Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------ZAT14                    --------->AHL20(2)                    <------MYB46(1)          ----------->GT1                             <---------AHL20(2)                    ---------          <---------MYB46(3)                        --------->AHL20(2)                      <------MYB83         xxxxxxxxxxxxxxxx>smallRNA(s)               <---------AHL20(2)                     --------->MYB59        <xxxxxxxxxxxxxxxxsmallRNA(s)            <---------AHL20(2)                         --------->MYB46(2)     <---------ANAC55(1)                        --------->AHL20(2)                       <---------MYB52(1)     --------->ANAC55(2)                     <---------ARR11(3)                      xxxxxxxxxxxxxxxx     <---------ANAC55(2)                     <---------AHL20(1)                      xxxxxxxxxxxxxxxx     <---------ANAC58           --------->YAB1--------->AHL20(2)                     ------->MYC3     <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <-------MYC3    <-------TEIL   --------->ZAT14    --------->MYB52(1)   ----------->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) ---------ICU4  <---------At4g35610<---------ICU4 --------->AHL20(2)     <---------YAB1 <-------GAMYB ------->AHL20(2) ------->GAMYB<---------YAB1--------->ARR11(3)        <-----------GT1 <---------MYB46(3) ---->LBD16     --------->At4g35610--------->YAB1 <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   aataaatacgtgcggttcaactgcaatgcagttctaataataacgaatatatatatatatatagataattttgttactattggaacatgtggttaggtta  19724500              <---------AHL20(2)              --------->ATHB51              -------->ATHB1              -------->HAHB4              <---------ICU4              --------->ATHB12                       <------MYB46(1)             --------->ICU4                          <------MYB83             <---------ATHB12                        <---------MYB46(3)             <---------YAB1                         <---------AtMYB61             <---------ATHB51                      <--------P        --------->TOE1(3)                          <---------MYB52(1) -->GT1 --------->TOE2(3)                        <-----------RAV1(1) xxxxxxx>smallRNA(si3)  ----------->GT1          ------>ZmHOX2a(1) xxxxxxx>smallRNA(i2)  --------->MYB59   --------->YAB1   <---------AtMYB61                      ----   caatttcaaaccctaattattgattttggtaatttggatgtattcatattcctgttggttttggtctactcaaaatgttagtaaatctcttatgggatgt  19724600                                                                                                -----                                                                                                -----                                                                                            <--------                                                                                            <--------                                                                                           <---------ANAC55(2)                                                                                           <---------bZIP60(1)                                                                                           --------->ANAC46                                           --------->ZAT6                              <---------AHL20(2)                                         --------->YAB1                               --------->YAB1                                 --------->GLK1(1)                                   <---------YAB1                             <---------HSFB2a(2)                                 <-------GAMYB  <----                     <-----------GT1    <---------ICU4                      ------->PIF5   --------->bZIP60(1)       --------->TOE2(3)     --------->HSFB2a(2)     --------->YAB1         <-------PIF5 <-----------GT1 --->TEIL        <----------DOF2--------->ARR14(2)  <-------TEIL --------->ZAT6 ----------->GT1 -----   atcgaattaacttaaaactcttttttctggtccagaaacccattaatactagcattcatattgtatagcactatagctcgtggggttattataacgtcac  19724700                                                                                           ------>ZmHOX2a(1)                                                                                          --------->TOE1(3)                                                                                       --------->ARR11(3)                                                                                       <---------ARR11(3)                                                                                       --------->ARR14(2)                                                                                       <---------ARR14(2)  <----------DOF2                                         <---------MYB52(1)      <---------YAB1  <---------DAG2                                          ------>ZmHOX2a(1)   <---------ANAC58 ---->O2                         --------->ANAC58        --------->TOE1(3)    <---------ANAC58 ---->bZIP60(1)                  --------->ANAC58        --------->TOE2(3) <---------TOE2(3) ---HVH21                   ----------->HVH21         --------->ARR14(2)   <---------TOE1(3)<-------- ---TGA1      ---------->DOF2 <<<<<<<GRF7             <---------ARR14(2)<---------MYB52(1)--------->TOE2(3) -----bZIP60(1)           ----------->RAV1(2)  ---------->DOF2     --------->ARR11(3) <---------GLK1(1) ---->bZIP60(2)    ----------->GT1           <---------YAB1        --------->GLK1(2) ------->TEIL   atcacttttttgtaataaaagttgaaaaacctgacaagaattcaaatattaaagcctatccttagttaaaatctgttaaggcttatgaatatccttatct  19724800                                                                                <---------ARR14(2)                     --------->ARR11(3)      <----------ID1                     <---------GLK1(2)                     <---------ARR11(3)     ----------->GT1                   ----------->ARR10           <------MYB46(1)                ---------->DOF2                  --------->ANAC58           ----------->GT1         ---------->DOF2                         --------->ANAC58           <------MYB83           --------->AHL20(2)           --------->ARR14(2)          ------>ZmHOX2a(1)          --------->MYB59--------------->AtSPL8                <---------ARR14(2)--------->GLK1(2)        --------->ICU4   <---------------AtSPL8    <------------CBF------>ZmHOX2a(1)------------>CBF -CCA1(2) <---------TOE2(3)  ------------>CBF----------->GT1  <---------MYB52(1)--------->ARR14(2) <-   tatgtgagtaattaggttaattagatattagtacaataaaagaaaaaaggaaaaattgaagaccgtttcctcgagacaagcagattctcaatcctcgaga  