Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->GLK1(1)                         <-------TEIL                       <---------GLK1(1)                      --------->At4g35610                   --------->ANAC58                          <---------------AtSPL8                 -                   --------->ANAC58       <-------TEIL       --------->MYB59                        -               --------->ANAC58      ----------->RAV1(1)    <-----------RAV1(2)                     -               --------->ANAC58   ------->GAMYB           <-----------HVH21                       ---              <-------TEIL   <---------ATHB12      --------->At4g35610 <-------TEIL            ------          <-----------------------TaNAC69(2)--------->TOE2(3)<---------------AtSPL3          --------   acagattgagaagacgtacacaaggaaacccatcaacagcaacatacattagcttctgaaggtcaggtacagattcaatagatgttatctcatctacaca  19531100      --------->TOE1(3)                                               ----------->GT1      --------->TOE2(3)                                            ---------->DOF2   --------->ARR14(2)                                           --------->LBD16 -------->ANAC58                                               --------->LBD16 -------->ANAC58                                               <---------LBD16 -------->ANAC46                                              <---------LBD16 ------>MYB52(1)                                             <---------LBD16 --->ANAC46     <---------At4g35610                      <---------AHL20(2)                 --------- ->ANAC46       --------->At4g35610                     --------->AHL20(2)                  ---------   aaacgaaacctcaatttcagattacaatgttctatcaactaatacatttcatcaccaattttatccggggaaaggaaactcaccagcgagagagagatga  19531200                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                             --------                                                                                             <-------                                                                                        <---------ICU4                                                                                        <--------HAHB4                                                                                       <---------ATHB51     <------ZmHOX2a(1)                                                                 <---------YAB1 <------ZmHOX2a(1)                                                                  <---------ANAC46 >CCA1(2) ---------->DOF2  ---------->DOF2<----------ID1                <-----------HVH21 <---------YAB1 >At4g35610            <---------ZAT6---------->DOF2                   --------->ANAC46--------->ICU4   agaggaaggattgaaagtagaacaagtgtaaaagctatagaaagaagacgaataagtcccattgccatagcatccgtcagagagttgcgattattagcgg  19531300                         <-------TEIL            <---------ICU4                                                                          -           <---------ATHB12                                                                         -     --------->AtLEC2   --------->ARR14(1)                                                          < --------At4g35610      --------->CCA1(2)                   <------ZmHOX2a(2)                       - --------HSFC1(2)      --------->ARR14(2)                  <---------ARR11(3)                 <------ ------->HSFC1(2)      <---------ARR14(2)              ---------->DOF2                        ------- ------>ANAC58         --------->ARR11(1)            <---------YAB1                         --------- ------>ANAC58     <---------At4g35610   ----------->HVH21 --------->ARR11(3)               --------- ->At4g35610--------->YAB1        --------->YAB1  <---------AHL20(2)       --------->GLK1(2)<-------- --LBD16  <-----------ARR10  <------ZmHOX2a(2)   --------->AHL20(2)       <---------GLK1(2)----------   aagctacttgcaaatcatcgctgcagatacgatcaagaataatgtgaccgattttataaaagatcaaaaaatgttagaatcggaagaagcagtacctggg  19531400      --------->DAG2     ---------->DOF2                                                            <---------DEAR3(1) -------->ANAC58                                                               <---------LBD16 ---------->GT1                                                       --------->ANAC58 ----------ID1                                     <------NtERF2      --------->ANAC58 -------->ANAC58                                  --------->LBD16    <---------LBD16 ---------------WRI1                             --------->DEAR3(1)--------->STY1(2) -->LBD16                                       <---------LBD16    <---------STY1(2) >TOE1(2)                                  <---------GLK1(2)       <---------ZAT2   <---------MYB46(3) >TOE2(2)----------->GT1                   --------->ARR14(2)      --------->ZAT2   --------->MYB55(2) -LBD16--------->DAG2                      <---------ARR14(2)     ------>MYB83<---------ANAC46   ---- ->RAV1(2)                               ----------->ARR10        ------>MYB46(1)  --------->ALFIN1   aaacgaaaaaaggggaaattggaagagagagcgagagagaggtccgattcgccggagaaatggaaacctagctcggaattacgcggtgggagtctgagtc  19531500                                                                                                  ---                                                                                                -----                                                                                           ==========                                                                                           <---------YAB1                                                                                           <---------                                                                                          --------->AHL20(1)                                                                                          <---------AHL20(1)                                                                                          --------->AHL20(2)                                                                                          <---------AHL20(2)                                                                                         --------->YAB1                                                                                         --------->AHL20(2)                      *TSS                                                              <---------YAB1             <---------ANAC46                                <---------TOE2(3)       <---------AHL20(2)             <---------ANAC58                            <------------CBF         <---------ARR14(2)           <-----------GT1                         ----------->GT1                --------->ARR14(2)       --------->ARR11(3)                      --------->ARR11(3)             <---------LBD16  <-----       <---------ARR11(3)         --------->YAB1--------->CCA1(2)   <-----------GT1  --------->AHL20(2) ------>DOF2 <---------ANAC58  <----------DOF2 <---------ARR11(3) ----------------------->TaNAC69(2)-   aaagactgagatttttcgtgttgattcttatgtctttcaaaattcccaagatatagaaaaattgaggtattcacattttgtgcggattttattatattaa  19531600                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <-----------GT1                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                          xxxxxxxxxxxxxxx>smallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(i)     <                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(s)     -                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            --------->ARR11(1)               <-------                                                            --------->ARR14(2)              <--------                                                            <---------ARR14(2)              <--------                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i)                          <---------AHL20(2)              <---------TOE1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         --------->AHL20(1)              ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      <---------AHL20(2)                 --------------->AGL15              <--------                      --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s)               ------>MYB46(1)       xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               ------>MYB83    xxxxxxxxxxxxxxxx>smallRNA(i) <---------GLK1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)      <---------ANAC55(2)<---------AHL20(1)              <---------------AGL15   xxxxxxxxxxxxxxxx>smallRNA(s)    <---------AHL20(2)<-----------TBP<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      ----------------->AGL2 xxxxxxxxxxxxxxxx>smallRNA(s) ----->DOF2------->TEIL <---------AHL20(2) ----------->GT1<---------TOE2(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ========================================================================MADS_MADS  ------>NtERF2  <- ------AGL15 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)       <-----------------AGL3 xxxxxxxxxxxxxxxxxxxxxx ----AHL20(2)<---------MYB59<---------AHL20(2)          <-----------------AGL2 xxxxxxxxxxxxxxxx>smallRNA(i) -------->AHL20(2)  <-----------TBP ------>NtERF2 --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   aagtaattaagtgaacctatctatatatatatttttgcagccattttgtaaaataaatcctagatttggaacttatttacaatggctgccactggctttt  19531700                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                <---------GLK1(1)                                                                                --------->GLK1(1)                                                                               <---------ARR14(2)                                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     <---------ARR11(3)        --------->ARR14(2)                                                     --------->AHL20(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->AHL20(2)                               <---------AHL20(2)      <---------TOE2(2)    <---------AHL20(2)                               --------->ARR11(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------AHL20(2)           --------->MYB46(3)   <---------AHL20(1)   --------->ANAC58 ---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <---------CCA1(2) -------->AHL20(2)   <---------AHL20(1)              --------->AHL20(2)   --------->ANAC46 ---DOF2             <---------AHL20(2)             --------->AHL20(2)    --------->ANAC58 -ANAC58             --------->AHL20(1)   <---------AHL20(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -ANAC58   <----------DOF2  <---------WOX13(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -ANAC46<---------AHL20(2)--------->ATHB12<---------ARR11(3)     <xxxxxxxxxxxxxxxxxxsmallRNA(le3) --------AHL20(2)    --------->AHL20(2)   --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) >smallRNA(i2)      <---------ATHB12      --------->ARR11(3) <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   atttatttattttcttttagcaataaattgattaacaaacaaaaaatattccaaatatattccaatcccatatatcacgcagatttctccaaaatttgaa  19531800                                                           --------->TOE2(3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           XXXXXXXXXXXXXXXXXXXX>MIR406                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           --------->ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            --------->AHL20(2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <---------AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC58           <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->ANAC58        --           --------->ICU4  --------->AHL20(1)    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <--------    <---------LBD16        <---------ARR11(3)   <xxxxxxxxxxxxxxxxsmallRNA(i)  ------->TEIL  <--------  <---------GLK1(1)        <---------AHL20(1)  <---------YAB1 --------->AHL20(2)      <-------TEIL <x   ctagatttcggaaattatttaaaacaaaaaatatttgacaaaccaaaatacaattgcaatcccttaaaatgagcaaaacgcacataaatacatttcttat  19531900                                                                                               ------                                                                                              <------                                                                                              ------- --------->ZAT18                                                                              ------- <---------ZAT18                                                                              ------- <---------ZAT14                                                                             <------- --------->ZAT14                                                                  <---------AHL20(2)- ------->At4g35610                                                                <---------YAB1<---- -ANAC58  --------->TOE2(3)                                                      --------->AHL20(1) < -ANAC58<---------ARR11(3)                                                       <---------AHL20(1) < xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <---------AHL20(2)             --------->AHL20(2)--   cagttcactaaatcttatttctccaaaatttgaattagatttcgacaactatttaaaacaaaaatttgtttgacaaactaaaatataattgcaatcccgt  19532000  Previous    Next  AGI:  At3g52640.1    Description:  nicastrin-related. Identical to Nicastrin precursor [Arabidopsis Thaliana] (GB:Q8GUM5;GB:Q9LXJ9;GB:Q9LXK0); similar to unnamed protein product [Vitis vinifera] (GB:CAO44743.1); similar to Os02g0736500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048054.1); contains InterPro domain Nicastrin; (InterPro:IPR008710) Range:  from: 19525851    to: 19531522    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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