Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       ----------->HVH21   <---------ANAC58   <---------ANAC46   <---------ANAC58   ----------------->AGL1                               <---------ANAC58 ------GAMYB                                            <---------ANAC58 --------ANAC58                                      <---------WOX13(1) --------ANAC58             <---------LBD16        --------->ATHB12 ----MYB46(1)          <---------------AGL15      <---------YAB1 ----MYB83             <----------DOF2          <----------DOF2                                  <--- -------MYB46(3)     --------->At4g35610      <---------ZAT2                                <-------- ------AtMYB61     --------->MYB46(3)         <---------At4g35610                           --------- ----->MYB59 <---------ARR14(2)               --------->ZAT2                          ---------->DOF2 >DAG2       --------->ARR14(2)               --------->At4g35610                   <---------At4g35610 >DOF2      <------ZmHOX2a(1)           <-----------ARR10  --------->ATHB12         --------->At4g35610   tggttgcctgaagaggattcaacagctatatggggataagagtgtctcagctttgattgcttcatttgattttgtttatatttttcagcaaagacccttc  19656200                                                                                          <---------AHL20(2)                                                                                          --------->YAB1                                                                                          <---------AHL20(1)                                                                                          <---------ICU4                                                                                          --------->AHL20(2)                                                           <---------ICU4                 <--------ATHB1                                                           --------->ATHB12              <---------ATHB51                                                          <---------YAB1              <---------YAB1                                                 <----------DOF2     <---------AHL20(2)--------->YAB1 -------DOF2             <-----------GT1   <-----------GT1--------->ICU4            ----------->GT1 -HSFC1(2)          <---------YAB1       <----------DOF2--------->YAB1              --------->YAB1 >HSFC1(2) ---------->DOF2            <---------ARR11(3)<---------ICU4 <---------AHL20(2)--------->ICU4   tttcttcaattcccaaagaattcttatttacaggtatcaatttctttacatcttttgatcatcattgttatattttttcttctaaattgtaataattttg  19656300                                            <---------------AtSPL8                                            --------------->AtSPL8                                        --------->AHL20(2)             <---------------AtSPL8                                    ---------->DOF2           ------->TEIL--------->MYB52(1)                                  <---------AHL20(2)------>MYB46(1)   ---------->DOF2                                 --------->AHL20(2) ------>MYB83 --------->AHL20(2)                             <---------AHL20(2)   <---------MYB59<---------AHL20(2)   gaatagaactgtttagttttttagtctctattgaatttaaaagtaaatggtaccaaatagaatgcatttaaataaagaacgaagaagattatttgggatt  19656400                                                                                             --------                                                                                         <-------TEIL                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                     <-------TEIL                                                                                   <-------MYC2     -                                                                                   <-------MYC3     <                                   --------------->AtSPL8--------->ANAC46          ------->MYC3     -              <---------YAB1      <---------ANAC46--------------->AtSPL8           ------->MYC2     -     --------->DAG2 --------->ANAC55(2)    <----------DOF2                         ------->MYC4     <    ---------->DOF2 <---------ANAC55(2)------->TEIL   <---------ZAT18          ------->TEIL <--------   aaaaaaaaaagttgttttgattacatatcgtttgtaatgtgtaccctttctatttgtacacattacaaaatgtgaagtatgaacatgtgcgttcatgagt  19656500                                                                                     <------------CBF                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)  ------>ZmHOX2a(2)                                                                --------->AHL20(1) <------ZmHOX2a(2)            <---------ANAC58                                    <---------AHL20(2) --------->CCA1(2)            <---------ANAC58                                    --------->AHL20(2) ->ATHB12                     <---------ANAC46                                --------->AHL20(2) -------->ARR14(2)            <---------ANAC55(2)                          <---------ICU4 ---------ARR14(2)    <---------AHL20(2)    <---------YAB1                --------->ICU4 -------->ARR11(3)   --------->AHL20(2) <-----------GT1                   <---------ATHB51<---------WOX13(1) -------->AGP1   <---------YAB1    --------->ATHB12                       --------->AHL20(2) ---------ARR11(3)  <---------YAB1<---------YAB1  <------ZmHOX2a(1)       <---------AHL20(2)--------- -YAB1  <----------DOF2    <<<<<<<<<MYB98  <----------DOF2    <---------YAB1  <---------AHL20(2)   gagatctactctttggtttcttattatatgttacttatgatttatctttataggagtttgacttatccttgttgaaataattaaaaaaattgaatgattt  19656600                                                                         <---------ARR14(2)                                                                         --------->ARR14(2)                                                                         --------->GLK1(2)                                                                        <---------GLK1(2)                                                                   ----------->RAV1(1)                                                                  --------->ANAC46                                                               <---------ZAT18                   ----------->GT1                             --------->ZAT14                 <---------ANAC58                              --------->ZAT18                 <---------ANAC58                              <---------ZAT14      <---------ANAC58                                   <-----------RAV1(1)      <---------ANAC58     --------->TOE1(3)            ------->TEIL  ------->GAMYB      <---------ANAC46     --------->TOE2(3)--------->ANAC46<---------ANAC46--------->WOX13(1) >ATHB12         <-------GAMYB        ------->TEIL   <---------YAB1--------->MYB52(1)              --   gctatgtagggtgtttttgggttgtgaaacgttagagatgaatttcacagaagctatgaatgttgtgcacaacagaatccatcaacttgaaccagagaat  19656700                                                                                       <---------ANAC58                                                                                       <---------ANAC58                                                                                  ----------->HVH21                                                                                 <-------------------                                                                              <-------TEIL                                                         <---------ANAC55(2) --------->GLK1(2)                                                  --------->bZIP60(1)        --------->ARR14(1)                                                  <---------bZIP60(1)       <---------GLK1(2)           <---------TOE2(2)                   ----------->HVH21            --------->ARR14(2)       <------ZmHOX2a(2)                      <-----------HVH21             --------->ARR11(1)       <---------YAB1                    --------->MYB46(3)               ----------->ARR10      --------->ARR11(3)           <------ZmHOX2a(2)     --------->ANAC55(2)<---------ARR14(2)      <---------ARR11(3)          --------->ARR11(3)    <-------TEIL    <-----------------AGL1 ------ ----->TEIL<---------TOE1(2)      <---------ARR11(3)<---------YAB1      ----------------->AGL1<------   gcatcgaagatcataggttatctcttgttgatgcaagatcaaaacgaccgtgacatgatacgtctcgcattctgtccagattcggtgatgcgttctatga  19656800                                                                                    --------->YAB1                                                                                    <---------ICU4                                                                                    <--------HAHB4                                                                                   <------ZmHOX2a(2)                                                                         <---------MYB52(1)                                                                       --------->ANAC55(2)                                                                       <---------ANAC55(2)    ----------->GT1                                                    ----------->GT1         <----- --WRI1                                                             <---------ARR14(2)      --------- --->YAB1                            <---------YAB1                 --------->ARR14(2)<---------YAB1 ---YAB1                       <---------YAB1        <---------At4g35610--------->LBD16   <---------LBD16   tcaactgtgttaaatgtgaattggctaaaaactctcattacaataacatcccttcttctgatcacattcaaatccgtaaattcggatcattatccggttc  19656900                                                                                              -------                                                                                         <---------ICU4                                                                                         --------->ATHB12                                                                                        <---------YAB1      ------>MYB46(1)                   <-----------------AGL1                          --------->ICU4      ------>MYB83                <---------------------WRI1                          --------->YAB1 --TEIL                          ------>ZmHOX2a(1)                                   <-------TEIL >LBD16    <----------DOF2    ------>ZmHOX2a(1)                               --------->CCA1(2)   atcaaaccaatctcttttggtttctgcctctcctccttcggttctctctatgggaacaagtttttgggagaatacaaacgatatggattcatcattgaaa  19657000                                  ----------->HVH21                             --------->GLK1(2)                            --------->ARR14(2)                            <---------ARR14(2)                           <------ZmHOX2a(1)                                             <----------DOF2      --------------->AtSPL3<---------GLK1(2)                                          ---------->ID1 --->DOF2                <---------TOE2(3)  ------>ZmHOX2a(1)          --------->At4g35610     ------   gacaatgttcagtacttcttggattttgaggattctgtgaccagtcctgaattctcaactagtttcttctctcagaagaaacagagtttgtctttaagaa  19657100  Previous    Next  AGI:  At3g52980.1    Description:  RNA recognition motif (RRM)-containing protein. similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G05160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41199.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504) Range:  from: 19656638    to: 19657940    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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