Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------->ANAC46     <---------ICU4                                                           ------->GAMYB    <---------YAB1                   ----------->GT1                         <---------MYB52(2)    --------->ICU4                   <---------ZAT6                          --------->MYB46(3) ----->ZmHOX2a(2)          <---------ANAC46                             --------->ZAT6        <------ -----ZmHOX2a(2)           <---------ANAC58                        <---------HSFB2a(2)        ------- -------ARR11(3)           <---------ANAC58                        --------->ANAC55(2)        ------- ------>ARR11(3)     <---------ARR14(2)                            --------->HSFB2a(2)       -------- -------AGP1         --------->ARR14(2)                            <---------ANAC55(2) --------->ZAT2 ------CCA1(2)       --------->GLK1(2)         <----------DOF2  <---------ARR14(2)   <-------PIF5 -ZAT6       --------->GLK1(1)      <---------TOE1(3)           --------->ARR14(2)   ------->PIF5   gatctcattatgggcaattccacaatctgccttgtgctagggttacaaactttcactcttctcccagttctgtaacacaacaaaccacgagcagcgttca  19414800          <---------------AGL15          --------------->AGL15         <-----------------AGL3         <-----------------AG         <-----------------AGL1                                                         <---------WOX13(1)         <-----------------AGL2         --------->YAB1                                --------->ATHB12         ----------------->AGL1      --------->WOX13(1)                              --------->ICU4     --------->ATERF1(1)           --------->WRKY18(1)                               <---------YAB1 ---ZAT14----------------->AGL2  <------MYB46(1)                  <---------ICU4   --------->YAB1 -->ZAT18----------------->AGL3  <------MYB83     <---------At4g35610       ----------->TGA1 -->WRKY38(1)        <---------AtMYB61 <---------ATHB12         --------->ARR11(3)--------->ICU4 ->DOF5.7(2) --------->ATHB51<-----------RAV1(1)  --------->At4g35610       ----------->HVH21  ------   ctaagtagcctcccattatcggtatggtcgaatgttggtcaatcacagagacagatgtgtccgagtgatcatgcctcgatgacgatgatgattggagcaa  19414900                                 <---------ANAC55(2)                                 --------->ANAC58                          <---------MYB46(3)                                 --------->ANAC58                          <------MYB46(1)                                <-------TEIL                               <------MYB83                               --------->CCA1(2)                          <---------MYB46(3)                              <---------GLK1(2)                           --------->MYB111(2)                              --------->ARR14(2)                          <---------AtMYB61                              <---------ARR14(2)                          --------->MYB55(2)                              --------->ARR11(1)                          <---------DEAR3(1)                            --------->ANAC58                              --------->MYB46(2)                            --------->ANAC58                             <---------MYB52(1)                            ----------->ARR10                            <---------MYB55(1)                       <---------ZAT18   --------->ANAC46           --------->MYB52(1)                       <---------ETT(2)--------->MYB46(3)          --------->ARR11(1)                <-----------GT1--------->ARR14(1)              ---------->DOF2                   ---- ----->RAV1(1) <-----------GT1<---------ARR11(3)          ----------->GT1<--------P       -----------   caggtatttgctctgattttccctgtccacaagatacgcgaacaaacaacttggtgatgagggtttaaagaaacggttggtgaagtatcgagaggtgata  19415000                                                   --------->WOX13(1)                                                 <------NtERF2                                                --------->ANAC58                                                ------>NtERF2 ===============HOX2a_HOX2a       <-----                                                --------->LBD16--------->ARR11(3)        ------>ZmHOX2a(2)                                                --------->ANAC58--------->GLK1(1)       <------ZmHOX2a(2)                                  --------->At4g35610         <------ZmHOX2a(1)         --------->GLK1(1)                            ------->TEIL       --------->ATERF1(2)                     <---------ARR11(3)   --------->ANAC58        <---------GLK1(2)   --------->DEAR3(1)         <---------ICU4<---------GLK1(1)   --------->ANAC58   ------->TEIL<---------At4g35610  <---------YAB1 <------ZmHOX2a(2)--------->ARR14(2)  --------->GLK1(1)  <---------ALFIN1          <---------ATERF1(2)  --------->WOX13(1) --------->ARR11(3) ---------->DOF2   --------->ANAC58           <---------LBD16 =================================HOX2a_HOX2a ----->DAG2        --------->ANAC58     --------->ARR11(3)    ==================================HOX2a_HOX2a >GT1       <----------DOF2<---------CCA1(2) <---------RAP2.3(1)<---------GLK1(1)      <---------ARR14(2)   agggaaagccagagctttgagacgcacttgaatctcatcagagatttcgccggcaatctgattaggatatcgatcaacatttcttcagggatctctggta  19415100                                <---------DAG2         <----------ID1                                <----------DOF2      ---------->DOF2                             ---------->ID1     <---------ALFIN1                          <----------DOF2     ----------->RAV1(1)                          <---------DAG2  --------->ANAC58                  <---------At4g35610     --------->ANAC58               <---------At4g35610     ------>ZmHOX2a(1)    <---------ALFIN1 <---------At4g35610--------->MYB52(1)                    --------->At4g35610   < ---P     <------------------------ANAC81 --------->ANAC46         --------->ARR14(2)       <------ZmHOX2a(1)   agaacaccacggtcttcttctgcttctgcttttcctttttcctcacggcaacacataaagacgagcccatatttgttcgcagaagaatagagaaggagct  19415200                                              --------->DAG2                                              <---------TOE2(3)                                            ---------->DOF2                                       <--                                        --------------->AGL15                                   -----                                        <---------------AGL15                                   -----                                        --------->TOE2(3)                              <---------At4g35610                                        --------->TOE1(3)                             <---------RAP2.3(1)                                       --------------->AGL15                         <---------RRTF1(2)            <------ZmHOX2a(1)          ----------------->AGL3                        <---------RAP2.3(3)           ----------->GT1             <-----------------AGL3                        <---------RAP2.3(2)          <---------TOE2(3)            ----------------->AG                          <---------RAP2.6(2)    <---------ZAT14                    ----------------->AGL1                        <---------ANAC58    <---------ZAT18                    <---------------AGL15                         <---------ANAC46    --------->ZAT14              <---------ANAC58     <---------At4g35610            <---------ANAC58    --------->ZAT18              <---------ANAC58     --------->At4g35610           <---------LBD16 < ---------------AtSPL8      --------->HSFB2a(1)      ------->TEIL               <-----------RAV1(1) -   atagagtacactaaggaaaaaaaaactcgaacatttcgtttcccttaaaaggttgcatctccaacttgttctctctgtttgtatgttgcggctctcacaa  19415300                                                       <---------GLK1(1)      --------->ZAT2                                   --------->GLK1(1)      <---------ZAT2                                 <---------ICU4      <---------At4g35610                            --------->ATHB12      --------->At4g35610                      --------->At5g28300                               ---- -------MYB52(2)                              --------->LBD16            <---------ANAC58      ------ ---->ANAC58     <---------ANAC46            --------->ANAC46            <---------ANAC58     ------- ---->ANAC58 <------------CBF               <---------LBD16      <---------YAB1     --------->ARR11(3) ---------DOF5.7(2)                      ------>ZmHOX2a(1)     --------->YAB1       <---------ARR14(2) -------->MYB52(1)                  <----------DOF2 --------->ICU4 <------------CBF <---------GLK1(2)   gctaacgctgctgcatattgtgtaaacccttgctctctctttcctacgcggaaaatgatttccatttgtaattgggcttgttctcagattttggcccaac  19415400                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                            ---------                                                                                       ----------->GT1                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                   <---------------AGL15 <---------AHL20(2)                                                                  ----------------->AGL3 --------->AHL20(2)                                                                 --------->ANAC58      --------->ANAC55(2)                                                                 --------->ANAC58      <---------ANAC55(2)  ------------>CBF   ----------->GT1                     --------->ATHB12            <--------P     > --->GAMYB      --------->CCA1(2)                     <------------CBF         --------->CCA1(2)  --- --->At4g35610 --------->ARR11(3)                   <---------ARR11(3)        --------->ARR11(3) <--- -->MYB52(1)  <<<<<<<<<RAP2.2       --------->AtLEC2--------->ARR11(3)        <---------ARR11(3)<----   tgaattcaatgggtttagatataggctaaaaaaactgcatgcaggtccaagagagatattgactggaacccaaatatagagatattggtaagtaattaat  19415500                                               <------ZmHOX2a(1)                                    -                                   --------->ATHB12                                      <---------ZAT2                                  ====================HOX2a_HOX2a                        ============                                 <---------ARR11(3)                                      --------->At4g35610    <---------TOE1(2)            --------->ARR11(3)                                      --------->ZAT2 -->WOX13(1)                    <------ZmHOX2a(1)            --------->ANAC58            <---------At4g35610 ->AHL20(2)                 ---------->DOF2 --------->HSFB2a(2)                          ----------->RAV1(2) --AHL20(2)              --------->ANAC58   <---------HSFC1(1)                         ============== >ICU4                   --------->ANAC58   <---------HSFB2a(2)   --------->AHL20(2)   <-----------RAV1(2) >>>>>>>>>>>>>>>>LFY  ===================HOX2a_HOX2a         --------->ANAC58        <-----------HVH21 ------>WOX13(1)      ------>ZmHOX2a(1)     --------->HSFC1(1) --------->YAB1       --------->TOE1(3) ------ICU4      --------->GLK1(1)<------ZmHOX2a(2)        ---------->DOF2--------->ANAC58          - -----ATHB12     <---------GLK1(1)<---------YAB1 <-----------------AGL1   --------->ANAC58      -----   caatccaatgttctctatgaattcctcaagaaaaggatcattgtttctaggactcgatgtggaaagcataaaatataagcacttaaccttcagctgagtg  19415600                                                  <------ZmHOX2a(2)                              --------------->AGL15                              <---------------AGL15                             <-----------------AGL2              --------->ANAC46     ----------->GT1         <-----------------AGL3              --------->ANAC58   ------->GAMYB             ----------------->AGL2     ----------->RAV1(2) ---------->RAV1(1)        <-----------GT1       <---------ARR11(3) ===========RAV         ----------->GT1          --------->ARR11(3)                          <------- ===========RAV ---------->DOF2                <---------YAB1    --------->ANAC58            -------- -------->MYB52(1)    ---------->DOF2      --------->TOE2(3)  ------>ZmHOX2a(2)          <----------DOF2 ---->ZAT18  ----------->GT1 ----------------->AGL3 --------->KAN4(2)              <-----------GT1   gccaacagcgttacaaggtaaagagaaagttactaattttagaaacattaagatcataccctgatccaagaaaacattccagttgtttccactttcgaga  19415700  Previous    Next  AGI:  At3g52320.1    Description:  F-box family protein. Identical to Putative F-box protein At3g52320 [Arabidopsis Thaliana] (GB:Q9FT50); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G62660.1); similar to Putative F-box protein, identical [Solanum demissum] (GB:AAU93581.1); similar to hypothetical protein OsJ_028422 [Oryza sativa (japonica cultivar-group)] (GB:EAZ44939.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 19413998    to: 19415170    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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