Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               ----------->GT1                               <----------DOF2               --------->ANAC46                               --------------->AGL15         --------->ANAC58                               <---------------AGL15         --------->ANAC58                              <-----------------AGL1    --------->ANAC58                              <-----------------AGL2    --------->ANAC58                              ----------------->AG      --------->ANAC46                              ----------------->AGL1  ------->GAMYB                             <-----------------AGL1  <---------ATHB12      <---------YAB1    <---------YAB1              --------->ANAC58   --------->ICU4     <---------ICU4                ------>MYB46(1)   <---------YAB1     --------->YAB1           --------->ANAC58   ------>ZmHOX2a(1) --------->ICU4            --------->ANAC46                      --------->MYB46(3)  --------->TOE2(3)<---------ICU4              --------->ANAC58                     >>>>>>>>>>>>>>>>>LFY ---MYB52(1)       <--------HAHB4     ----------->GT1--------->MYB46(3)            <-----------GT1 --RAP2.6(3)      --------->ICU4      <----------ID1--------->ANAC58            --------->YAB1 -->GT1           <---------YAB1 --------->ATHB12   -------->P          --------->DAG2 >MYB.PH3(1)    --------->YAB1<-----------------AG  ------>MYB83       ---------->DOF2   caatccttattagtaatttcataattatgttttctttattgggaaaaacaccccaaccaagacacgaaaaacaaaaagtcaattttaaccattgtgtttt  19535800                                                          <---------ANAC58                                                          <---------ANAC58                      -----                                                 <--------P                                   <------                                              --------->LBD16                                 <------                            ----------->HVH21<---------ANAC58                            <---------MYB46(3)                          <---------ANAC58   <---------ANAC58      <-----------GT1   --------->ATHB12                          <---------ANAC58   <---------ANAC46 --------->MYB52(2)    <---------YAB1<--          <---------At4g35610               <---------LBD16  <-------TEIL     <---------ANAC46<------ <----------DOF2        <---------ANAC46--------->GLK1(2)<---------------AtSPL8   <---------CCA1(2)   tgtctttgtgccatctgttttgagttttgtgtgactcttaagaatttgcgggtagcaatggggttcgtttaactcgtgttctgtatatcattggtttcct  19535900               --------->AHL20(2)               --------->AHL20(1) ->ZmHOX2a(1)  <---------AHL20(2) ---ANAC58    --------->AHL20(2)               <---------AHL20(2)              ---------->DOF2 ---ANAC46    <---------AHL20(2)          <---------YAB1                  ------------>CBF -------MYB52(1)                       <---------YAB1                ---------->DOF2 ---ANAC58  --------->YAB1       <----------DOF2           <-----------RAV1(2)<---------ATHB12   gtttgttttttaaaaaataatttgtttattcatgtctttttctgattattttatgtatggtccaggcttactaaagcccaataaaggcccaaacttgtta  19536000                               <---------YAB1                             <---------ICU4                             --------->YAB1                                           <---------At4g35610                            <---------YAB1                                            <------NtERF2                         --------->TGA2(2)                                            <---------ZAT2                        <-----------TGA1                                             ------>NtERF2                       --------->ANAC58                                              <---------ATERF1(1)                       --------->ANAC58                                             <---------DEAR3(1)                       --------->ANAC46                      --------->LBD16        <---------ATERF1(2)                       ==========================bZIP_DOF   --------->ANAC58        --------->ATERF1(2)                       --------->bZIP60(2)                  --------->ANAC58       --------->RAP2.6(3)                       <---------bZIP60(1)                  <---------ALFIN1       --------->SPL7                       <---------O2                        <---------LBD16        <---------ATERF1(1)                       --------->O2                        <------NtERF2         <---------SPL7                       <---------ANAC55(2)                --------->DEAR3(1)    --------->ATERF1(2)                       --------->TGA1a                   --------->ANAC46       <---------ATERF1(2)                       --------->ANAC55(1)              ------>NtERF2           --------->MYB46(3)                       <---------TGA1a                 --------->ANAC46        --------->DEAR3(2)                       --------->ANAC55(2)          <---------ARR14(2)         --------->RAP2.6(3)                       --------->bZIP60(1)          <-----------GT1           --------->MYB52(1)                      <-----------STF1---------->DOF2 --------->MYB46(3)      ------>MYB83 ----------                <---------ATHB12--------->YAB1      --------->ARR14(2)        -------->P<---------MYB46(3)            ------------>CBF--------->ICU4         <---------CCA1(2)          ------>MYB46(1)       <   tcgtttcaaattagcacaatcactcacgtcatcatcatattaaagcaaaatttgtatccgccccgcattatccaaaaccctaccggccggctgttcaatt  19536100                  --------->O2              <-----------HVH21              ------>NtERF2                                        --------->REM1(2)     ------>ZmHOX2a(1)                                          <---------ANAC58                 ---- --------->ARR14(2)                                             <---------ANAC58               <----- <---------ARR14(2)        <------------CBF                     <---------ANAC46              ------- ------->TEIL--------->DEAR3(1)                         <---------ANAC46                --------->YAB1 -->CBF----------->HVH21------------>CBF                <---------ANAC58               <---------YAB1 ---------CCA1(2) <---------O2        ------------>CBF  <---------ANAC58            <---------YAB1  -   