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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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               ------>ZmHOX2a(2)
              --------->CCA1(2)
              --------->At4g35610
              <------ZmHOX2a(2)
             --------->ARR11(3)
             <---------ARR14(2)
             --------->ARR14(2)                                                                -----
             <---------ARR11(3)                                                           <---------AtLEC2
             <---------AGP1                                                             <---------HSFB2a(2)
             --------->AGP1                                                            ------>ZmHOX2a(2)
            --------->GLK1(1)                                                        <---------AGP1
            <---------GLK1(1)                                                        --------->ARR11(3)
 ------>ZmHOX2a(2)                                                              <---------ARR14(2)
<------ZmHOX2a(2)                              ---------->DOF2                  --------->ARR14(2)
-------->ARR11(3)                       --------->ATHB12                        <---------GLK1(2)
---------ARR14(2)                     <---------WOX13(1)                      --------->LBD16  <----
---------ARR11(3)  ------->TEIL     --------->ATHB12       --------->GLK1(2) <---------HSFB2a(2)
-------->ARR14(2) <---------CCA1(2)<---------YAB1  <------ZmHOX2a(1)         --------->HSFB2a(2)
 
aagatcggaccagagagatctgaatctttgtgaacagtctgattgattcgaaaaggattgagaatcgatctagttttcttccagatttgatctggatgga  19565400
                                                                                                 ---
                                                                                                 ---
                                                                                                 <--
                                                                                                ----
                                                                                                ----
                                                                                                <---
                                                                                                ----
                                                                                                ----
                                                                                               -----
                                                                                               -----
                                                                                               -----
                                                                                               <----
                                                                                               -----
                                                                                 --------->LBD16----
                                                                                <---------ANAC46----
                                                                                <---------ANAC58----
                                                                                <---------ANAC58----
                                                                            --------->KAN4(2) <-----
                                                                           <---------MYB46(3) ------
                                                                   ---------->DOF2        --------->PCF2
                                                                <---------At4g35610       --------->PCF5
                                     --------->At4g35610        --------->At4g35610      <----------
                                     <---------At4g35610      <-----------RAV1(2)<-----------HVH21<-
                           --------->TOE2(3)                 <-------TEIL  <---------KAN4(1)--------
---->ARR14(2)         ------>ZmHOX2a(1)                ---------->DOF2     --------->HSFB2a(1)------
-----ARR14(2)---------->DOF2------>ZmHOX2a(1)   ------>ZmHOX2a(1) <---------REM1(1)    --------->HSFB2a(1)
 
taccgagttcgtcgagtaaaggctcctcatcctcaaacgaagcagagactcctctaccgaaagatgcagatgaagcgattgttccgtcgaatggtcccgc  19565500
             <---------ANAC46
            --------->ATERF1(1)
            <---------LBD16
            <------NtERF2
           <---------ERF1
           <---------RAP2.3(1)
           <---------RAP2.6(1)                                              <------MYB46(1)
           <---------ATERF1(1)                                              <------MYB83
           <---------DEAR4(2)                                              --------->MYB46(2)
           ------>NtERF2                                                   --------->MYB111(1)
          <---------RAP2.3(3)                                              --------->MYB111(2)
          --------->DEAR3(1)                                               <---------MYB46(3)
          <---------ATERF1(2)                                             <--------P
          <---------RAP2.6(2)                                             <---------MYB55(1)
--->NtERF2<---------RAP2.3(2)                                             <---------ANAC46
------>LBD16<---------At4g35610                                         <---------MYB46(3)
-------RAP2.6(3)                                                        --------->MYB55(2)
----->RAP2.6(2)                                                         --------->MYB111(2)
----->RRTF1(2)                                                         <---------AtMYB61
------ATERF1(2)                                                   ===============MYC_MYB
----->DEAR3(1)                                                    =================MYC_MYB
----->ATERF1(2)   ------>ZmHOX2a(2)                               <---------ANAC58
---->RAP2.3(1)   <------ZmHOX2a(2)                                <---------TGA1a
---->ATERF1(1)  <---------ARR14(2)                                <---------O2
---->RAP2.6(3)<---------ATERF1(1)                                 <---------bZIP60(2)
--NtERF2  <---------DREB2C(2)                                     --------->O2
---->ERF1 <---------DEAR3(1)                                      <---------ANAC46              <---
----->RAP2.3(2) --------->ARR14(2)                             ----------->HVH21             -------
----->DREB2C(2)<------NtERF2                                  <---------WOX13(1)             <------
----->RAP2.3(3)--------->ATERF1(1)                           <---------ARR14(2)         --------->ALFIN1
----->RRTF1(3)<---------MYB46(3)                             --------->ARR14(2)         <---------ANAC46
----ATERF1(1)<---------DEAR3(1)                             <------ZmHOX2a(1)       --------->At4g35610
--->LBD16 <---------RRTF1(2)                          <---------At4g35610<-------GAMYB--------->ALFIN1
-HVH21    <---------RRTF1(3)                       =========================bZIP_DOF--------->ZAT2
-----NtERF2<---------ORA47(2)                     <---------REM1(1) --------->ALFIN1<---------At4g35610
->ATERF1(1)<---------RRTF1(1)       ---------->DOF2---------->DOF2<---------ANAC58<------ZmHOX2a(1)<
>NtERF2  <---------ABI4(1)          ========================================bZIP_DOF<---------ZAT2<-
 
