Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->ATERF1(1)                      <------NtERF2                     <---------DEAR3(2)                     <---------RAP2.3(1)                     ------>NtERF2                     <---------RRTF1(1)                     <---------ERF1                     <---------ATERF1(1)                    <---------DEAR3(1)                    <---------RAP2.6(2)                    <---------RAP2.3(2)                    <---------RRTF1(3)                    <---------RAP2.3(3)                   --------->RAP2.6(3)                 --------->O2                 --------->TGA1a                      --------->LBD16                 <---------TGA1a                    <---------LBD16                 <---------O2                     <-----------GT1                 ====================bZIP_DOF<------MYB83                 --------->ANAC46            ----------->GT1         --------->ZAT2                 <---------AHL20(2)         --------->GLK1(1)              --------->AHL20(2)         <---------ZAT2<-----------ARR10--------->AHL20(1)         <---------At4g35610           <---------ATHB51      --------->DEAR3(1)  <----------DOF2    <------MYB46(1) ---->ICU4     --------->MYB52(1)      <---------ATHB12----------->GT1 --AHL20(2)   ------>ZmHOX2a(1)        --------->AHL20(2)       --------->ARR11(3) ->AHL20(2)   ----------->HVH21        <---------AHL20(2)   --------->YAB1                  <--------   tatgaacaccgagctcctcacggcggctctttccctctcaaataatttggtttaaccgggtataatgaccttgagaaacattgaagtctctaaatcacac  19733900                                                                             <---------------AGL15                         <---------ALFIN1                                    --------------->AGL15                    ------>MYB46(1)                                         <-----------------AGL1                    ------>MYB83                                            <-----------------AGL2             --------->ANAC58                   <---------LBD16             ----------------->AGL1             --------->ANAC58    --------->MYB52(1)<------ZmHOX2a(1)     <----------DOF2           ---------->DOF2      <---------REM1(2)--------->LBD16  <---------TOE2(3)            <-----    --------->WOX13(1) <-----------HVH21        --------->HSFB2a(2)   ------->TEIL     <-----------RAV1(2) ---GT1--------->TOE2(3) --------->REM1(1)      <---------HSFB2a(2)   <-----------GT1<-----------HVH21   tcttgccaatctcaaaagcaccaagcttcacctctaaacggttttgttttccaggaatgaattgggttaatgtaactttctaatttgggtcaggtttgag  19734000                                                                                            ---------                                                                                            ---------                                                                                <---------AHL20(2)                                                                         --------->YAB1     <--------                                                                         --------->ANAC55(2)---------                             --------->MYB46(3)                         ---------->ID1      ---------                            -------->P      <---------YAB1     ------>MYB46(1) --------->AHL20(2)              --------->AtMYB61          <---------YAB1        ------>MYB83    <---------AHL20(1)              ----------->RAV1(1)      <----------DOF2       <---------MYB59   <---------AHL20(2) <--  <---------ORA47(1)       --------->WOX13(1)               --------->DEAR3(2)--------->ICU4--------- ----TOE2(3) --------->ANAC46<---------ATHB12<-----------RAV1(1)     <----------DOF2        ---------   attggacggtcttccaccacaaaaaatatcaaccattaaaacttttattgttgcccattaagaccgaccttcttttcgtaattttttttttaaaacgtaa  19734100                                 <---------ICU4                                 --------->YAB1 -->GT1             --------->RVE1(1) >ANAC55(2)        --------->ARR11(3) -ANAC55(2)        <---------ARR11(3) >ANAC58           --------->GLK1(2) >ANAC46          --------->CCA1(1)      --------->ICU4               --------->HSFB2a(2) --------DOF2     --------->RVE1(1) --------->YAB1                    <---------HSFB2a(2)     ------- >ANAC55(1)     --------->AHL20(2) <---------YAB1           --------->YAB1      <-----------------AGL1 >ANAC58 ----------->GT1        --------->ICU4         --------->AHL20(2)    <----------DOF2 <-------   ctttgttgaatttgtaaaaaaaatctcttgtgaaattatcacaatgtttattcaaaactaaataagaacatactagaagcttttctaaattggaagatgt  19734200                             <---------ICU4                             --------->YAB1                             -------->HAHB4                            --------->ICU4                            <---------YAB1                            <---------ATHB51                                                  -------                          <---------ICU4                                             ---------->ID1                          --------->YAB1                                         --------->GLK1(1)                         ============================================================================                         <---------YAB1                                    --------->MYB52(1) <------                         <---------------AGL15                   --------->YAB1 <---------ARR14(2)                         --------->ICU4                <---------TOE2(3)--------->ANAC46      -------     --------->AHL20(2)--------->YAB1                 <-----------GT1   --------->ANAC58    --------- ---->GT1           --------->YAB1              --------->AHL20(2)      --------->ANAC58  ----------- --ARR11(3)     ---------->DOF2                ----------->TBP<----------DOF2   --------->ARR14(2) --   ataaaaaaaaaatagaagaaaagaataataataatggaaaacaaatactataaaataaacgtttctttgataacaagaaacggatttgtcttctatataa  