Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->LBD16                                                                                      <---------ANAC46                                                                                      <xxxxxxxxxxxxxx                                                                                     --------->LBD16                                                                                     <---------LBD16                                                                                    xxxxxxxxxxxxxxxxx                                                                                    <---------ANAC46                                                                                  --------->SPL7                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                             <---------ANAC46                                                                           --------->LBD16                                                                           <---------LBD16 <xxxxxxxxx                                                                           ------>NtERF2 <-------GAMYB                                                                         <---------LBD16----------->GT1                           --------->AHL20(2)                        <xxxxxxxxxxxxxxxxsmallRNA(i)                           <---------YAB1                        -------->HAHB4 <---------SPL7                           <---------AHL20(2)                    <---------ICU4 <xxxxxxxxxxxxxxxxsmallRNA(s)                          --------->AHL20(2)                     --------->ATHB51xxxxxxxxxxxxxxxxxxxx                          <---------AHL20(1)                     <--------ATHB1 xxxxxxxxxxxxxxxx>smallRNA(le3)              <---------AHL20(2)                                xxxxxxxxxxxxxxxx>smallRNA(s)           <---------AHL20(1)                                   --------->ICU4  <---------ZAT14           --------->AHL20(2)                                   <---------YAB1 --------->ALFIN1           --------->AHL20(1)                                   <---------ATHB51--------->ZAT14          <---------AHL20(2)    <-----------GT1                 --------->AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(s)      --------->AHL20(2)  --------->AHL20(1)    <-----------GT1 <---------AHL20(2)------->TEIL      <---------AHL20(2) --------->YAB1   --------->AHL20(2)  --------->YAB1<---------DEAR3(1) -------->AHL20(2)  >>>>>>>>>GATA-1    <----------DOF2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tataaaatataaatattttatagataaatataatttacagacttttatatatactaattttaaaaaataattgtctccgcggtgtaccgcgggttataat  19532200                           <-----------GT1                        --------->AHL20(1)                        --------->ARR11(3)                        <---------AHL20(1)                        <---------ARR11(3)               ----------->GT1             ---------->DOF2<---------YAB1        <---------------AGL15        ================================================================================MADS_MADS    <---------ANAC46  <---------AHL20(1)                                                  <---------- xxsmallRNA(s) <----------ID1                                                    <---------ANAC58 xx>smallRNA(fl3)     <---------ARR11(3)                                         <---------ANAC58 xx>smallRNA(fl3)     --------->AHL20(1)                                   <---------AHL20(2) xxxxxxxsmallRNA(s)   --------->ARR11(3)                                --------------->AGL15 xx>smallRNA(se3)  --------->AHL20(2)      <----------DOF2           <-----------GT1   <---------ICU4   ctagttgtttatacaaaaagaaaaaatattttcattccacattttctttttttttttgtaagaaatttgtattacattttatggcttcatttttacaaaa  19532300                     <---------TOE2(3)                --------->ATHB12              <---------WOX13(1)            --------->ATHB12           --------->ICU4           <---------YAB1         --------->YAB1         -------->HAHB4         <---------ICU4        --------->ICU4                 --------->AHL20(2)                                   --------- -GT1   <---------ATHB51  <---------YAB1     --------->ANAC46    ----------->GT1 --------->ARR11(3)   tcgtagactaattatgattgattagggtattatttgctagattatataggcaagttttggctaaaaattgataaaaaaaaaaacatattgtatatggtaa  19532400                                                     ----------->GT1                                                 --------->ARR11(3)                                                 <---------ARR11(3)                   <-----------GT1          <---------ANAC46                <---------ATHB51           <---------TOE2(3)                           ----------->GT1   --------->YAB1<---------ICU4           --------->MYB52(1)    <---------AtLEC2       <---------ZAT6  <---------YAB1--------->ICU4          <---------MYB52(2) <-----------GT1 ----------->GT1 -->GT1  ---------->DOF2           <-----------GT1<------ZmHOX2a(2)        <---------TOE2(3)   aactataattttaaagaaattattccatatgtgattttaacaaataacgtagatcatgtataaactgcatgttaattaagaaaaaactagtgttaatttt  19532500                                                                                           ----------                              --------->ARR14(2)                                         <------ZmHOX2a(2)                              <---------ARR14(2)                                        <---------ARR14(2)                              <---------GLK1(2)                                         --------->ARR14(2)                           <------NtERF2                                                <---------ARR11(3)                         --------->RAP2.6(2)                                            --------->ARR11(3)                      --------->DAG2                                                  <---------YAB1                     ---------->DOF2                                         <---------ANAC46                --------->AHL20(2)                                           <---------ANAC58              --------->AHL20(2)                           <---------AtLEC2  <---------ANAC58       ----------->GT1--------->ANAC46        ---------->DOF2               ---------->ID1------>ZmHOX2a(2)   gaaaacaatgtgtaaaaaaaatataaggcgcaaattctcatccaacttgaaagttttttttgcataaaaatcaaatttgtcgtatattaagatcggtaat  19532600               <------MYB83              --------->REM1(1)               <------MYB46(1)  --------->DAG2              <---------AtMYB61---------->DOF2            <------------CBF <---------AHL20(2)  <---------RAP2.6(3)        --------->AHL20(2)  --------->At5g28300     --------->YAB1 <---------ALFIN1  --------->LBD16        <---------YAB1 <---------ZAT14 ----------->GT1<-----------HVH21----------->GT1                            <-----------HVH21 --------->RAP2.6(2)   --------->YAB1 *TSS                            <----------DOF2         <------ ->GT1    <---------TOE2(3)  --------->YAB1    --------------------->WRI1 --------->MYB59----------->RAV1(1)   aagccgtaatataagattggtcgcatcataataaaaagtgactacacctccttgatagtctcgcttaggcatcttttaggtcatatcaatacaacataca  19532700                                                                                        <---------ZAT2                                                                                        --------->ZAT2                                                                                        <------NtERF2                                                                                        --------->At4g35610                                                                                        <---------At4g35610                                                                                     <---------MYB52(1)                          <---------ANAC46                                          --------->LBD16                         <-------TEIL                                               ------>NtERF2   <                        --------->ALFIN1                                           --------->HSFB2a(2)                      <---------ANAC58                      --------->ICU4         <---------ATERF1(2)                      <---------ANAC58                   <---------MYB52(1)        --------->ATERF1(2)                 --------->At4g35610                    --------->LBD16            <---------HSFB2a(2)                 ----------->RAV1(2)                   --------->ANAC46 <---------TOE2(3)       <----  <-------TEIL <---------ALFIN1   --------->CCA1(2)    --------->ANAC55(2)        <---------LBD16 <-- -TEIL    <-----------GT1--------->ZAT18           ------>ZmHOX2a(1)    <---------TOE1(3)      <-----   catatacatatttttcaacacctgaggtgcgcgaagatagacacttcttcatcctctccgtaattctcaaaattagggttttcttccggcagctctctca  19532800                                                                                <---------------AGL15                                                                                --------------->AGL15                                                                               <-----------------AGL2                                                                               ------>ZmHOX2a(2)                                                                               <-----------------AGL1                                                                               ----------------->AGL3                                                                               ----------------->AGL2                                                                               <-----------------AGL3                                                                              <------ZmHOX2a(2)                                                                         <------MYB46(1)                                                            <----------DOF2  <---------ARR14(2)                                                         ------->TEIL  <--------P                                 ------>NtERF2           --------->GLK1(2)   --------->ARR14(2)  <----------DOF2                <---------RAP2.3(1)    <---------CCA1(2)<------MYB83 -------TEIL<----------DOF2     <---------ANAC58    <---------ANAC58  <-------GAMYB -----TOE1(2)                   <---------ANAC58    <---------ANAC58  <---------ANAC58 -------MYB52(1)        <---------At4g35610         <---------ANAC46  <---------ANAC58            <-- ------RAV1(2)     <----------DOF2               <----------DOF2     <---------MYB46(3)    <---------GLK1(1)   ggtactttctcgctctttcttctttcatctcattgcgcctctcttcgtttcctttcgtgaatctttttttttggttggggatccaaaattgggatttgtg  19532900                                                     <---------WOX13(1)                                                   <--------ATHB1                                                   <---------ICU4                                                   --------->YAB1               --------->ATHB12                                                   -------->ATHB1              <---------YAB1                                                   --------->ATHB12          <----------DOF2                                                  <---------YAB1         --------->ANAC58                --------->AHL20(2)                <---------ATHB12       --------->ANAC46          --------->YAB1  ------->TEIL            <---------ATHB51       --------->ANAC58          --------->TOE2(3)                       --------->ICU4<---------At4g35610       <---------CCA1(2) <---------GLK1(2)     ------------>ATHB5--------->TOE1(3)<---------WOX13(1) ---------GT1   <---------AHL20(2)          ---------->ID1      --------->At4g35610   taactcttcttatcttaattaaaaactgaatctttctctcatttttgttccaatgattgctaagttagcttaaacacgcctttgattgacatttctctga  19533000                                          -------->ATHB1                                          --------->YAB1                                         <---------YAB1                                       --------->WOX13(1)                               <-------GAMYB                                                     <---                               <---------ANAC58                                                  ----                               <---------ANAC46                                                 <----                               <---------ANAC58                                               <------                              <---------MYB46(3)                     --------->AHL20(2)   <---------At4g35610                       <---------MYB46(3)<---------ATHB12         --------->YAB1          --------->At4g35610                      <--------P    ------->TEIL                 --------->ICU4           --------->ZAT2     <----------DOF2 <-------GAMYB <---------CCA1(2)      <---------ANAC46        ----------->GT1<---   gttatagctttgtatgtgtattgggttgttcttggttgtatctatcattgtggtcaatttgtgtgaaataatcaaatagaattgtagttataagctgagg  19533100  Previous    Next  AGI:  At3g52660.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G00830.2); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G00830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48737.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 19532638    to: 19535884    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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