Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                             --------              --------->ATHB51           <---------TOE2(3)                                  <--------              <--------ATHB1            --------->YAB1                                      ---------              <---------ICU4            <---------ICU4                                      ---------              <---------AHL20(2)       <---------ATHB51                               --------->ANAC46              --------->AHL20(2)     --------->YAB1                                   --------->ANAC58             <---------ATHB51  --------->HSFB2a(2)                                    --------->ANAC58             <---------ATHB12  <---------HSFB2a(2)           ----------->HVH21        --------->AtLEC2 ---------GLK1(2)           <----------DOF2     <----------DOF2        --------->TOE2(3)   --------->bZIP60(2)   ttgattcttcattcaataatttgttttagacttttggaacaataatgtttctttgtttttgctatgacatctacattaacaaatagacatgcaacgtcaa  19511600                                                 --------->AHL20(2)                                                 --------->YAB1                                              --------->YAB1                                            <---------AHL20(2)        <---------YAB1                      --------->AHL20(2)            --------->ZAT18      --------->YAB1                        <---------YAB1        ------->TEIL ---WRKY12                  <----------DOF2--------->TOE2(3)      --------->ARR11(3) ->DOF5.7(2)          <-----------GT1      --------->YAB1        <---------CCA1(2) ---HVH21   <---------AHL20(2)       --------->YAB1          <---------ANAC46 >TOE1(3)   --------->AHL20(2)    <---------GLK1(1)         <---------ZAT2<---------ZAT18           < >TOE2(3)--------->YAB1<-------TEIL  <-----------GT1        <---------At4g35610    <----------DOF2  -   ctattgaactataataaaatcaatatacatctttagaaatcacaatattaataaaaatttgcagcttgtatcttggtgggctagacttttggatgatttt  19511700                                                                                               <-----                                                                                           <---------ANAC55(1)                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                           --------->ANAC55(2)                                                                                           <---------O2                                                                                      <---------ICU4                                                                                    <---------TOE2(3)                                                                                   --------->YAB1       --------->AHL20(2)                                                          <---------ICU4 <--       <---------AHL20(2)                                          <---------ARR14(2)--------->ICU4 ---------At4g35610                                      <---------LBD16        --------->YAB1<------ -------->At4g35610              <-------TEIL     <----------DOF2  --------->ARR14(2)<---------YAB1   tcagatgatttatatatgcaatgtattcgtatagtttcatggttcaattagtcttttttctcgggtcaatattcgcatagattaataatgtttacgtggg  19511800                                                                                            <--------                                                              <-----------GT1               ---------                                                              --------->ANAC46       --------->ICU4                                                        <---------YAB1             --------->AHL20(2)                                                      ----------->GT1             <---------AHL20(2)                                                      --------->YAB1              --------->AHL20(2)                                                     <---------YAB1           --------->AHL20(2)        <---------YAB1                               ----------->GT1          <---------AHL20(2)-----   --------->WOX13(1)                              --------->YAB1            --------->AHL20(2)<----- ----DEAR3(2)                                  <---------AHL20(2)       ------------>CBF   <--------- -----TEIL                                     --------->AHL20(2)      <-----------GT1   <---------AHL20(2) ---TOE1(2)                      <-----------GT1   <---------ICU4    --------->AHL20(2)  <---------YAB1   ttcatcaattactatcaacttgtatgcatgctaaattacaccattgaaattaaaaatgataaatacaccattttaacaatttaaataatttttaattgta  19511900                                                                                             --------                                                                                             xxxxxxxx                                                                                         <------NtERF2                                                                                         --------->ATERF1(1)                                                                             xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             <---------AtMYB61                                                                            xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   <---------MYB52(1)   ------>NtERF2                                                                   xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  *TSS    <------NtERF2 ----------->RAV1(1)                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                        <---------------AtSPL8                    xxxxxxxxxxxxxxxx>smallRNA(s)                        --------------->AtSPL8                    xxxxxxxxxxxxxxxxx>smallRNA(si3)             --------->ARR14(2)                                   xxxxxxxxxxxxxxxx>smallRNA(i)------- -------AtSPL8       ----------->GT1                              xxxxxxxxxxxxxxxx>smallRNA(fl3) xxxx ------>AtSPL8     <------------CBF       ---------->DOF2         xxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->CBF --------->GLK1(2)         --------->TOE2(3)     ----------->HVH21       xxxxxxxxxxxxxxxx ------GT1   ------->TEIL          <---------AHL20(2)      --------->At4g35610    xxxxxxxxxxxxxxxxxxx ---CBF      <---------ARR14(2)    --------->AHL20(2)      <---------At4g35610--------->ZAT18<-------   caattttgaagtctgaatctgaattgtaagtactaaattaaacttaaagagtcatataaacatctgacagtttggccgagtggtctaaggcgccagattt  19512000                        xxxxxxxxxxxxxxxx>smallRNA(i)                       <-------TEIL                      xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxxxx>smallRNA(si3)                    <---------DEAR3(2)                   <---------TOE1(2)                  <------NtERF2        ------------>CBF                  xxxxxxxxxxxxxxx>smallRNA(se3)                  --------->ALFIN1 --------->At4g35610                <---------ANAC46   <---------ZAT2                <---------ANAC58   --------->ZAT2             