19734300                                    --------->HSFB2a(1)                                    --------->HSFC1(2)                                    <---------HSFC1(2)                                   <-----------ARR10                                   <---------ARR11(1)                                   --------->ARR14(2)                                   <---------ARR14(2)                                   ------->TEIL                                  <---------CCA1(2)                               <---------HSFB2a(2)     --------->ANAC46          --------->HSFB2a(2) -->AHL20(2)                   --------->HSFC1(1) =====MADS_MADS          --------->ZAT6 ---AHL20(2)       --------->AHL20(2)                                                            ---- ---->TBP----------->RAV1(2) *TSS <---------ARR14(1)                                          <------ -->TBP<---------ALFIN1<-----------GT1                                                        <------ ---->AGL15        <---------AHL20(2)    <----------DOF2   <---------ARR11(3)            <---------ICU4 ------->AHL20(2) --------->AHL20(2)<---------HSFB2a(1)    --------->ARR11(3)       <---------YAB1<--   ataaaacacacacctgtctatttatttacacttctcgaatcttctttttcttctctgcgaagctctctctctctctctactcgattatcaaacatggcga  19734400           --------->At4g35610         --------->YAB1  <---------At4g35610                               <---------TOE2(3)  --------->At4g35610                               <---------TOE1(3) ----->GLK1(2)              ----------->GT1     <----------DOF2         --------->ALFIN1 ---ANAC58 ----------->RAV1(2)                --------------->AGL15   <-----------RAV1(1) ---ANAC58 <---------At4g35610                <---------------AGL15 <---------ANAC46 -------ATHB12       <---------TOE1(2)     <-----------GT1  <---------MYB52(1)                <------   atcaagctgaatcatctgattcgtaagtacttgttaattactgagtaactctttaaggttttgttagtcttcgtgttggggtttttctaattctattttt  19734500                                                                                    <---------ANAC46                                                                                <---------ANAC58                                                                                <-------GAMYB                                                                                <---------ANAC58                                                          ---------->DOF2      <------MYB46(1)                                                    --------->LBD16            <------MYB83                                                   <---------HSFB2a(2)         <---------MYB46(3)                                                   --------->HSFB2a(2)        <---------AtMYB61                     <----------ID1             --------->ARR14(2)          <---------MYB52(1)     <-                <------ZmHOX2a(1)               --------->GLK1(2)       --------->GLK1(2)         ---             <---------LBD16                    <---------ARR14(2)      <---------ARR14(2)        <--         <---------ARR11(3)                    <---------GLK1(2)        --------->ARR14(2)      -----         <-----------ARR10                  --------->LBD16         <------NtERF2 <---------MYB46(3)         --------->ARR11(3)                --------->DEAR3(1)       --------->At4g35610    --------->ANAC58 ---AHL20(2) <-----------RAV1(2)<------ZmHOX2a(1) <---------LBD16   <---------At4g35610    --------->ANAC58   ttttctctgaatatctcaggaaggggacgaagaaggattttagcaccgcgattctggagaaaaagaaggcagcgaatcgtttggttgtggatgaagccat  19734600              <---------MYB52(1)                          <---------ANAC58             <-----------HVH21                            <---------ANAC58             --------->LBD16                              <---------ANAC46    --------->YAB1                                   <---------DAG2   <---------YAB1                                    <----------DOF2 --------TOE2(3)                                 --------->REM1(1)              <---------TOE2(3) ------>MYB52(1)                             --------->At4g35610             <---------ATHB12 -------DOF5.7(2)                           --------->ANAC58            --------->TOE2(3) ---->DOF5.7(2)                             --------->ANAC58            --------->YAB1            <--   taacgatgataactccgtcgtttctcttcaccctgataccatggagaagctacagctttttcgtggtgatactatcttaatcaaggtttgatttttgaat  19734700                                                                     <---------At4g35610                                                            --------->ATHB12                                   <---------TOE2(3)   <---------WOX13(1) <---------TOE2(3)                 <---------TOE1(3)<---------YAB1   --------->At4g35610     <------- <---------TOE1(3)     <----------DOF2      <---------TOE1(3)       --------->MYB52(2)      <--------P -------AHL20(2)      --------->TOE2(3)     <---------TOE2(3)   <---------MYB46(3)  --------->YAB1   tttaaggctcttcttctcttgtttcctttactgaattagggtttataaggttttgtgattgttcattggtttgctgctagggtttatcagaagggttgtt  19734800  Previous    Next  AGI:  At3g53230.1    Description:  cell division cycle protein 48, putative / CDC48, putative. Identical to Cell division control protein 48 homolog D (CDC48D) [Arabidopsis Thaliana] (GB:Q9SCN8;GB:Q0WQA2); similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to CDC48 (CELL DIVISION CYCLE 48), ATPase [Arabidopsis thaliana] (TAIR:AT3G09840.1); similar to putative spindle disassembly related protein CDC48 [Nicotiana tabacum] (GB:ABF59516.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18187.1); similar to Cell division cycle protein 48 homolog (GB:Q96372); contains InterPro domain AAA ATPase, conserved Range:  from: 19734329    to: 19737650    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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