Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                ----------->GT1                                        ----------->GT1              <---------ALFIN1--------->GLK1(2)                                       --------->ANAC58             --------->MYB46(3)  --------->YAB1                       --------->ANAC46           <-----------GT1    <---------ARR11(3) ------>DOF2                           --------->ANAC58        --------->bZIP60(2)   --------->ARR11(3) -AtSPL8 <----------DOF2   <---------------------WRI1          <---------CCA1(2)    --------->RVE1(1)   aaagtcataagctttttaaaaaaacttatgaagaatattacaaggaaaaaacaagagtttgggccatatcaccaccatggaagtaaaaatctctacttgg  19698300                                                                                             --------                        <---------ANAC58        <-------GAMYB                               ---------     <---------------AGL15        <-----------GT1<---------MYB52(1)              ---------->DOF2     --------------->AGL15  <----------DOF2    <---------MYB46(3)               --------->AHL20(2) --------->ANAC46       <---------ANAC58       <-----------RAV1(1)          --------->AHL20(2)   tacaagacccaaattagtagaaaatggcttcttttgtaacaaatttggactgttgggccatattgttttgtttatacataaattaaagcccaaaatgatt  19698400                                                                                                  <--                                                                                               <-----                                                                                              -------                                                                                             --------                                                                                             <-------             --------->YAB1         -------->ATHB1                                           <-------          --------->HSFB2a(2)--------->AHL20(2)    <---------MYB52(1)                        --------   <------MYB46(1)          --------->AHL20(2)   <------MYB83                                --------   <------MYB83       ------>MYB83  --------->ATHB12                                         --------  <---------MYB46(3)<---------MYB59 <---------ICU4<-------GAMYB                              <-------  --------->MYB59<-----------GT1   <---------YAB1<---------DEAR3(2)        --------->YAB1   <-------- ->ATHB12 <---------HSFB2a(2)<---------AHL20(2)  <------MYB46(1)       <---------ANAC58     <-------- >ICU4<---------ANAC46------>MYB46(1)         ------------>MYB.PH3(1)  <---------ANAC58     ---------   tagttgggtcgtctagaataaaccgaactattaaaaaatcattggtagagtcggttatgttatttcaattgtggctagcatgaaattaagttcaattatt  19698500 ---------GT1 ----YAB1 -->AHL20(1) >ATHB1 -HAHB4 --ICU4 ->ATHB51 ->YAB1 ->AHL20(2) --AHL20(2)                          <---------MYB59 -ATHB51          <-------TEIL   <---------SPL7 -ATHB12<---------YAB1       <---------ANAC46                 ----------->GT1           ----------->RAV1(1) >ICU4<-----------GT1 <---------GLK1(2)   ----------->GT1   ---------->DOF2--------->YAB1   ttacatttttactattaagcttcatattcttacgtcgaaccgaattgaaattagagaaaacagaaagataaaccgaattataaacaaaaacaacatagac  19698600                     <---------ANAC46                     <---------ANAC58                  <---------CCA1(2)                <---------REM1(1)               <-------MYC2               ------->MYC2               <-------MYC3               ------->MYC3              --------->TGA1a              <---------ANAC55(2)              --------->ANAC55(2)                                                      ------------>CBF              <---------O2                                                --------->TOE2(3)              <---------TGA1a                                             <-----------HVH21              --------->O2<---------AHL20(2)                              <-----------TGA1              <---------ANAC58                                           --------->ANAC46              <---------ANAC58                                          <---------TOE2(3)              <---------ANAC46 <-----------GT1    <---------ICU4       <---------DOF5.7(2)    <------MYB83--------->ALFIN1  --------->TOE2(3)          --------->At4g35610   <---------ICU4    <---------DEAR3(2)    --------->AHL20(2)   --------------->AGL15   <-----------GT1<-----------GT1    <------MYB46(1)  <---------ANAC58----------->GT1 <-----------GT1   --------->MYB52(1)    --------    ----------->GT1 <---------At4g35610     <-----------GT1  --------->ZAT2       --------->ICU4<----   tagagtcggtttaatcacgtgtagcttataaattaacatcagtaaatttccatttttactagcagcttgaaattaacgtcagtgatttttacaatccttg  19698700                                                <----------DOF2                  *TSS                          <---------DAG2         ---------->DOF2                     <-----------GT1    --------->At4g35610         --------->AHL20(2)                                       <---------ATHB12 ->TOE2(3)    ---------->DOF2   <---------AHL20(2)                   ------>NtERF2 --------->ZAT6 -----WRKY18(1)--------->DAG2  <---------AHL20(2)      --------->LBD16        --------->YAB1   actagtagcttcaaagtaaagcagcaactcttatttatttggggttttcactttttccccaaaattgtctccgacttcaaacataacacaaatcgttcat  19698800                                                                           --------->ANAC58                                                                           --------->ANAC46                                                                           --------->ANAC58                                                                  <---------ZAT2                                                                  <---------At4g35610                                                            --------->GLK1(2)                                                            <-----------ARR10   --------->ATHB12                              --------->HSFB2a(2)          <---------GLK1(2)   <---------ATHB12                              <---------HSFB2a(2)       --------->YAB1<----------DOF2               -                  <---------GLK1(2)       --------->HSFB2a(1)     --------->At4g35610    ----------->GT1   cgtcttccttctctctctctgattctctcattcgcgaatttcaaaggttctacttctctcagaatctcagctctttcacgaatcaatggagaagttaaga  19698900                                                  --------->ARR14(1)                                                  --------->CCA1(2)                                                 --------->ARR11(1)                                                 <---------ARR14(2)       <---------MYB46(3)                                                 --------->ARR14(2)      <---------MYB52(1)                                                <------NtERF2           <-------GAMYB                            <-----------RAV1(1)<---------MYB46(3)   <---------ALFIN1                     <------MYB83             <---------ANAC58     --------->MYB46(3)                     <------MYB46(1)          <---------ANAC46<---------HSFC1(2)                   <-                   <---------WOX13(1)         <---------ANAC58--------->HSFB2a(1)                  ==                 --------->ATHB12            <---------LBD16  <---------HSFB2a(1)              <-----                <---------AHL20(2)     <---------At4g35610    --------->HSFC1(2)              ------- ------>TEIL    <---------YAB1       --------->REM1(1)      ---------->DOF2         --------->At4g35610   tgaatttgggtttctaatttgattggttttttgttggctacagctatggcggatacggtagagaaagttcccaccgttgttgagtcatcttcatcatcca  19699000                                    --------->O2                                    <---------O2                                    --------->ANAC46                                    <---------TGA1a                                    --------->TGA1a                                    ========================bZIP_DOF                    ------>NtERF2   ----------->HVH21                    --------->HSFB2a(2)                    <---------HSFB2a(2)                   --------->DEAR3(1)                                               >>>>>>>>>TBF1                  <------NtERF2  --------->ZAT18  --------->DAG2            --------->ICU4 ------GAMYB    <----------ID1   --------->DEAR3(1)                       --------->YAB1            - =============================================MYC_MYB--------->ALFIN1    --------->ICU4  --------->At4g35610 ----ALFIN1 ---------->DOF2    --------->PCF2    ---------->DOF2         <---------YAB1 --------->GLK1(2) -->MYB46(3)==================================bZIP_DOF    <---------DEAR3(1)<---------YAB1          <   ccgttgaagcatctaatagcgccgagaagactgagcccacgacggagaagaaaaagtggggcgatgttgaagatgatgatgatgaagaagaagctgtatc  19699100                                                               --------->GLK1(2)                                                              --------->ARR14(2)                                                              <---------ARR11(3)                      <------ZmHOX2a(1)                       <---------ARR14(2)                <----------DOF2                               <---------GLK1(2)        --------->ATHB12                             <---------ARR14(2)       <---------AHL20(2)         ----------->RAV1(2)--------->ARR14(2)  ---------->DOF2 -------->At4g35610 <---------TOE1(3)               <------ZmHOX2a(1) --------->TOE2(3) ---------At4g35610 <---------TOE2(3) <---------GLK1(2)----------->RAV1(2)   ggagcttaattcattgagcattaaggaagaagagaaacctgattctattcttgaggaacctgaagattctaacatcaaagctgtattacttcaattccct  19699200  Previous    Next  AGI:  At3g53110.1    Description:  LOS4 (Low expression of osmotically responsive genes 1); ATP-dependent helicase. Identical to DEAD-box ATP-dependent RNA helicase 38 (RH38) [Arabidopsis Thaliana] (GB:Q93ZG7;GB:Q9SCQ0); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G19760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62964.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (In Range:  from: 19698718    to: 19701639    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version