xxxxxxxxxxxxxxxx>smallRNA(s)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                <--          ---------->DOF2      ----------->RAV1(1)                                                ---        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        ---        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       ---        xxxxxxxxxxxxxxxx>smallRNA(fl3)<-----------HVH21                                      <-------TEIL       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                 <-------       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 ---------      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  --------- ->ARR14(2) xxxxxxxxxxxxxxx>smallRNA(se3)                                                ----------->ARR10 xxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(s)     ---------->ID1           <------NtERF2 -->CCA1(2) xxxxxxxxxxxxxxxx>smallRNA(se3)           <-----------GT1        <-----------GT1--------->ARR11(1) xxxxxxxxxxxxxx>smallRNA(fl3)  <---------ALFIN1<----------DOF2    <---------TOE1(2)  --------->LBD16 x>smallRNA(le3)<---------ANAC58   <---------At4g35610  <----------DOF2     <---------AHL20(2)    <-- x>smallRNA(fl3)--------->ALFIN1 <---------ALFIN1<------------------------ANAC81    --------->DEAR3(1) --ARR14(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------------------------ANAC81      <---------LBD16---   aggctctggtccgaaagggcgtgggttcaaatcccacagctgtcaattccttttttttcttttgttccttcgttttatttacttcgccggagagattcga  19512100        *TSS    ---------->DOF2 -------->P -------At4g35610 ------>At4g35610 ------>ZAT2                                ------->TEIL                               ------>NtERF2 ------>HSFC1(2)       <---------ANAC58    --------->MYB52(1)                     <---------GLK1(1) --------------WRI1    <---------ANAC58   ------->GAMYB                          ------->TEIL >CCA1(2)      --------->GLK1(2)         <---------MYB52(2)      <---------YAB1 <---------GLK1(2) >GLK1(2)  >>>>>>>>>TBF1            <---------ICU4           <---------DAG2     <---------CCA1(2) -------HSFC1(2)       <---------ANAC46<-----------GT1       <----------DOF2<---------ANAC58 ------>HSFB2a(1)--------->ATHB12   --------->YAB1    ------->TEIL          <---------ANAC58   agctaccaaagaagaagaatcaatggcgagaacgagaattataacgaaccgatttgaatctcgctttttgattcgtttccttgaatctccgactctattc  19512200                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                            ===================================HOX2a_HOX2a                     <---------GLK1(1)                            <---------LBD16                     --------->GLK1(1)                        ----------->HVH21                    <---------ARR14(2)                       <---------MYB52(1)                    --------->AGP1                          --------->LBD16                    <-----------ARR10                     <---------LBD16                    --------->ARR11(3)                 --------->MYB46(3)                    <---------ARR11(3)                 <---------HSFB2a(1)                    --------->ARR14(2)                 <---------HSFC1(2)                    <---------AGP1                    --------->SPL7                          ------>ZmHOX2a(1)                   <---------CCA1(2)                  ------->TEIL------>ZmHOX2a(2) --------->At4g35610                 <---------HSFB2a(2)                 --------->ARR14(2)             <---------At4g35610                 --------->HSFB2a(2)  --------->TOE2(2)--------->HSFB2a(1)   ------->TEIL    --------        <-----------GT1               --------->TOE1(2)--------->HSFC1(2)    --------->ARR14(2)   gcctcttgtttcacgagttccagatctcttcaaaccctagcctacgaagaagtccgaacctccggtgatcgggagtctgaatctacagctctcatccttc  19512300                     --------->ZAT2                     <---------ZAT2                 --------->RAP2.6(2)                 --------->ANAC58                                                --------->ANAC58                 --------->ANAC58                                                --------->ANAC58               <-----------HVH21                                                --------->SPL7            <---------LBD16         <-----------GT1                           <---------SPL7          <---------ARR14(2)  ------>ZmHOX2a(2)                             --------->HSFB2a(2)        <---------DEAR3(2)   <------ZmHOX2a(2)                              <---------HSFB2a(2)       <---------TOE1(2)    <---------ARR11(3)                         <---------At4g35610      ==============================HOX2a_HOX2a                     ------>ZmHOX2a(1)      ===============================HOX2a_HOX2a                --------->ARR14(2)      ------>ZmHOX2a(1)    <---------GLK1(1)                  <-----------HVH21 <---------ZAT18 ----- ->TOE2(3)--------->ARR14(2)--------->ARR11(3)       --------->At4g35610    <---------------AtSPL3   atggcctcctcggttccggtcgcaactggagatcgttttctcgctcccttgcatcatctctctccgtctcctctgcttctggtacgcttctctctgtgat  19512400                                                                                                   --                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                     ================                                                                                ------>ZmHOX2a(2)----                                                                               <---------At4g35610<--                                          <---------ANAC58                     --------->At4g35610---                                          <---------ANAC58                    <---------AGP1    -----                                          <---------ANAC46                 <--------P================ <---------ARR14(2)                   <---------ANAC46                     <---------WOX13(1)   <---- --------->ARR14(2)                   <---------ANAC58              --------->ARR11(3)--------->ARR14(2) <---------ARR11(3)                   <---------ANAC58              <---------ARR11(3)<---------ARR14(2) --------->ARR11(3)                 --------->ARR11(3) <---------YAB1    <---------MYB46(3)    ------ ---->ICU4<----------DOF2  --------->ATHB12    <---------ZAT14  <---------At4g35610  <------ZmHOX2a(1)   tagtatcttgagcttttcatttgatatatcgattgaaatttcttgtgtgtgtacattcagattggaagatgatattggttgatctgaggaaccatgggag  19512500  Previous    Next  AGI:  At3g52565.1    Description:  pre-tRNA. tRNA-Leu (anticodon: TAG) Range:  from: 19511966    to: 19512045    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g52570.1    Description:  similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G10030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15880.1); contains domain PTHR10992:SF17 (PTHR10992:SF17); contains domain PTHR10992 (PTHR10992); contains domain SSF53474 (SSF53474); contains domain G3DSA:3.40.50.1820 (G3DSA:3.40.50.1820) Range:  from: 19512108    to: 19513977    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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