Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                -----                                                                                                <----              --------->HSFB2a(1)                                                              ------            --------->ARR11(3)                                                      --------->ANAC58            <---------ARR11(3)                                                      --------->ANAC58      --------->YAB1                                   ------>MYB46(1)              --------->ANAC46     <---------YAB1  --------->ANAC46--------->YAB1    ------>MYB83xxxxxxxxxxxxxxxx>smallRNA(i)<----- ----->ANAC46 <---------HSFB2a(1) <----------DOF2    <---------MYB59       <-------GAMYB  ---------->DOF2   cacaactatcataagaacttcccacaaaaccaattcctttcataaactcatcaaacctaatgttccactgtctaggcgattgtttcaggccataaagaaa  19545200                                           --------->ANAC58         --------->ANAC58                  --------->ANAC58         --------->ANAC58              --------->ANAC58            --------->HSFB2a(2)           <--- ---------DOF2                         --------->ANAC46            <---------HSFB2a(2)           <--- ---->ARR11(3)                         --------->ANAC58        <----------DOF2                  <---- -----ARR11(3)                       --------->MYB52(1)  --------->ANAC58               ---------->DOF2 --->GLK1(1)              <-------TEIL<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <------------CBF------ ----GLK1(1)    *TSS ----------->RAV1(1)------->GAMYB    --------->ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(i)   tcttttgagcaacgcattctaaacaacatacattctaaacaacgcaagactcttgaagaaggcaactttctcgacaaatcccattgagtccaaagagaag  19545300                                                                                          <---------AHL20(2)                                                                                          --------->AHL20(2)                                                                                         <---------AHL20(1)                                                                             <---------ICU4                                                                             --------->YAB1        <-        <---------WRKY38(1)                                                 <---------ATHB12     <---  <---------At4g35610      ---------->DOF2                         --------->At5g28300   <---------AHL20(2) ------ANAC58   --------->ZAT18                                   ----------->GT1        --------->AHL20(2) ------ANAC58   <---------ZAT18                                  <---------DEAR3(1)      --------->AHL20(1) -------------------TaNAC69(2)                                   <---------ANAC46    --------->AHL20(2) --->GLK1(2)    <---------ZAT14      <---------GLK1(2)        ----------->HVH21   <---------ANAC55(2)   cttgagatgctcaacgagttcacaagagtgaaagcttcaaattcttatcagcttgtttttgaatatgacggtgaatcaataatcacataaatttaatttt  19545400                            --------->AHL20(1)                            <---------AHL20(1)                            <---------AHL20(2)                            --------->AHL20(2)                          <---------TOE2(3)                        <---------AHL20(2)                        --------->AHL20(2)                               <---------At4g35610                       --------->ICU4                                  <---------WRKY12<---------AHL20(2)           <---------------AGL15                  <---------LBD16 ---------->DOF2      --------->AHL20(2)           --------------->AGL15          --------->AHL20(2) <----------ID1------->GAMYB<---------AHL20(2) --------At4g35610  --------->ICU4        --------->YAB1  ---------->DOF2--------->At4g35610 --------GT1      ----------->GT1     <---------YAB1--------->LBD16    <---------WRKY38(1) --------->AHL20(2)   tagcttataaattctacttgtagtaattaatattttagttacaataaaactctccgggtttaaagaacaaaagtcaactgaaatatgaattaaataaaca  19545500                                  <---------ANAC46                                  <---------ANAC58                         --------->ARR14(2)                         <---------ARR14(2)                             --------->YAB1                        <---------GLK1(1)                      *TSS    <------ZmHOX2a(2)                    --------->AHL20(2)                   --------------------->WRI1                    <---------AHL20(2)                   =====================HOX2a_HOX2a                  --------->YAB1  <---------ANAC58      --------->TOE2(3)      --------->AHL20(2)--------->RVE1(1)  <-----------GT1 ---------->DOF2      <---------AHL20(2)--------->CCA1(1) <-----------GT1------>ZmHOX2a(1)                      <---- --------->AHL20(2) ----------->TBP <---------CCA1(2)   --------->TOE1(3)        <---------CCA1(2)   aaactaaataaaatcagcaaatataaatatccgatttcgtatatttatcttctcttctccttaaatcacttcgatcaaaacttatctctctctatcgtct  19545600                                                       ----------->GT1                                                  ----------->HVH21                                               <---------PCF2                                              <------MYB83  --------->GLK1(2)                                              <------MYB46(1)                                             <---------MYB46(3)                                             --------->MYB55(2)                                             --------->ABI4(2)                         <---------DOF5.7(2)                                       ------->TEIL  <---------LBD16                   --------->MYB52(1)                                       --------->MYB52(1)   <---------ARR11(3)       --------->DOF5.7(2)         <---------AHL20(2) <---------ANAC58<--------P --------->LBD16            <------NtERF2         --------->AHL20(2) <---------ANAC58<---------MYB55(1)                   ------>NtERF2    <---------YAB1       <---------MYB52(1) --------->ALFIN1--------->ARR11(3)  --------->DEAR3(1) ------DOF2            <---------MYB46(3)  <---------MYB52(1)                  --------->DEAR3(2)<---   tttgttttgatttaaatgcctcaagtcgttgcttcagcatgtaccggtgggtctgaccggaaaatctcatgtgaaactctggccgacgataacgaagact  19545700                         --------->ARR14(2)                         <---------ARR11(1)                         <---------ARR14(2)                        <---------CCA1(2)                      --------->ANAC55(2)                 ----------->HVH21                 <---------ETT(1)                ------>ZmHOX2a(2)      <------NtERF2               --------->ARR14(1)     ------>NtERF2               --------->CCA1(2)     --------->DEAR3(1)               <------ZmHOX2a(2)     --------->RAP2.3(2)              --------->ARR14(2)     --------->RAP2.3(3)              <---------ARR11(3)    --------->RAP2.3(1)              --------->ARR11(1)    --------->ATERF1(1)              <---------ARR14(2)   --------->LBD16              --------->ARR11(3)   <---------ATERF1(1)                            --------->ZAT2             <---------HSFB2a(1)   ------>NtERF2           <-----------GT1        --------->At4g35610             --------->HSFB2a(1)  --------->DEAR3(1)   --------->GLK1(2)          <---------ZAT2             --------->GLK1(1)    --------->ANAC46    <---------GLK1(2)      --------->At4g35610 <---            ----------->ARR10    <---------LBD16    --------->LBD16    ---------->DOF2           ----    <---------CCA1(2) <---------ANAC55(2)    <-----------GT1    <----------DOF2   <---------At4g35610 ------ALFIN1<---------GLK1(1) --------->ARR14(2) <---------LBD16    --------->YAB1       -----------   cacctcataactcgaagatccgacccgtatccatctccgccgtcgattttccaccggaatcttactctttatcaaaagaagctcagctcgaatggctaaa  19545800                                                                                                    -                                                                                              <------                                                                                              -------   --------->ANAC58            ---------->DOF2             <---------ARR14(2)                <-------   --------->ANAC58       --------->YAB1                   --------->ARR14(2)      --------->ZAT2   - -------ID1        ---------->DOF2            --------->At4g35610                  <---------At4g35610 ----->ANAC46   --------->ANAC58           <---------At4g35610           --------->TOE1(3)   <------- >GT1           --------->ANAC58--------->DAG2<---------At4g35610        --------->TOE2(3)   <-------   cgacaacgccttcttcgaacgcaaagaatcacaaaaaggaaactcttctgctccaatttcgaatcccaatacaaaccctaattcgagctctcatcgaatc  19545900                                                --------->ALFIN1                                              <---------O2                                              --------->O2                                              --------->ANAC55(2)                                              <---------ANAC58                                              <---------ANAC55(1)                                 ---         ---------->DOF2                      <---------ANAC55(2)                              <-----       --------->YAB1                    --------->At4g35610                                ========= -------->ANAC58                         <---------At4g35610                       --------->ARR14(2) -----ARR10                           --------->LBD16                 ----------->GT1       ========= >TEIL<---------ATHB12            <---------ARR14(2)               --------->MYB52(1)       <------ZmHOX2a(1) --GLK1(2)                <---------GLK1(2)   <---------ANAC46    --------->ARR14(2)    <---------ANAC46 -------->ANAC58         --------->At4g35610  <---------ANAC58    <---------ARR14(2)--------->GLK1(2) --ARR14(1)         --------->YAB1--------->ARR14(2)    --------->ANAC46           <---------ARR14(2) --CCA1(2)         <------ZmHOX2a(2)  --------->At4g35610       ----------->ARR10  <---------GLK1(2)<   tcactcaaatcaaaagcgtcgatcatcagattaccgaaaccgcagaagacgtgtttcaacgaagcgaagaaacggagaaattgcagaatcgcgaggactt  19546000                                                    ------>NtERF2                                              <---------DOF5.7(2)                                            --------->DOF5.7(2)                                           --------->TOE2(3)                                         <---------TOE1(2)                ------>ZmHOX2a(2)        <---------TOE2(2)                ===============================HOX2a_HOX2a         --------->MYB52(1)             ------>ZmHOX2a(1)                                    ------>ZmHOX2a(2)     ----------------->AGL1            --------->TOE2(2)                                    <------ZmHOX2a(2) <---------ICU4<------ZmHOX2a(2)       --------->TOE1(2)                                   <---------ARR11(3) ------>YAB1   ================================HOX2a_HOX2a                           ----------->GT1 -----DOF2    <---------ARR14(2)      ------>ZmHOX2a(2)                 <---------ANAC46   --------->ARR11(3) =====================HOX2a_HOX2a    <------ZmHOX2a(2)                  <---------ANAC58   --------->AGP1 ======================HOX2a_HOX2a  <---------ARR14(2)                  <-----------------AGL1    --- ---------YAB1--------->ARR14(2)    --------->ARR14(2)                  <---------ANAC58   <---------AGP1   tgatgattccgaaacggatcgggtcgagattgaaatcggatcctacgttatcggagccatgttctcccaaggtttcttgtatcggaagggttagatctaa  19546100  Previous    Next  AGI:  At3g52705.1    Description:  transposable element gene. copia-like retrotransposon family, has a 7.3e-24 P-value blast match to reverse transcriptase (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 19544898    to: 19545216    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g52710.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15901.1) Range:  from: 19545563    to: 19546996    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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