Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->YAB1                                                 --------->AHL20(2)                                              --------->YAB1                                            <---------AHL20(2)        <---------YAB1                      --------->AHL20(2)            --------->ZAT18      --------->YAB1                        <---------YAB1        --------->ARR11(3) ---WRKY12                  <----------DOF2--------->YAB1         ------->TEIL ->DOF5.7(2)          <-----------GT1      --------->TOE2(3)     <---------CCA1(2) ---HVH21   <---------AHL20(2)       <-----------GT1         <---------ANAC46 >TOE1(3)   --------->AHL20(2)    <---------GLK1(1)         <---------At4g35610    <----------DOF2  - >TOE2(3)--------->YAB1<-------TEIL  --------->YAB1         <---------ZAT2<---------ZAT18           <   ctattgaactataataaaatcaatatacatctttagaaatcacaatattaataaaaatttgcagcttgtatcttggtgggctagacttttggatgatttt  19511700                                                                                               <-----                                                                                           <---------ANAC58                                                                                           <---------O2                                                                                           <---------ANAC55(1)                                                                                           --------->ANAC55(2)                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                      <---------ICU4                                                                                    <---------TOE2(3)                                                                                   <---------ICU4       <---------AHL20(2)                                                          --------->YAB1 <--       --------->AHL20(2)                                          --------->ARR14(2)<---------YAB1 -------->At4g35610                                      <---------LBD16        --------->YAB1<------ ---------At4g35610              <-------TEIL     <----------DOF2  <---------ARR14(2)--------->ICU4   tcagatgatttatatatgcaatgtattcgtatagtttcatggttcaattagtcttttttctcgggtcaatattcgcatagattaataatgtttacgtggg  19511800                                                                                            <--------                                                              <-----------GT1               ---------                                                              --------->ANAC46       --------->ICU4                                                        <---------YAB1             --------->AHL20(2)                                                      ----------->GT1             --------->AHL20(2)                                                      --------->YAB1              <---------AHL20(2)                                                     ----------->GT1          --------->AHL20(2)        <---------YAB1                               <---------YAB1           <---------AHL20(2)-----   --------->WOX13(1)                              --------->YAB1            --------->AHL20(2)<----- ----DEAR3(2)                                  --------->AHL20(2)       ------------>CBF   <--------- -----TEIL                                     <---------AHL20(2)      <-----------GT1   <---------YAB1 ---TOE1(2)                      <-----------GT1   <---------ICU4    --------->AHL20(2)  <---------AHL20(2)   ttcatcaattactatcaacttgtatgcatgctaaattacaccattgaaattaaaaatgataaatacaccattttaacaatttaaataatttttaattgta  19511900                                                                                             xxxxxxxx                                                                                             <-------                                                                                         --------->ATERF1(1)                                                                                         <------NtERF2                                                                             xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             <---------AtMYB61                                                                            xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   <---------MYB52(1)   ----------->RAV1(1)                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  xxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)-------                        --------------->AtSPL8                    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                        <---------------AtSPL8                    *TSS    <------NtERF2 ------>NtERF2             --------->GLK1(2)                                    xxxxxxxxxxxxxxxx>smallRNA(se3) xxxx -------AtSPL8       ----------->GT1                              xxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------>AtSPL8     <------------CBF       ---------->DOF2         xxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->CBF ------->TEIL              --------->TOE2(3)     ----------->HVH21       xxxxxxxxxxxxxxxx ------GT1   <---------ARR14(2)    --------->AHL20(2)      --------->At4g35610    xxxxxxxxxxxxxxxxxxx ---CBF      --------->ARR14(2)    <---------AHL20(2)      <---------At4g35610--------->ZAT18--------   caattttgaagtctgaatctgaattgtaagtactaaattaaacttaaagagtcatataaacatctgacagtttggccgagtggtctaaggcgccagattt  19512000                        xxxxxxxxxxxxxxxx>smallRNA(i)                       <-------TEIL                      xxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxx>smallRNA(s)                    <---------DEAR3(2)                   <---------TOE1(2)                  --------->ALFIN1     ------------>CBF                  xxxxxxxxxxxxxxx>smallRNA(se3)                  <------NtERF2    --------->ZAT2                <---------ANAC46   <---------ZAT2                <---------ANAC58   <---------At4g35610             xxxxxxxxxxxxxxxx>smallRNA(s)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxx>smallRNA(se3)                                                        ---          ---------->DOF2      <---------ALFIN1                                                   ---        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       <--        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        ---        xxxxxxxxxxxxxxxx>smallRNA(fl3)<-----------HVH21                                      <-------TEIL       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                  <-------       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                ---------      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  --------- xxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(s)                                 ----------->ARR10 --ARR14(2) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           ---------->ID1           <------NtERF2 -->CCA1(2) xxxxxxxxxxxxxxx>smallRNA(se3)      <----------DOF2    <---------TOE1(2)  --------->LBD16 xxxxxxxxxxxxxx>smallRNA(fl3)  ----------->RAV1(1)   <-----------GT1        <---------AHL20(2)    --- x>smallRNA(le3)<---------ANAC58   --------->At4g35610  <----------DOF2     <-----------GT1--------->ARR11(1) x>smallRNA(fl3)--------->ALFIN1 <---------ALFIN1<------------------------ANAC81    --------->DEAR3(1) ->ARR14(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------------------------ANAC81      <---------LBD16<--   aggctctggtccgaaagggcgtgggttcaaatcccacagctgtcaattccttttttttcttttgttccttcgttttatttacttcgccggagagattcga  19512100        *TSS    ---------->DOF2 -------->P ------>At4g35610 ------>ZAT2 -------At4g35610                           ------->TEIL                               ------>NtERF2 ------>HSFC1(2)       <---------ANAC46    --------->MYB52(1)                     <---------GLK1(1) --------------WRI1    <---------ANAC58   ------->GAMYB                          ------->TEIL >GLK1(2)      --------->GLK1(2)         <---------MYB52(2)      <---------YAB1 <---------GLK1(2) >CCA1(2)  >>>>>>>>>TBF1            --------->YAB1           <---------DAG2     <---------CCA1(2) ------>HSFB2a(1)      <---------ANAC58<-----------GT1       <----------DOF2<---------ANAC58 -------HSFC1(2) --------->ATHB12   <---------ICU4    ------->TEIL          <---------ANAC58   agctaccaaagaagaagaatcaatggcgagaacgagaattataacgaaccgatttgaatctcgctttttgattcgtttccttgaatctccgactctattc  19512200                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                            <---------LBD16                     <---------GLK1(1)                            ------>ZmHOX2a(2)                     --------->GLK1(1)                        ----------->HVH21                    <---------ARR11(3)                       <---------MYB52(1)                    --------->ARR11(3)                      --------->LBD16                    <---------AGP1                        <---------LBD16                    <-----------ARR10                  --------->MYB46(3)                    --------->AGP1                     --------->HSFC1(2)                    --------->ARR14(2)                 <---------HSFC1(2)                     ------>ZmHOX2a(1)                    <---------ARR14(2)                --------->SPL7                --------->At4g35610                   <---------CCA1(2)                  ------->TEIL===================================HOX2a_HOX2a                 <---------HSFB2a(2)                 --------->ARR14(2)             <---------At4g35610                 --------->HSFB2a(2)  --------->TOE2(2)<---------HSFB2a(1)   --------->ARR14(2)        <-----------GT1               --------->TOE1(2)--------->HSFB2a(1)   ------->TEIL    --------   gcctcttgtttcacgagttccagatctcttcaaaccctagcctacgaagaagtccgaacctccggtgatcgggagtctgaatctacagctctcatccttc  19512300                     --------->ZAT2                     <---------ZAT2                 --------->RAP2.6(2)                 --------->ANAC58                                                --------->ANAC58                 --------->ANAC58                                                --------->ANAC58               <-----------HVH21                                                <---------ZAT18            <---------LBD16         <-----------GT1                           <---------SPL7          --------->ARR14(2)  ------>ZmHOX2a(2)                             <---------------AtSPL3        <---------DEAR3(2)   <------ZmHOX2a(2)                              --------->HSFB2a(2)       <---------TOE1(2)    <---------ARR11(3)                         <---------At4g35610      ------>ZmHOX2a(1)    <---------GLK1(1)                        ------>ZmHOX2a(1)      ==============================HOX2a_HOX2a                 --------->ARR14(2)      ===============================HOX2a_HOX2a              <-----------HVH21 --------->SPL7 ->TOE2(3)<---------ARR14(2)--------->ARR11(3)       --------->At4g35610    <---------HSFB2a(2) -----   atggcctcctcggttccggtcgcaactggagatcgttttctcgctcccttgcatcatctctctccgtctcctctgcttctggtacgcttctctctgtgat  19512400                                                                                                   --                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                     ================                                                                                ------>ZmHOX2a(2)----                                                                               --------->At4g35610<--                                          <---------ANAC46                     <---------At4g35610---                                          <---------ANAC58                    <---------AGP1    -----                                          <---------ANAC58                 <---------WOX13(1)   <---- <---------ARR11(3)                   <---------ANAC58                     <--------P<------ZmHOX2a(1) --------->ARR14(2)                   <---------ANAC46              --------->ARR11(3)--------->ARR14(2) <---------ARR14(2)                   <---------ANAC58              <---------ARR11(3)<---------ARR14(2) --------->ARR11(3)                 --------->ARR11(3) <---------YAB1    <---------MYB46(3)    ------ ---->ICU4<----------DOF2  --------->ATHB12    <---------ZAT14  <---------At4g35610  ================   tagtatcttgagcttttcatttgatatatcgattgaaatttcttgtgtgtgtacattcagattggaagatgatattggttgatctgaggaaccatgggag  19512500        --------->ALFIN1   --------->LBD16 <---------LBD16 --------->At4g35610 ---->ZmHOX2a(2) ----->ARR11(3) ----->ARR14(3) ------ARR14(3) ----->ARR14(2) ------ARR11(3) ------ARR14(2)                                                   <------MYB46(1)               <---- ====HOX2a_HOX2a                    ----------->GT1       --------->At4g35610                -------- ----->AGP1                       ------>ZmHOX2a(2)       <---------At4g35610              <---------ANAC58 ----ZmHOX2a(2)                   =========================HOX2a_HOX2a           <---------ANAC46 ------>CCA1(2)                 --------->ARR11(3)  <------ZmHOX2a(1)   --------->ANAC58   <--------- ---->GLK1(1)                   <---------ARR11(3)<---------TOE1(3)     --------->ANAC58   <---------ANAC58 -----GLK1(1)           --------->LBD16           <---------TOE2(3)   ---------->DOF2      ---------- ----->ARR10            ------>NtERF2         <---------At4g35610 <------MYB83   <---------ANAC58 =====HOX2a_HOX2a      --------->ANAC46       --------->At4g35610 ----------->GT1<---------ANAC58 ---   atctgcggaagtggaagggcttaatccgcctcatgatcttgtgaattcagctaaggatttagctgatttggttaaagcaagtggctggaattggcctgat  19512600  Previous    Next  AGI:  At3g52565.1    Description:  pre-tRNA. tRNA-Leu (anticodon: TAG) Range:  from: 19511966    to: 19512045    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g52570.1    Description:  similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G10030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15880.1); contains domain PTHR10992:SF17 (PTHR10992:SF17); contains domain PTHR10992 (PTHR10992); contains domain SSF53474 (SSF53474); contains domain G3DSA:3.40.50.1820 (G3DSA:3.40.50.1820) Range:  from: 19512108    to: 19513977    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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