Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                         <----------DOF2                                                           <---------WOX13(1)           <---------DAG2                                                         --------->ATHB12             ------->TEIL --                                               <---------ZAT18                      --------->ZAT14<-                         <---------YAB1        --------->ZAT14                      <---------ZAT18<-                <----------DOF2                <---------ZAT14                      <---------ZAT14<-             --------->ANAC58       --------->ATHB12    <---------YAB1            --------------->AtSPL8             --------->ANAC58      <---------YAB1  <----------DOF2         ------>ZmHOX2a(1) <-------   aggccttggtaatgcaagctttattttctgatttttgatgatttggctgtgaacttttgtgattgattttttagttcctgtttcagtgtacctttctttt  19497700              <---------YAB1            --------->YAB1            --------->ATHB12           --------->ICU4 ---------------AGL15                                                                         <------ -------------->AGL15                                                                      <---------ZAT6 ----------------AGL3                                                                    <---------ANAC55(2) ----------------AGL1              ----------->GT1                                     --------->ZAT14 ------------->AGL15            <------MYB46(1)                                        <---------ZAT14 ----------------AG             <------MYB83                                          --------->WRKY18(1) --------ANAC58               <--------P                 ---------->DOF2            --------->WOX13(1) --------ANAC58               --------->ALFIN1         --------->ANAC58 ------>ZmHOX2a(1)--------->ANAC55(2) ---DOF2<------ZmHOX2a(1)  <---------TOE2(3)           --------->ANAC58<---------YAB1<-----------HVH21   tgcttaaataggaatgatgagaagcctatgaggtagggagtttattttcttcagagcaagaaagcttcaaattcctattggtttatcagtcaagtgttac  19497800                            <-----------GT1                         --------------->AtSPL8       --------->At4g35610                        ----                    --------------------->WRI1--------->ICU4 ---------->DOF2                    -----    <----------DOF2 ----------------------->TaNAC69(2)<---------ZAT2               --------------->AGL15  <------------------------ANAC81 <---------DAG2      <---------GLK1(1)      <-----------RAV1(1)<---- <-----------GT1    <----------DOF2    <----------DOF2--------->ZAT2     <---------DAG2         ----- -----GT1       ---------->ID1    <----------DOF2     <---------At4g35610<----------DOF2   ----------   atttttcttttctctcttggctctttgttcttaccacttttctttgacataatgggagctcagaacagcgaatgactttttgttgccacaagttggaaaa  19497900  <-------GAMYB <-----------RAV1(1)                                          ------>ZmHOX2a(2)                   --- ----->RVE1(1)                                              --------->ARR11(3)                    --- ---->ARR11(3)                                              <---------ARR11(3)      <---------At4g35610 -----ARR11(3)                                            <---------YAB1            <---------ZAT2--- ---->GLK1(2)    <----------DOF2                          --------->ICU4            --------->At4g35610 ->GT1  --------->WOX13(1)                              --------->YAB1    <---------ICU4         <---   tctctgttgtcaattacctctttgtctgtttgcaaatgagagtaattgcagaagttagtcatgatcccgttcttactaattgtcttagctgctagagaac  19498000         <-----------GT1    <---------DAG2   --------->HSFB2a(1)   <---------HSFB2a(1)                                                <------ZmHOX2a(1)          ---- --------->ARR14(2)                                                 --------->TOE1(1)          <----- <---------ARR14(2)                                               --------->TOE1(2)   <---------ARR11(3) ------>ANAC58                       <------ZmHOX2a(1)   --------->ANAC58             --------->ARR11(3) ------>ANAC46                    <-----------RAV1(2)    --------->ANAC46          --------->AHL20(2) ------>ANAC58                    <---------LBD16        --------->ANAC58 ----------->HVH21   <------ ------LBD16                <------------CBF--------->YAB1        --------->TOE2(2)<---------AHL20(2)   tcggaaccttttatcgtttcacatatatgagattgttcaggagcatgcataagactcacaagtcacaacctaggacttgacatattaaaatcttttgatg  19498100                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                <----                                                         <---------ZAT14                     <-------                                                       --------->ANAC46                     <-------TEIL                                          <---------ANAC46   ---------->DOF2              --------->TOE2(2)          --------->At4g35610          ------>ZmHOX2a(1) --------->ZAT14                <-------TEIL       *TSS                    --------->ANAC55(2)  --------->ZAT14                 --------->ANAC58      --------->GLK1(2)        <---------ANAC55(2)  <---------ZAT14                 ----------->GT1-- ------->HVH21              <---------ARR14(2)      --------->ZAT18            <----------ID1<------- ----REM1(1)                --------->GLK1(2)   <---------------AtSPL8  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---TOE2(3)    ------->TEIL --------->ARR14(2)<-----------RAV1(1)    ---------->DOF2--------->ANAC58   taacagagactctgatgcatttgatttgagaatacgtcttcctgccctgtgttgtacactgtacaaagctattaagcgaaatggacaagttacatacgtg  19498200                                       <-----------RAV1(1)                                  <---------ANAC46      --------->At4g35610     <-------GAMYB --------->ZAT14             <---------MYB46(3) <---------ZAT14             <-----------RAV1(1) ---->ZAT14               ------>ZmHOX2a(1) -----ZAT18             ===========================RAV -----ZAT14             ----------->RAV1(2)                                        <---------AHL20(2) ---->ZAT18             <---------At4g35610                                    <----------DOF2 ---TEIL--------->HSFB2a(2)<---------At4g35610                                 <---------DAG2 --ANAC58               =================RAV                              <-----------GT1 ------->ANAC46        <---------ATERF1(1)  <---------HSFB2a(2)      <----------DOF2 <---------YAB1 --ANAC58       <------ZmHOX2a(1)<---------LBD16        <---------At5g28300---------->ID1           <   cactgaactgctggaataggaagggctcctgctgttgcggtatgttgcagaaacctgttactgtctcttctctttttctccctttttatttttgtagcac  19498300                                                                                 <-------GAMYB    ---                                                                    <------MYB46(1)               <--                                                                    <------MYB83<-----------RAV1(1)              <----------DOF2                  --------->YAB1       ----------->GT1               <-- ----------DOF2  --------->YAB1          --------->HSFB2a(2)       --------->MYB59           <-------   atctttcattgtgagtctttcatgagcgtagatgtattggtttccagtatcaaaacaacattttttagttcggtttataagactgttgcaaacagtagtt  19498400                            <---------TOE2(3)                       <---------WRKY18(1)                      --------->WRKY38(1)       <---------------AtSPL3                                    <---------YAB1       --------------->AtSPL8<---------ATHB12            <---------At4g35610                  ------- -------->GT1        <---------WOX13(1)             <----------DOF2                         <-------GAMYB -------ANAC46      <-------GAMYB               --------->WRKY38(1)                         <-------- -------ZAT6       <---------MYB46(3)        --------->ALFIN1    <---------TOE2(3)          --------- --MYB46(3)     <----------DOF2     <---------KAN4(2)    --------->At4g35610     <---------ZAT6     <   gtgttaatatttgtacttctttggttgactaatgaaggaatgaacaagtgttgacttttggctgactaacattgagaagagtagttttagtttcagttga  19498500        --------->HSFB2a(2)        <---------ANAC46                                                                            -        <---------HSFB2a(2)                                                                         -       <---------LBD16                          <---------ANAC55(2)                                 < ---->HVH21                                     --------->ANAC55(2)                           <------ -At4g35610                           <-------TEIL                                            ------- >At4g35610                    --------->HSFB2a(2)                            <---------REM1(2)     < -------TEIL  <---------AtLEC2 <---------HSFB2a(2)               ------>ZmHOX2a(2)      --------->TOE2(3)   catacatgttctgggtgcaaggctataaaacttatggaagttcatgaattacttattctacttctgatctatgttctctctacatggttaccttgatatc  19498600  Previous    Next  AGI:  At3g52535.1    Description:  other RNA Range:  from: 19498107    to: 19499534    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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