Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------AHL20(2)       <----------DOF2                 <                                        ----------->GT1             <---------DAG2                <--        --------->ANAC58      <---------ARR11(3)                 <-----------GT1             -------- ----DOF2       ---------->DOF2 ------>ZmHOX2a(2)           <----------DOF2             <---------TOE2(3) ---DAG2--------->ANAC58      --------->ARR11(3)        <-----------GT1                 ----------->GT1   tgctataaccaagaaattgaaagagaataaatgatcttatacaagttaatttctcaattttcctttgtaacttttcttacataagaaattaagaaaaaaa  19524600                            --------->ARR11(3)                         <---------AHL20(2)                         --------->AHL20(2)                        --------->YAB1                       <---------YAB1                     --------->YAB1                     <--------HAHB4                     <---------ICU4                     -------->ATHB1                     -------->HAHB4                     <---------AHL20(2)                     --------->ATHB51                    <---------YAB1                    --------->ICU4                    <---------ATHB51                  --------->YAB1                  --------->ATHB51                  <--------HAHB4                  -------->HAHB4                  <--------ATHB1                  <---------ICU4                 --------->AHL20(2)                 <---------YAB1                 --------->ICU4                     --------->ICU4<---------AHL20(2)                 <---------ATHB51                <---------AHL20(2)        --------->AHL20(2)          --------->AHL20(2)<---------ARR11(3) --------->ANAC55(2)<---------ATHB51 ---------YAB1 --------->YAB1          <---------AHL20(2)      <---------AHL20(2) ---------GT1 <---------AHL20(2)       --------->AHL20(2)     --------->AHL20(2)                <---- ->AHL20(2)  --------->AHL20(2)      <---------AHL20(2)       <---------AHL20(2)           ----------   taactattgacattatataataattattaaaatctctatatttttttatatgtaatttttaaaattaaataatgcaattgaataccattttttgtttttt  19524700                                                                                                -----                                                                                                -----                                ----------->GT1       --------->YAB1                            -----                             ------->TEIL       --------->TOE2(3)                             -------                          <---------YAB1      ------>MYB83--------->MYB52(1)                <------ZmHOX2a(2)                   <---------ANAC46           ------>MYB46(1)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <---------ANAC58   <---------------AtSPL8             <---------ANAC46 ------->GAMYB -------GT1        <---------ANAC58   --------------->AtSPL8   <---------ARR14(2)      --------->MYB52(1) >ID1<---------TOE2(3)   <---------TOE2(3)   ----------->RAV1(1)         ----------->GT1 --------->MYB46(3)   tcaaactatggtttgaataatgcgtttaatgaatgtgttaattgtaccaacatcaaaaataaacgaattctggttttgtgaaaaaaactcaacgatccaa  19524800                                                                                          -----------                                                                                        --------->O2                                                                                     <------NtERF2                                                                                    ------>NtERF2       ---------->DOF2                                          <-----------GT1   --------->RAP2.3(1) <---------ALFIN1                                      --------->PCF2             <------NtERF2 ---->ANAC58                   <-------TEIL          <------MYB46(1)             <---------ATERF1(1) ---->ANAC58          <-------TEIL                   <------MYB83               <---------DEAR3(1) ---->ANAC46<<<<<<<<<<<<<<<<<LFY                 --------->ATHB12            <-----------RAV1(1) -->TOE1(2) ----------------->AGL1       --------->YAB1---------->ID1        <---------MYB46(3) <----   ggaacacctaaaaggcccaatgggtacaatacatacaggcccataatcaaacgattggtcccattgtttctcttcatatttgttggcgccatgtgaagct  19524900              <---------ARR14(2)                                                            <-------TEIL              --------->ARR14(2)                                             <---------GLK1(1)        ------>NtERF2                                                     *TSS   --------->DEAR3(1)        --------->LBD16                                              <--------HAHB4   --------->MYB52(1)      <---------LBD16                                                --------->ATHB12<---------SPL7     >>>>>>>>>>E2Fb                                                  <---------ICU4 --------->MYB46(3) >HVH21--------->ANAC46                     ---------->DOF2         <---------ATHB12<---------MYB52(2) ------DOF2   <---------GLK1(2)    ---------->DOF2 ------>ZmHOX2a(1)--------->ICU4------>NtERF2     -   tttcatttcccgcccaaattctctccataaactctctcaaagcctagaaagtcctcagaagttagggctaatcatttgcaactccgacgaacgattcatc  19525000             <---------ARR11(3)             --------->ARR11(3)                                                                <-----             --------->ARR14(2)                                                              <-------             <---------ARR14(2)                                                             <--------           >>>>>>>>>GT-1                                                                   <---------CCA1(2)         --------->At5g28300  <------------------------ANAC81     ------>ZmHOX2a(1)      <----------DOF2        ----------->GT1 <---------ICU4                            --------->LBD16        <---------DAG2 -------->HSFB2a(2)    <---------ATHB12                      <---------GLK1(1)     <-----------GT1   ttctccaacaaggtaaatcttcttaatcaattctcttcccttcgattgaatttctcaaaatcgatttcctggttttcaaaatttttaatccctttatctt  19525100         --------->ANAC55(2)         --------->ANAC58         <---------ANAC55(2)         --------->ANAC46                      ----------->GT1 -----DOF2                           ------->TEIL                                <----------DOF2 --YAB1  --------->ANAC58      <----------DOF2--------->ZAT6                   <---------At4g35610 -ARR11(3)          <-----------GT1 <---------CCA1(2)                      ------>ZmHOX2a(1)    <----   tgctattgaatacgaaactgatttaccaattcgcttttgaatctttgaacagtagatagcaatggatacttcaagtccttcagcttttgtgaacggagct  19525200                                                                                                   <-                                                                                                  ===                                                                                                  ===                                                                                                  ===                                                                             --------->ARR14(2)   ===                                                                             <-----------ARR10   <---                                                                        <------MYB83             ====                                                                        <------MYB46(1)          ====                                                                      <--------P                <----                                                                      <<<<<<<<<<MYB80           <----                                                                     <-------GAMYB              -----                                                                    <---------MYB46(3)    ===========                                                                    --------->MYB55(2)    ===========                                                                   <---------AtMYB61      ------>ZmHOX2a(2)                                                                 <-----------RAV1(1)    --------->ARR11(3)          <-------TEIL                        <---------ANAC46  ------>ZmHOX2a(2)       <---------ARR11(3)     <------ZmHOX2a(1)--------->DAG2       ----------->HVH21  <---------AGP1 <---------ARR14(2) -----   <---------ANAC46  ---------->DOF2     --------->ANAC55(2)  <---------ARR14(2)    --------->YAB1--- ------DOF2--------->ATHB12       <---------YAB1              --------->ARR14(2)   --------->ICU4====   ttgttgaggagattcattggccaaaaagtcagaactgtgattcaagtgactggttcagagattggatctgtggttggcaaatctactgatgatcttcaga  19525300            ------>ZmHOX2a(2)            =================HOX2a_HOX2a            ==============HOX2a_HOX2a          --------->ARR11(3)          --------->ARR14(2)          <-----------ARR10          <---------ARR11(3)          <---------ARR14(2)         <------ZmHOX2a(1) ------GAMYB=======================HOX2a_HOX2a ============================HOX2a_HOX2a ==================================HOX2a_HOX2a =========================HOX2a_HOX2a ===============HOX2a_HOX2a                                                                     <---- ---ZmHOX2a(2)                                                                                  ----- =========================HOX2a_HOX2a                                                           <---- ============================HOX2a_HOX2a                                                        ----- -----ARR11(3)                                                                                  ===== -----ARR14(2)                                                                     <---------At4g35610 ---->ARR11(3)                                                           --------->ANAC58       ----- =========================HOX2a_HOX2a                                    --------->ANAC58       <---- ===============HOX2a_HOX2a                                              --------->ZAT6         <---- ---->ARR14(2)        ------>ZmHOX2a(1)      <---------TOE2(3)      --------->YAB1 --------->At4g35610 --->ZmHOX2a(2)    ------>ZmHOX2a(1)   -------->P                  <---------ZAT6  --------->ZAT2---- ===============HOX2a_HOX2a ------>ZmHOX2a(1)<---------TOE1(3)   ----------->GT1   <---------ZAT2<---   tcgttgttagaggatcgtctcctccttctcctcttactacttaccttgaggttattggaattgcagagagtgataacgctattcgagctgaaacttggac  19525400            <---------DAG2            <----------DOF2         <---------ALFIN1        <-----------------AG       ----------->RAV1(1)                                                                         <- -------------AGL3                                                                                 <- ------------>AGL3                                                                           <------- -------------AGL2                                                                       <-------GAMYB ------------>AGL2                                      --------->GLK1(1)             <---------ANAC58 =========================MADS_MADS                    <---------GLK1(2)              <---------ANAC58 ------------>AGL1                                     <---------ARR14(2)             <-------GAMYB<- -------------AGL1                                     --------->ARR14(2)            <---------MYB46(3) -------------AG----------->GT1                     --------->YAB1                  <---------AtMYB61 ----------->AGL15                         <---------ANAC46                   <---------TOE2(3)   <-- ------------AGL15                       --------->REM1(2)             <---------ANAC46 <---------MYB46(3)   caattttggcaacacttttggtaatttagtgattccattactgtgtcgagtttatcagatttgctattgagttgtgttttgatgttttggttgttatttt  19525500  Previous    Next  AGI:  At3g52620.1    Description:  unknown protein Range:  from: 19524064    to: 19524623    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g52630.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18590.1); similar to unknown [Populus trichocarpa] (GB:ABK94610.1); contains InterPro domain Replication factor A protein 3 (InterPro:IPR013970); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 19524974    to: 19525701    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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