cggcattgaaacggcggcggatccgatttcaaatggaatgaaagggattgaagatgaagcggaggattgacgtggtggttggtaaggagctgtgggaact  19565600
                          <---------At4g35610
                        <------NtERF2                                              --------->HSFB2a(2)
                     <---------LBD16                                               <---------HSFB2a(2)
                     <---------ANAC46                                            ===================
                    <------NtERF2                                         <-----------TGA1
   <---------At4g35610 <------NtERF2                                   ------>ZmHOX2a(1)
   --------->At4g35610 --------->LBD16            --------->MYB52(1)   =============================
 <<<<<<<<<MYB2     <---------MYB46(3)           --------->MYB46(3) <---------ARR11(3)
<-------GAMYB      ------>NtERF2         <------NtERF2             --------->GLK1(2)
------DEAR3(1)    --------->ALFIN1      <---------MYB46(3)         --------->ARR11(3)              <
-->GLK1(1)        ----------->HVH21    --------->ALFIN1            <---------ARR14(2)     --------->TOE2(3)
---GLK1(1)     <---------DEAR3(1)      <---------ANAC46            --------->ARR14(2) <---------GLK1(2)
---------DEAR3(1)--------->ATERF1(1)<-----------RAV1(1)       ----------->GT1    ------>ZmHOX2a(1) <
-----NtERF2   <---------LBD16   ------>ZmHOX2a(2) -------->P ----------->GT1     ===================
 
cggcgttgctgaacatttgcggtggccggagatgatccactggtggggaaaacaaccggtggaattggaaaatccttcgtcatcctctagaatccctaat  19565700
   --------->HSFB2a(2)
  ------>ZmHOX2a(2)
 <------ZmHOX2a(2)
 --------->GLK1(1)
<---------ARR11(3)
--------->ARR11(3)
<---------ARR14(2)
--------->ARR14(2)                                                      --------->ANAC46
<---------AGP1                                                        <-----------RAV1(2)
--------->AGP1                                                  <---------HSFB2a(2)--------->ANAC58
=========HOX2a_HOX2a                                      --------->AHL20(2)       --------->ANAC58
========HOX2a_HOX2a                                 ----------->GT1----------->HVH21        <-------
---------CCA1(2)                          <---------GLK1(1)<---------ICU4  ------>NtERF2 *TSS
---------At4g35610                  --------->ARR14(2)    <---------AHL20(2)       --------->ANAC46
========HOX2a_HOX2a<---------ZAT6   <---------ARR14(2)    <---------ATHB51 <---------ATERF1(1)
 
