Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ----------------->AGL3                                                                           ------>MYB46(1)                                                                           -------->P                                                                           ------>MYB83 ----------->GT1                                                  <---------ALFIN1         --------->ANAC46    <----------DOF2                           ------->GAMYB   =================HOX2a_HOX2a ---------MYB52(1)                           <---------MYB52(2)         ------>ZmHOX2a(2) ----------- -------ANAC58             <---------YAB1 --------->ANAC46    ------>ZmHOX2a(1)      <---------At4g35610 -------ANAC58         ----------->GT1  <-----------GT1      --------->TOE2(3)       --------->At4g35610 -->ARR11(3)      <---------YAB1        --------->ANAC46  --------->ARR11(3)<---------ATHB12 ---ARR11(3)   <---------AHL20(2)     <-----------GT1     <---------ARR11(3)--------->MYB46(3)   tcgtttctttggatgattttatgaatagtataatacaaatttacacaactcaccacataatatcctttgtatgatccaaccaatttcagatggagaaaat  19432000           <---------ARR14(2)           --------->ARR14(2)           <---------ARR11(3)           --------->GLK1(2)    <---------ANAC46                                                                   --------->ANAC58    <---------ANAC58                           --------->MYB52(1)                      --------->ANAC58    <---------AtLEC2                       ------->TEIL  <---------ZAT14               --------->ANAC46    <---------ANAC58   --------->ANAC46    <---------AGP1--------->ZAT14           --------->YAB1 >GT1      --------->ARR11(3)---------->DOF2 ------>ZmHOX2a(2)            --------->ARR14(2)   atagttgcatgagtatctacaatctaagacacaaagacatagatggatctaagggagactgaactcttgtataatggattcacaatcacaagaaacaagg  19432100                             --------->At4g35610                        <-----------GT1                    --------->ICU4                    <---------YAB1                --------->TOE2(3)     ------->TEIL       <---------YAB1                        <-----              <---------TOE1(3)<----------DOF2 <---------KAN4(2)  <---------MYB59    <---------GLK1(2)              ------->TEIL   <---------At4g35610       --------->YAB1--------->GLK1(2)   <----------DOF2   agagaaacacaaattgaacgttattatttccagcttaatggacttgaagaatgaccatcatgtttgtgcctaatctgattttctccaaattctttagaat  19432200                                                                                             --------                  ===================================================================================                  --------------->AGL15                                                      <-------                 ----------------->AGL1                                                      <-------                 ----------------->AGL2                                                  ------------              ------>ZmHOX2a(1)                                --------->MYB52(1)     <-----------GT1   <----------DOF2<---------------AGL15<---------AHL20(2)      --------->YAB1   ------------>CBF ----GLK1(1)<---------ICU4      <-----------GT1   <---------TOE1(2)            <-----------GT1    <--   tctctctttgctaatcctgaccaatatgagaaattcaccatttttttgctcataggtgctatcaataacagtttcaagtttcaacaattcaccatttata  19432300                                                         <-----------GT1                                                    --------->AHL20(1)                                                    <---------AHL20(1)                                                    <---------AHL20(2)         --------->MYB46(3)                         --------->AHL20(2)                           ----        ------>MYB46(1)                  --------->AHL20(2)                                     <----       ----------->RAV1(1)               --------->AHL20(1)                                    ------ ->AHL20(2)                              <---------AHL20(1)                                    ------ ====MADS_MADS               <---------ICU4      --------->YAB1                                <----- --AHL20(2)      --------->ZAT6          <---------AHL20(2)                *TSS <---------YAB1 <----- ----TBP------>MYB83      --------->YAB1 <---------ARR11(3)         <----------DOF2           <------ZmHOX2a(1) --->AGL15------->GAMYB  >>>>>>>>>MYB98  --------->ARR11(3)         <---------DAG2        --------->ICU4 ---------GT1  ----------->RAV1(1)      --------->AHL20(2) --------->YAB1 <---------AHL20(2)---------   taacattaccaacagtccaacactagtaacataatcaccaaaatatattagtaataaattttcatcacagctttatatttttgtgattagaaattaggat  19432400      --------->ARR11(3)      <---------ARR11(3)     <---------GLK1(1)     --------->GLK1(1) <---------HSFB2a(2) --------->HSFB2a(2) -->ZmHOX2a(2) --ZmHOX2a(2)                                                                                  <----- --->ARR14(2)                                                                         <---------AHL20(2) --->ARR11(3)              --------->MYB52(1)               <---------AHL20(2)   <---------AHL20(2) ----ARR11(3)           --------->YAB1                --------->YAB1        <-------TEIL     -------- ----ARR14(2)          <-------TEIL                  <-------TEIL   ----------->GT1  --------->YAB1 >MYB59           --------->AHL20(2)   <---------AHL20(2)   --------->AHL20(2)------->TEIL<---------REM1(1)   cttacagaaatctttcaaaaaaaaattcataacagttccattttttttggtaagattcataaaaaaattcaagttaaatgcattttataaaaatgtagga  19432500                                                                     ---------->DOF2                                                                   <------NtERF2                                                                  --------->LBD16                                                                 --------->ANAC46                 <--                                                                <-------MYC3                      <--                                                                ------->MYC3                     <---                                                               <---------O2                      <---                                     <---------ARR11(3)        --------->ANAC46                  ----                                     --------->ARR11(3)        --------->O2                      ----     --------->YAB1                 <---------CCA1(2)         <---------LBD16       ================= -ZmHOX2a(1)                    ----------->GT1              <---------ALFIN1       <----------DOF2<- --->GT1                      <-------TEIL              ------>ZmHOX2a(1)<----------ID1          ----   aaaactttcatcaaaaatcgttgagaagaacatacagtatatcttatccactctcttcctcatccacgcggcaaaggcacaaacctctttagaaaaatgt  19432600                                           <---------ALFIN1                                           --------->DEAR3(1)                                          <------NtERF2                                         ------>NtERF2                                        <---------ALFIN1                                       --------->MYB46(3)                                       <---------MYB55(2)                                       --------->ATERF1(1)                                       <---------ABI4(2)                                      --------->At4g35610                                      <---------ATERF1(1)                                      ------>NtERF2                                    --------->ATERF1(1)                                    --------->ERF1                                    <------NtERF2                                    --------->RAP2.3(1)                                   ------>NtERF2                                   --------->At4g35610                                   <------NtERF2                                   <---------At4g35610                                   --------->ABI4(1)                                 --------->RRTF1(1)                                 --------->RAP2.3(1)                            ------->TEIL--------->DEAR3(1)    <----------DOF2                            --------->ARR14(2)               --------->TOE2(3)                            <---------ARR14(2)          ------>NtERF2                    --------->LBD16<---------ATERF1(1)  --------->At4g35610                   <---------O2 --------->At4g35610    --------->DEAR3(1)                   --------->DEAR3(1) <---------At4g35610<---------MYB52(1)  <---------At4g35610      <---------CCA1(2)           --------->RAP2.6(2)  <---------ZAT2   <---------ANAC46--------->LBD16     --------->RRTF1(3)  --------->At4g35610--------->ALFIN1--------->DEAR3(1)--------->RAP2.3(2) ---------HVH21    --------->O2 <---------ATERF1(1)   --------->RAP2.3(1) ---------TGA1     --------->TGA1a--------->RRTF1(2) <---------ATERF1(1) ------bZIP60(1)   <---------TGA1a--------->DEAR3(1) ------>NtERF2 ------ETT(2)    --------->LBD16--------->LBD16     --------->DEAR3(1) ----->TGA2(1)  --------->DEAR3(1)--------->RAP2.3(2)--------->LBD16                 --------->ANAC46 ----->bZIP60(1)--------->ANAC46------>NtERF2       --------->ANAC46                 --------->ANAC58 ============================bZIP_DOF--------->RAP2.3(3)<---------At4g35610          --------->ANAC58 --------MYB52(1)------>NtERF2--------->MYB46(3)    <---------ALFIN1               <---------ALFIN1 ----->ETT(2) ------>ZmHOX2a(1)--------->ANAC46   ------>ZmHOX2a(1)             ------>ZmHOX2a(1)   cgtcagcttattgttcctccgccgtggctgtatccgccgcagccaccgcttcctccgccgctacctttaatccattactctcctcccactccaattccca  19432700                                                                                        <----------DOF2                                                                                     <---------ALFIN1                                                                                     --------->DEAR3(1)                                                                                    <------NtERF2                                                                                   ------>NtERF2                                                                                 ----------->HVH21                                                                                 --------->ATERF1(1)                                                                                 <------NtERF2                                                                                 --------->ERF1                                                                                 <---------ABI4(2)                                                                                 --------->MYB46(3)                                                                                <-----------HVH21                                                                                --------->ABI4(1)                                                                                ------>NtERF2                                                                               --------->ANAC46                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                               <---------ATERF1(2)  <                                                                               --------->DEAR3(1)   -                                                                               --------->RAP2.3(2)  -                                                                               --------->RAP2.3(3)  -                                                                               --------->RRTF1(3)  --                                                                               --------->RAP2.6(2) <-                                                                               --------->RRTF1(2)  --                                                                               --------->DREB2C(2) --                                                                              --------->ATERF1(1)  --                                                                              --------->RRTF1(1)   <-                                                                              --------->RAP2.6(1) ---                                                                              --------->ORA47(2)  ---                                                                              --------->RAP2.3(1) ---                                                                              --------->ERF1      ---                                                                             <---------ATERF1(1)  <--                                                                             --------->At4g35610  ---                                                                             ------>NtERF2        ---                                                                             --------->LBD16     <---                                                                            --------->ANAC46     ----                                                                           --------->MYB46(3)    <---                                                                         --------->ARR14(2)      <---                                                                         <---------ARR14(2)     -----                                                                        <---------GLK1(1)       <----                                                                        --------->GLK1(1)   ---------                                                                        --------->RVE1(1)   <--------                     <---------ARR11(3)                           --------->ANAC58<---------ALFIN1---                --------->ANAC46                                  --------->ANAC46--------->DEAR3(1)-              --------->ANAC46                                    --------->ANAC58--------->AtMYB61--          <---------DAG2                                        <---------ALFIN1<---------ATERF1(1)--          <----------DOF2------>ZmHOX2a(1)  --------->ZAT18   ------>ZmHOX2a(1)--------->ATERF1(2)---   actcttctatcgctttacaccaaaatccttcaaactcgttgccaattgccctaatccactaatcctccactcaaatatccgccgccaccgcttcttctgc  19432800     --------->ARR14(2)     <---------ARR14(2)  --------->RAP2.6(2)  --------->DEAR3(1) --------->RAP2.3(1) <------NtERF2 ---------ATERF1(1) -------->LBD16 -------->At4g35610 ----->NtERF2 ------->RAP2.3(2) --------DEAR3(1) ------->RAP2.3(3) ------->RRTF1(3) ------->RRTF1(2) --------ATERF1(2) ------>ERF1 ------>DEAR3(2) ------>DEAR4(2) ------>RRTF1(1) ----NtERF2 ------>ATERF1(1) ------>RAP2.6(1) ------RRTF1(1) -->NtERF2 ------ATERF1(1)                <---------GLK1(1) ------RAP2.3(1)                --------->GLK1(1) ---->ANAC46               --------->YAB1 -----DEAR3(1)            --------->ICU4 -->RAV1(2)               <---------ATHB12 -At4g35610            --------->DEAR3(1) ------>RAP2.3(1)    <---------At4g35610 -------->ABI4(1)    --------->LBD16                                            <---------REM1(1) ------->ATERF1(2)   ------>NtERF2                                            --------->At4g35610 ------->DEAR3(1)<---------ARR14(2)   --------->ANAC46 >>>>>>>>>TBF1        <------ZmHOX2a(1) ------>ORA47(2) --------->ARR14(2)  --------->LBD16>>>>>>>>>TBF1     >>>>>>>>>TBF1        >>>>>>>>>TBF1   gccgccgaaaccgaagctagttccgccgatgatgaaatccaggcatcagtagaagaagaagaagaggtagaagaagaaggagatgaaggtgaagaagaag  19432900  Previous    Next  AGI:  At3g52380.1    Description:  CP33 (PIGMENT DEFECTIVE 322); RNA binding. similar to 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative [Arabidopsis thaliana] (TAIR:AT2G37220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67026.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 19432375    to: 19434075    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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