19724900                                                                      <--------HAHB4                                                                     <---------YAB1                                                                --------->ANAC58                                                                --------->ANAC58                                                               --------->GLK1(1)                                                              ---------->DOF2  --------->ANAC58                                        ------------------------>ANAC81 <---------YAB1              -                                   ----------->GT1         --------->ANAC58    --------->ANAC58     -                                   <----------ID1          --------->ANAC58  ---------->DOF2        -      *TSS                  <---------------AGL15     --------->ANAC58--------->ATHB51            ---   --------->At4g35610      --------------->AGL15     --------->ANAC58<---------ICU4         -------- ----------HVH21--------->ZAT14  ---------->DOF2    ---------->DOF2  --------->ICU4         ---------   ctgtcagtggaaaacaacttcactctctctcttcaaaaagaaaaacaaaaatacaaaagccaaggaaagccattattacaaaagcaataacacactgtaa  19725000               --------->ANAC46             --------->ZAT6                                                                         -         --------->ANAC58                                                                           <     <---------MYB52(2)                                                                             < -------->ANAC58                                    --------->ANAC58                                < -------->ANAC58       xxxxxxxxxxxxxxxx>smallRNA(fl3)                                               < -------->ANAC46   ------>ZmHOX2a(1)                --------->ANAC58                                - ------->DOF2--------->HSFB2a(1)          >>>>>>>>>TBF1                                             - ->At5g28300 <---------ALFIN1          >>>>>>>>>TBF1--------->ANAC46                               -- -->GT1  --------->ANAC58              <xxxxxxxxxxxxxxxxsmallRNA(i)                              <---   aaaagccactcacgaacactcctcagtaaccagagagagaagaagaagaacaacaagccatgtcttaactcttaactaatctcttcttctccctccattt  19725100           --------->TOE1(3)           --------->TOE2(3)    ------->GAMYB                                                                                   -   --------->MYB46(3)                                                                               <  ------>MYB83                                                                                     <-  -------->P                                                                                       --  ------>MYB46(1)                                                                                  -- --------->MYB55(1)                                                                                <- -------->AtMYB61                                                        <----------DOF2           <- ---------MYB111(2)                                                      <---------DAG2        <----- ---------MYB55(2)                                           <---------At4g35610               <----- ---------MYB46(2)                                           --------->At4g35610               <----- ---------MYB111(1)                                    ---------->DOF2<-----------GT1          <----- -------->MYB46(3)          --------->YAB1       <---------YAB1    --------------->AtSPL8    <------- -------->DEAR3(1)   ------>ZmHOX2a(1)         --------->YAB1--------->ZAT2                 <-------GAMYB ------->MYB46(3)   --------->TOE1(3)         <---------ATHB12  <-------TEIL               <--------- --------GT1        --------->TOE2(3)         --------->ICU4--------->GLK1(2)        <----------DOF2<   caccaaccaaaaaccctaaaatccttaaaatcacaagtttcttcagcaatgatgcttcaaagaagctgcattgtacttttcttctctctttttctgttgg  19725200 --------->LBD16 -------------->AGL15 ---------------AGL15 ----------------AGL1 --------------->AGL3                                       --------->ARR14(2) --------------->AGL2                                       <---------ARR14(2) ----------------AGL2                                     --------->LBD16 ----------------AGL3                                    --------->ANAC55(1) ----MYB46(3)                                            --------->ANAC46 ----DEAR3(2)                                            --------->ANAC58              --------->ZAT18 -MYB46(1)                   --------->GLK1(1)           --------->ANAC58              <---------ZAT14 -MYB83                   ------->GAMYB                 <---------LBD16                <---------ZAT18 --MYB52(1)   --------->HSFB2a(2)                   ----------->HVH21            <---------ANAC46 --RAV1(1)    <---------HSFB2a(2)                   ------>ZmHOX2a(1)          <---------ZAT14 ---------HSFB2a(2)    ----------->RAV1(1)        ----------->RAV1(2)          --------->ZAT14   ttccacaaatggttttctcgatgctcaacagaactcttcttctcataccacatcctgacccggaactagtcgcttatcaagttcagtggtacacttacta  19725300                     <-----------GT1              ------>ZmHOX2a(2)            <---------AGP1            <---------ARR11(3)            <---------ARR14(2)            --------->ARR14(2)         <---------HSFB2a(2)                          <-----------GT1         --------->HSFB2a(2)                        <---------ICU4                      <---------AtLEC2        <---------LBD16                  <----------DOF2                       --------->ANAC58       ----------->RAV1(2)               --------->TOE2(3)                ----------->HVH21  ----------------->AGL1        <-----------GT1    --------->ICU4   <-----------GT1   <-----------GT1  <-----------------AGL2    <----------DOF2  <---------TOE2(3)----------->GT1  --------->ANAC58   cattgcctcttctggatctacatttactctcttttttcaacttctttaatgtaatttttccatctggttattacatttgacaagctattttcatgtcttc  19725400  Previous    Next  AGI:  At3g53190.1    Description:  pectate lyase family protein. Identical to Probable pectate lyase 12 precursor [Arabidopsis Thaliana] (GB:Q9SCP2;GB:Q8LFH8); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G04310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63009.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 19724906    to: 19728573    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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