tcagatctcgaatttgaagttagtgttttctctcaatcggatttgatttcagaaattgaaaataattccagtaacaggcgactactacgcattcttcgtg  19565800
 <---------ARR14(2)                            <---------TOE2(3)
 <-----------ARR10                            --------->YAB1
 <---------ARR11(1)                           <---------ICU4
 <---------TOE1(2)                        --------->AHL20(2)
 --------->ARR14(2)                       <---------AHL20(2)
 ------->TEIL<---------ANAC55(2)   ----------->GT1
<---------ARR14(1)               <--------P--------->YAB1
<---------CCA1(2)        <----------DOF2 --------->AHL20(2)         <----------DOF2     ---------->ID1
--ANAC46     --------->ANAC55(2)<---------MYB52(1)        <---------ANAC46      <---------MYB52(1)--
 
ttcgtatcttcgtgatatgtgataagggcattttcggtaagtgaattaataatgttttgggccgtataaggctttatcagcccattagtttgtagttttg  19565900
                                <---------TGA1a                               <---------AHL20(2)
                                <---------O2                                 --------->AHL20(2)
                                --------->O2                                 <---------AHL20(2)
                                --------->TGA1a                        ----------->GT1
                                ===============MYC_MYB                 --------->YAB1
                              <---------ALFIN1                        <---------TOE2(3)
                           --------->PCF2                           -------->HAHB4
                    ------------>CBF                                <---------ICU4
   <----------DOF2--------->ANAC58       ----------->GT1           --------->ICU4
   =======================================bZIP_DOF    <-----------GT1 <---------YAB1               <
------->MYB46(3)  --------->ANAC58     <-------GAMYB  --------->ZAT6--------->YAB1                 -
 
aacagcctttgctacacaaacaagtcaatagccccacttgtgagttgtgaatagttttcactactgactaattatcgtaattttataagttattaggctc  19566000
                                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                    xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                    ----------->HVH21
                                                   xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                   xxxxxxxxxxxxxxxx>smallRNA(le3)
                                                   <-----------HVH21
                                                   xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                   xxxxxxxxxxxxxxxx>smallRNA(s)
                                                   xxxxxxxxxxxxxxxx>smallRNA(i)
                                                   xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                   xxxxxxxxxxxxxxx>smallRNA(le3)
                                                   xxxxxxxxxxxxxxx>smallRNA(si3)
                                                  xxxxxxxxxxxxxxx>smallRNA(si3)
                                                  xxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                  xxxxxxxxxxxxxxxx>smallRNA(le3)
                                          <-----------HVH21
                                          xxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                         xxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                        xxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                        xxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                       ----------->RAV1(2)
                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                      --------->LBD16xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                     xxxxxxxxxxxxxxxx>smallRNA(s)
                                     --------->ANAC46xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                    <---------LBD16xxxxxxxxxxxxxxxx>smallRNA(si3)
                                    xxxxxxxxxxxxxxxx>smallRNA(s)
                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                 xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                 xxxxxxxxxxxxxxxxx>smallRNA(si3)
                                xxxxxxxxxxxxxxxx>smallRNA(i)
                                xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                              --------->ICU4      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                             xxxxxxxxxxxxxxxx>smallRNA(se3)
                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                             xxxxxxxxxxxxxxxx>smallRNA(s)
                             xxxxxxxxxxxxxxxx>smallRNA(i)
                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                            xxxxxxxxxxxxxxxxx>smallRNA(le3)
                            xxxxxxxxxxxxxxxxx>smallRNA(fl3)
                            xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                            xxxxxxxxxxxxxxxx>smallRNA(fl3)
                           <--------Pxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                           =============================MYC_MYB
                         xxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                         xxxxxxxxxxxxxxxxx>smallRNA(fl3)
                         xxxxxxxxxxxxxxxx>smallRNA(fl3)
                         xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                         xxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                         xxxxxxxxxxxxxxxx>smallRNA(si3)
                         xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                         xxxxxxxxxxxxxxxxxx>smallRNA(si3)
                         xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                        xxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                        xxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                        <---------ZAT6------>NtERF2xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                        xxxxxxxxxxxxxxxxx>smallRNA(si3)
                        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                       xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                       xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                       xxxxxxxxxxxxxxxxx>smallRNA(si3)
                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                       xxxxxxxxxxxxxxxxxx>smallRNA(si3)
                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                      xxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                      xxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                     xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                     xxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                    --------->ZAT14xxxxxxxxxxxxxxxx>smallRNA(s)
                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
                    <---------ZAT14xxxxxxxxxxxxxxxxxx>smallRNA(le3)
                   xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                  xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->LBD16
                xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              --------->ANAC46
                xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s)
               xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              --------->LBD16
               xxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxx>smallRNA(se3)
               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
               xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               --------->ANAC46
               xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <---------LBD16
               xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(s)
             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxx>smallRNA(se3)
             xxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxx>smallRNA(le3)
             xxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s)
             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxx>smallRNA(si3)
             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)
             xxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxx>smallRNA(se3)
             xxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------O2           --------->LBD16
             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->TGA1a       xxxxxxxxxxxxxxxx>smallRNA(s)
             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)
             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxx>smallRNA(le3)
             xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------TGA1a      xxxxxxxxxxxxxxxxx>smallRNA(si3)
             xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------LBD16xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
             xxxxxxxxxxxxxxxxxx>smallRNA(fl3) =======================================MYC_MYB
             xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxx>smallRNA(i2)
             xxxxxxxxxxxxxxxx>smallRNA(se3)   --------->O2--------->LBD16 <---------ATERF1(1)
             xxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxx>smallRNA(s)--------->MYB52(1)
             xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxx>smallRNA(le3)<------NtERF2
             xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)
             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->LBD16  <------ZmHOX2a(2)
             xxxxxxxxxxxxxxxx>smallRNA(si3)----------->HVH21 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
             *TSS xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------LBD16------>NtERF2
             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)
             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(se3)
             xxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxx>smallRNA(se3)
             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
             xxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxx>smallRNA(se3) ------->GAMYB
             xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)
      ---------->DOF2xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)
      ==================================================bZIP_DOF --------->ARR14(2)    <---------AHL20(2)
---------ZAT14 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <----
-------->ZAT14xxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------AHL20(2)
 
actgaacaacaaagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgattttttatttttta  19566100
                                                                           --------->ANAC58
                 --------------->AGL15                                     --------->ANAC58
                ----------------->AG                                   --------->ANAC55(1)
                <-----------------AGL2                                 --------->ANAC55(2)
                ----------------->AGL1                                 --------->ANAC58
                <-----------------AG                                   <---------ANAC55(2)
                ----------------->AGL2                                 --------->ANAC46
                <-----------------AGL1                                 --------->ANAC58
                <-----------------AGL3                            <---------ICU4
                ----------------->AGL3                           <---------YAB1
         <---------ZAT18  ---------->DOF2                      --------->YAB1
   --------->YAB1<---------------AGL15    ----------->GT1     --------->ICU4             -----------
-------GT1   ------>ZmHOX2a(1)     --------->YAB1             <---------ATHB12    --------->YAB1
 
aacctatagtagtgtccttaccattttttgaaagtcatttagaatttgtataaattgtaagagcaatgatcaatacgtaagtcatttagaatttgtataa  19566200
                     <---------TOE2(2)
                    <---------------------WRI1
                  <---------ANAC55(2)   <----------DOF2                             --------->YAB1
             <---------ICU4            <----------DOF2                              --------->TOE2(3)
            <---------YAB1            <---------ANAC58                     --------->TOE2(3)
          --------->YAB1              <---------ANAC58                     --------->YAB1        ---
         --------->ICU4        ---------->DOF2       <---------YAB1     --------->WOX13(1)      <---
>GT1     <---------ATHB12 <---------AHL20(2)      <-------TEIL<----------DOF2    <----------DOF2----
 
attgtaagagcaatgatcaatacgtagatttattcaaagttgcctttctgatgttcatgatacttctttttctatcaatcttagctttcttaatttgcaa  19566300
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AGI:  At3g52760.1   
Description:  integral membrane Yip1 family protein. similar to integral membrane Yip1 family protein [Arabidopsis thaliana] (TAIR:AT2G36300.1); similar to unknown [Populus trichocarpa] (GB:ABK93663.1); contains InterPro domain Yip1 domain (InterPro:IPR006977)
Range:  from: 19564657    to: 19565790    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At3g52765.1   
Description:  pre-tRNA. tRNA-Asp (anticodon: GTC)
Range:  from: 19566014    to: 19566085    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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