Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               ----------->HVH21                                                           <----------DOF2                                                          ------>ZmHOX2a(2)                                                         <---------YAB1                                                        --------->ARR11(3)                                                        <---------ARR11(3)                                                      <---------ATHB12                                                    ------>MYB46(1)                                                    ------>MYB83 ---->ZmHOX2a(1)                                  ------->GAMYB                       <---------YAB1 ------HVH21                                    --------->ANAC58         <---------ARR11(3) -->DEAR3(1)                                    --------->ANAC58         --------->ARR11(3)       ---   cctgtatttcatagataataaacaaatgagacattgcaactagaaatgacaaccaaatgatctttgacactgaaaaatctcagtctacatgatagaaatg  19672600                                                                           <---------At4g35610                                                                           --------->At4g35610                                              --------->YAB1               <---------ZAT2                                             <---------YAB1                --------->ZAT2                                     <---------TOE2(3)                 <------ZmHOX2a(2)                                    <-----------GT1                   <---------ARR11(3)                                    --------->MYB52(1)                --------->AGP1             ------>MYB46(1)    <---------RVE1(1)                     <---------ARR14(2)             ------>MYB83      <---------ARR11(3)                     --------->ARR14(2) ---->TEIL <---------MYB59     --------->ARR11(3)  <----------DOF2    --------->ARR11(3)        <----   aatcatccatataccaaatacagactaatcacagatattaacgaagtatcatacttttattacttagaaccagatccagctacacagagaccatgaaatt  19672700                  --------->ANAC58                  --------->ANAC58                                                                 --              --------->At5g28300                                                                  --          <---------DOF5.7(2)                                                       ----------->GT1<-          --------->MYB52(1)                                                        <---------ANAC46        <---------MYB52(2)                                                          <---------ZAT6 <-       <---------At4g35610                                                      <---------MYB52(1)<--       --------->At4g35610                                                 ------>ZmHOX2a(1)     ----  --------->ZAT2 --------->DAG2                                          <---------HSFC1(2)   <------  <---------At4g35610                  <---------YAB1                    <---------HSFB2a(1)<--------  <---------ZAT2---------->DOF2  --------->AHL20(2)                      --------->HSFC1(2)--------->ICU4  --------->At4g35610         --------->YAB1                             --------->HSFB2a(1)--------- -------GT1  ------->GAMYB   <---------YAB1                             <------ZmHOX2a(2)  <---------ATHB12   acccagcttagctaacggtaaagcaaaacatatcataaattccgattgaaacaagagtcaatttcagtgaatcgatccttccgatagtgtgaaatcatga  19672800     --------->ZAT6    <---------YAB1  <---------ICU4 <---------YAB1 --------->ICU4 ------->YAB1 ------>ATHB1 -------HAHB4 --------ICU4 -------ATHB12                             <-------TEIL                    <---------ANAC58      ---- --->TEIL                                 --------->CCA1(2)                <---------ANAC55(2)   <--- ---YAB1                                 --------->ARR14(2)                <---------ANAC58   <------ -ICU4                    <-------TEIL   <---------ARR14(2)        --------->CCA1(2)          ------- >YAB1         ----------->GT1     <------ZmHOX2a(1)            ----------->ARR10           <xxxxxxxx   atcattatcactaggcgatgttaatagattcaacacaggaacagatacagagagagagagagaggtgagatttgattacttgagaaccatggtagtagct  19672900                                          --------->LBD16                                         --------->LBD16                                    --------->ZAT2                                    --------->ATERF1(1)                                    <---------At4g35610                                    <---------ZAT2                                    --------->At4g35610        <<<<<<<<<TBF1              <---------ATERF1(1)  ------>ZmHOX2a(1)        --------->ZAT2<---------HSFB2a(2) <---------ALFIN1          <---------At4g35610 --------->ZAT6 ----->At4g35610           <---------ZAT2--------->HSFB2a(2) ------At4g35610          ------>ZmHOX2a(1) <---------ARR14(2) ---At4g35610          ------>ZmHOX2a(1)<---------LBD16        --------->TOE2(3) -->At4g35610 ---------->ID1  <-----------RAV1(2)  --------->ZAT14 xxxxxxxxxxsmallRNA(fl3)----------->RAV1(2) --------->ARR14(2) --------->TOE1(3)   gctcctcttcttcttcgtcttcttcctcctgctcaggctgctcccggaaacactagactagaaaaccctaattctctcgatacttatatataagagactt  19673000                                             <---------ALFIN1                                           ----------->RAV1(1)                                           <---------ALFIN1                                        --------->PCF2                                   <---------YAB1       --------->MYB46(3)       <---------YAB1         <---------ZAT18                     --------->AHL20(2)       <---------MYB55(2)       <---------AHL20(2)     --------->ZAT18                     --------->AHL20(1)      --------->ANAC58       --------->AHL20(1)   ---------->DOF2                          <---------AHL20(2)      --------->ANAC46       <---------AHL20(1) <----------DOF2                           <---------AHL20(2)      --------->ANAC58      <---------AHL20(2)  <---------DAG2                            --------->AHL20(2)    <-----------GT1 <---------ANAC46   <-----------TCP11(1)                            --------->ATHB51   *TSS------------>CBF   <-----------TBP <---------ZAT18                              <---------ICU4   cacatttcacccaatgccattttcgtctatatatattattctggcccacactttaagcccactaaataggcccatcacaaataggcccataattttatta  19673100                          --------->ZAT2                          <---------ZAT2                          <---------At4g35610                          --------->At4g35610                       --------->TGA2(2)                      <-----------HVH21                     --------->bZIP60(1)                     <---------O2                     --------->TGA2(1)                     <---------TGA2(1)                     --------->O2      --------->ATHB51                     <---------TGA1a   <--------ATHB1              ------>NtERF2                     <---------bZIP60(1)  <---------AHL20(2)      --------->DEAR3(1)                    <-----------STF1   <---------ICU4             ----------->HVH21                    ----------->STF1   --------->YAB1            <------NtERF2                  ----------->TGA1     --------->AHL20(2)        --------->SPL7               --------->ICU4          <---------AHL20(1)        --------->ATERF1(1)               <---------ZAT6    ------>ZmHOX2a(1)              ------>NtERF2                       -      <---------AHL20(2)<-----------bZIP910(2)                  <---------ATERF1(1)                 -    <---------AHL20(2)<-----------TGA1<---------ATHB51         --------->DEAR3(1)           ------->TEIL   <---------AHL20(1)<---------ANAC55(2)  --------->AHL20(2)   ----------->HVH21     ------------>CBF   <---------ARR11(3)--------->TGA1a  <---------ATHB12        --------->DEAR3(2)    <-----------HVH21  <---------CCA1(2)<---------TGA2(2)  --------->ICU4  <-----------GT1        <------ZmHOX2a(1)<------   gcccatatatttttgtagtgatgacgtcagctctcctccaataattttttgattttttcccatagccgacgacggtagaggaaacttgtcaatggaccta  19673200                 ---------->DOF2             <---------ANAC46             <---------ANAC58                                           --------->LBD16             <---------ANAC58                                          <---------HSFB2a(2)        <---------ANAC58                                               <---------HSFC1(1)        <---------ANAC46                                          <---------HSFC1(2)                <        <---------bZIP60(2)                                       --------->HSFC1(2)                -        <---------O2                                        --------->ZAT14                         <        <---------ANAC58--------->At4g35610                 <---------ZAT18                         -     ----------->TGA1   <---------At4g35610                 <---------ZAT14             ---------->DOF2     ----------->HVH21<--------P                           *TSS  --------->ANAC58     --------->YAB1- ----------->MYB.PH3(1)<-------TEIL              <---------At4g35610   --------->HSFB2a(2)         <- -------->MYB52(1) --------->DAG2                --------->At4g35610   --------->HSFC1(1)          -- ---MYB59    <---------ANAC55(2)            --------->At4g35610  --------->ANAC58    <---------ATHB12   aaaaacggtgacgtttcgtaaaaggtagatgaaagtttgaacaagtagctaagctctctctctgcacaagcttccagaaaaaatcaaatcaaaagagaga  19673300                                --------->KAN4(2)                               <---------GLK1(1)                               <----------TaMYB80                               --------->GLK1(1)                               <---------KAN4(1)                               --------->HSFB2a(1)                               <---------HSFB2a(1)                               --------->KAN4(1)                              <---------ARR14(2)                              --------->ARR14(2)                              <---------ARR11(3)                                               <-----     --------->ANAC46         ---------->TaMYB80                                              ------- <------ZmHOX2a(2)          --------->LBD16                                      --------------->AGL15 --------->CCA1(2)        <---------LBD16                                        <---------------AGL15 ---------ARR14(2)        <------NtERF2                                         <-----------------AGL2 -------->ARR14(2)        --------->ATERF1(1)                                   <-----------------AGL3 ---------ARR11(3)       ------>NtERF2                                        <-----------GT1<------- -------->AGP1           <---------ATERF1(1)                        <---------ANAC46         <------- -------->ARR11(3)      --------->DEAR3(1)                          <---------ANAC55(1)     --------- --------GLK1(1)        <---------DEAR3(1)      --------->At4g35610 <---------ANAC58        <------NtERF2 ------->GLK1(1)      <-----------HVH21         <---------At4g35610 <---------ANAC58      <---------DEAR3(1)   gagatccacaaaattggattgaatcgtcgccggatattccaagagtagagagcttagtttgtctcgcgttgcgtctagatttactgaatatggaggcgga  19673400                                                                  <---------ARR14(2)                                                                 --------->At5g28300                                                                 <-------GAMYB                                                                <---------MYB46(3)                                                                <---------DEAR3(2)                                                               <---------DEAR3(1)                                                               <---------ANAC46                                                              <------NtERF2                                                              ------>NtERF2                             <---------DEAR3(1)              ------------>AtMYB77                          --------->ANAC46                  <---------DEAR3(1)                          ================================================MYC_MYB                          <---------O2                     ------>NtERF2            <---------DEAR3(1)                          --------->TGA1a                 <---------O2  --------->ANAC58                          <---------TGA1a                 --------->O2<---------ALFIN1                ----------->GT1                           ===============MYC_MYB    ------>ZmHOX2a(2)                <---------MYB46(3)                        <---------bZIP60(2)      <------ZmHOX2a(2)               <---------DEAR3(1)                         --------->TGA1a    <---------MYB52(1) --------->ALFIN1         --------->O2                    <---------TGA1a   <---------SPL7 -NtERF2       --------->ALFIN1            <-------TEIL   ================MYC_MYB <---------ARR14(2) -->LBD16----------->HVH21===============================================MYC_MYB  --------->ARR14(2) --DEAR3(1)    <---------AtMYB61  <------ZmHOX2a(1)    ----------->HVH21--------->ANAC46 --ANAC46--------->DEAR3(1)<-----------HVH21           --------->DEAR3(1)------>NtERF2 ----------->HVH21 >ATERF1(1) <---------DEAR3(1) <------NtERF2          --------->DEAR3(2)--------->ANAC58        -----   gaagtggaacagcgacggtggtgaatacacgtcggaggacgaaggtacagaagattaccgacgcggcggttaccacgccgttcggatcggtgactcattc  19673500  Previous    Next  AGI:  At3g53020.1    Description:  STV1 (SHORT VALVE1); structural constituent of ribosome. Identical to 60S ribosomal protein L24-2 (RPL24B) [Arabidopsis Thaliana] (GB:P38666;GB:Q33DV0;GB:Q56Z81;GB:Q9LF90); similar to RPL24A (RIBOSOMAL PROTEIN L24), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G36620.1); similar to Ribosomal protein L24E [Medicago truncatula] (GB:ABE80118.1); contains InterPro domain Ribosomal protein L24e; (InterPro:IPR000988) Range:  from: 19671495    to: 19673003    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g53030.1    Description:  SRPK4 (SER/ARG-RICH PROTEIN KINASE 4); kinase/ protein kinase. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G22840.1); similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G44850.1); similar to SRPK4 [Oryza sativa] (GB:AAL58968.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16006.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16716.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domai Range:  from: 19673259    to: 19675483    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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