ctgtatcctctaacgccgtctcgtctcacaattggtgagtttcaatctcttctaattttcgtgtttgcgtttagagcgtttgaaatacgattataacacc  19536200                                                                                        --------->GLK1(2)        ------->GAMYB                                                                  <---------ARR14(2)        --------->ANAC58                                                  --------->CCA1(2)        --------->ANAC46                                          <---------ANAC58     <---------GLK1(2)        --------->ANAC58                                          <---------ANAC46     --------->ARR14(2)  --------->ANAC58                                            --------->At4g35610    --------->LBD16  --------->ANAC58                                        ------->TEIL   <---------ARR11(3) --------->DAG2                                      <------ZmHOX2a(1)   --------->ARR11(3) ----->LBD16                                     <---------ARR14(2)      <---------ARR14(2) ----LBD16                                      <------ZmHOX2a(1) <---------ANAC58 <---------LBD16 -->MYB52(1)                    <---------TOE2(3)--------->ARR14(2)      --------->ARR14(2)    <----- --------->DOF2            --------->GLK1(1) <------ZmHOX2a(1)<---------At4g35610  <---------At4g35610   ggaaaagcaaacgccataacaacgatgagaaatcaaggttttacgaaggaggataggatgaatcagttgcctgaagatttgattctgcggattctgtctt  19536300                                                                                                   --                                                                                                 <---                                                                                                 ----                                                                        --------->ARR14(2)       ----                                                                        <---------ARR14(2)       <---                                                                       <---------CCA1(2)    ---------                                                                    <------NtERF2           <--------                                                                <------MYB46(1)            --------->ICU4               <---------YAB1                                   <------MYB83               <---------YAB1         --------->ARR11(3)                                    --------->ALFIN1          <---------At4g35610       ------->GAMYB                           <---------ANAC58--------->MYB111(1)      <---------YAB1    ----------->RAV1(1)                        <---------ANAC58--------->MYB111(2)   --------->GLK1(2) -----DOF2    <-----------HVH21                <---------RAP2.6(2) ------>NtERF2    <---------GLK1(2)   ttcttccaacagaacttgtcatagcaacgagtgttttgtctaaacaatggcggtctctatggaagttggtgccaaatctcgagttcgattctgatgatta  19536400    --------->ZAT18    <---------ZAT18    --------->ZAT14 -------->DOF2 ------ANAC55(2) ----->ANAC58                               <----------DOF2 ----->ANAC58                          <----------DOF2      --------->LBD16   <---------At4g35610 ------YAB1                      <---------AtLEC2         <---------LBD16    ------->TEIL           < >ATHB12                     <---------ANAC58       ---------->DOF2         <---------AtLEC2       -- -ICU4 --------->ZAT6        <---------ANAC58    --------->ANAC46 ---------->DOF2            --------   cgaaagtgaacactatacattttcagagattgtttgcaagtctttcctttcactcaaagctccggttctaaagagtttgcatctcagttttagatgaaag  19536500                                                                                       --------->ARR11(3)                                                                                       <---------ARR11(3)               --------->MYB52(1)                                                      --------->ARR14(2)              <---------GLK1(1)        <---------MYB52(1)                              <-----------ARR10             <---------ARR11(3)      <---------ANAC58  --------->LBD16                 <---------ARR14(2) <---------MYB52(1)   <----------DOF2<---------ANAC58 <---------ANAC58             <---------At4g35610 -------GAMYB--------->ARR11(3)      <---------ANAC46 <---------AtLEC2             --------->At4g35610 --------->GT1--------->CCA1(2)  <---------GLK1(1)    <---------ANAC58          --------->LBD16 <---- -->DOF2------>ZmHOX2a(1)      <------ZmHOX2a(1)      <---------ANAC46 <-----------RAV1(1)      -----   tcagttaatcctgtagatatcggactttggataggaattgcgtttgctcgacatttgcgtgaattggtactctatgttgccccgaagcagaccttcacat  19536600                                                                                 <----------DOF2           <---------ANAC46                                                   <---------ARR14(2)       <---------ANAC58                                                   <---------LBD16       <---------ANAC58                                                 <---------WRKY18(1)       <---------ANAC46                                              <---------ANAC58 --------->LBD16          --------->TGA1a                    --------->ETT(2) --------->ARR14(2) -----GLK1(1)             <---------TGA1a                    <---------ETT(2)<---------MYB52(1)   <-- ---->GLK1(1)       <-----------GT1                    <-------TEIL  <---------ANAC58  <---------GLK1(1)   ttccgagtagcttgtgtatttgtaacacacttgagactttgaaactcatacttgggattcatgtagacataccttgtccggttcttttgaaatctcttag  19536700  Previous    Next  AGI:  At3g52660.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G00830.2); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G00830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48737.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 19532638    to: 19535884    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g52670.1    Description:  F-box family protein. Identical to Putative FBD-associated F-box protein At3g52670 [Arabidopsis Thaliana] (GB:Q9LXJ7); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G52680.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G52680.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 19536225    to: 19537715    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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