHB12                          --------->ANAC46          --------->YAB1             <---------ANAC58                          --------->ANAC58          <---------ICU4             <---------ANAC58                          --------->ANAC58         --------->ICU4          <---------ANAC58 ---MYB46(1)  ----------->GT1              <---------YAB1                  <---------ANAC58 ---MYB83    --------->DAG2        --------->ANAC55(2)           <----------DOF2 ------->GT1---------->DOF2      <-----------GT1   <---------ATHB12  <---------YAB1   ggtaacaacttacataaagtaaaatttcaagcaatttacataattttcattcaatgatttcattcttctttctaatagcatgcgttgatagccgaacaag  19746200  Previous    Next  AGI:  At3g53240.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G25470.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44318.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype (InterPro:IPR003591) Range:  from: 19744744    to: 19750159    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g53235.1    Description:  unknown protein Range:  from: 19744816    to: 19745673    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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