Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <---------YAB1                                   <------ZmHOX2a(2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <---------WOX13(1)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            ----------->HVH21                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <xxxxxxxxxxxxxxxxxsmallRNA(si3)                         --------->ARR14(2)                         ------->TEIL                         <---------ARR14(2)              <------------------------ANAC81                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <---------DEAR3(1)          --------->ATHB12<---------At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(i)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------ZAT2       ---------->DOF2  <---------CCA1(2) <---------ANAC46     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ANAC58   ------>NtERF2        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <-----------GT1 --------->LBD16       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <---------DAG2 -------->HSFB2a(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <----------DOF2 ---------LBD16        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------MYB52(1) ---------ANAC58   --------->GLK1(2)      <---------ANAC58 <----------DOF2 ---------ANAC58  --------->ARR11(3)--------->ATHB12   ------>ZmHOX2a(2)                           xx --------LBD16   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->GLK1(1)           <xxxxxxxxxxxxxxxxxx ------ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------GLK1(1)         <xxxxxxxxxxxxxxxxxxxx ----->ARR14(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <---------ARR11(3) <---------DAG2           <--- -----GLK1(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->ARR11(3) <----------DOF2     ---------   ttccgggcctaaagattgaagatgctgtatctgatggatcattggcttgctcggtgatctcctttacttttttgctttattttgttttgaattcgtttac  19403300                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      --------->TOE1(3)                      --------->TOE2(3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               xxxxxxxxxxxxxxxx>smallRNA(i)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxxxxxxxxxxxxxxxsmallRNA(i)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------->TEILxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxx>smallRNA(s)  --------------->AtSPL3    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              ----------->GT1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ATHB12 xxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------DOF2xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <-----------GT1                     <----------DOF2 >DOF5.7(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)------->TEIL    <---------YAB1          <---------DAG2   tttgttgaatcttccaagagtctgccttaaacttgtgaagtacttcatgaatttaactggtttatatcattggatttgttttgtttgagctttttttttt  19403400                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                               <-----                                                                                              <------                                                                                       -------->HAHB4                                                                                       --------->ATHB51                                                                                       <--------ATHB1                                                                                       --------->ATHB12                                                                                       <---------ICU4                                                                                      <---------ATHB51                                                                                      --------->ICU4                                                                        --------->DAG2<---------AHL20(2)                                                              <------MYB46(1)         --------->AHL20(2)                                                              <------MYB83           --------->AHL20(2)                                                          --------->GLK1(2)          <---------AHL20(1)               --------->TOE1(3)                         <---------GLK1(2)<-----------HVH21 <--------               --------->TOE2(3)------->TEIL        <-----------HVH21  ---------->DOF2<---------YAB1   aaactttgaaattagaaccttgaagtatttgatgaatctagttcatttgatcagtgtcagaatttggttttaaaaaagtcacatcaaaataattggggtt  19403500 --------WOX13(1)         <---------ANAC58 -------ANAC58            <---------ANAC58 -------ANAC58        <---------ANAC58 ----->ATHB12         <---------ANAC58 ------MYB46(3)  <---------ICU4          --------->ANAC46     ----------->GT1 ---P <----------DOF2<---------ICU4    --------->ANAC46   <---------AHL20(2)              <----------DOF2 -GAMYB     <---------ALFIN1  <----------DOF2             --------->AHL20(2)<----------DOF2  <------- -TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     XXXXXXXXXXXXXXXXXXXX>MIR837-3P <---------MYB52(1)   gattggctctttcccctcatcaatacttgcttcttttttatacccaaaacaaacaaacaaaaaattgttaaaaggcttctttctgtttttttcttttact  19403600                                                                                                  <xx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <----                                                                                                -----                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        <xxxxxxxxxxxxxxxsmallRNA(se3)                                                                        <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                       <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)<x                                                                      <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(le3)<                                                                      <---------LBD16        <xxxxxxx                                                                     <xxxxxxxxxxxxxxxsmallRNA(le3)<xx                                                                     <xxxxxxxxxxxxxxxxxsmallRNA(le3)<                                                                     <---------LBD16         <xxxxxxx                                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxx                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxx                                                          --------->LBD16<---------PCF5      <xxxxxxx                                                          --------->HSFB2a(2)               <xxxxxxxx                                                          <---------HSFB2a(2)   --------->ANAC58<xxxx                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxx                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)          <xxxxxxxx                                                     <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ALFIN1---                     --------->AHL20(1)              <xxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxx                     <---------AHL20(2)             <xxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ANAC58<                     --------->AHL20(2)             <xxxxxxxxxxxxxxxxsmallRNA(s)--------->ANAC58<xxxx              --------->TOE2(3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxx    <----------DOF2 --------->AHL20(2)   ---------->DOF2<xxxxxxxxxxxxxxxxsmallRNA(s)--------->ANAC58< ----GT1  <----------DOF2--------->AHL20(2)  ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<xxx   atttgacttttactttcgtcaaaaaaattaaaactttggcaaaaaaagaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaa  19403700        <xxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ZAT6   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) -------ARR10------>MYB46(1) ---->GLK1(2)------>MYB83 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxsmallRNA(se3) xxxxxxxxsmallRNA(s)<----------DOF2 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ----------->HVH21 xxxxxxxxxxsmallRNA(si3)            <------MYB83 xxxxxxxxsmallRNA(se3)    ------------>CBF      <---------AHL20(1) ------>YAB1 ---------->DOF2        <------MYB46(1) xxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->MYB59 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------WOX13(1)                               ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------AtMYB61                            --------->TOE1(3) xxxxxxxxsmallRNA(fl3) *TSS  <------------CBF----------->GT1                    --------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-------GAMYB                              <---------MYB59    <- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------MYB46(3)                     <---------MYB59   <-------   tcataccactagaccaaatgcccttttgttcaattgtttggttgacatagtatatttatcttcgacatattttgggacataacctaaactaaagtatgtt  19403800                 ------>MYB46(1)    --------->KAN4(2)   <---------HSFC1(2)                                                                              --   --------->HSFB2a(1)                                                                           <---   <---------KAN4(1)                                                                             ----   --------->HSFC1(2)                                                                           -----   --------->KAN4(1)                                                                       <---------MYB46(3)   <---------HSFB2a(1)                                    --------->GLK1(1)               --------->ALFIN1  <---------KAN4(2)         ---------->DOF2         ----------->RAV1(1)     --------->TOE2(3)  <----- --------TOE2(3) ------>MYB83            --------->ANAC46 <---------GLK1(1)--------->YAB1 <---------AtMYB61 --YAB1       --------->MYB46(3)    --------->ARR14(2)--------->ANAC46----------->GT1  <---------AtMYB61   taagaatgttcttagaaccaactaagtaacaaaagaaaaatccccacaaatttcccacagaattcttaagaatagaaacataaatggcaatggtggtgga  19403900                                    <-------MYC3                                    ------->MYC3                                 <---------ALFIN1                              <---------PCF5                         --------->ALFIN1      --------->WRKY18(1)<---------MYB46(3)     <-----------HVH21 --------->ZAT2   <---------MYB46(3)  <---------At4g35610 --------->HVH21       --------->At4g35610 ------At4g35610       <---------ZAT2 ------------->AGL1   <---------ARR14(2)    --------->YAB1        <---------ARR11(3) -->TEIL              --------->ARR14(2)    --------->TOE2(3)     --------->ARR11(3)                < ----TCP16(2)        <------ZmHOX2a(1)   <---------CCA1(2)  <----------ID1  ---------->DOF2      ----   cctgatgggtcaagagccatggaggagctggtggaccacatgtctatcttattggatgaaaaacgacaaatctttgtacaaagagcgttttgagaattga  19404000   ------>NtERF2  ------>NtERF2                                                                           --------->HSFC1(2)  --------->LBD16                                                    --------->GLK1(1)    -----------  <---------ATERF1(1)  <---------AHL20(2)                <---------At4g35610              <---------HSFC1(2) --------->LBD16       --------->AHL20(2)                --------->At4g35610     ---------->DOF2 ---------LBD16       --------->AHL20(2)   --------->AHL20(2)        <---------GLK1(1)    <---------HSFB2a(1) --->TEIL      --------->YAB1              <---------AHL20(2)<---------ANAC46---------->DOF2 <-------TEIL   accccggcctctctcattcagaaaattaatacaaatgcaaaacatataatttgtttatcaactgcttatagatttcccaaaaagaaagtagaaggttcaa  19404100                         --------->TOE2(3)                  --------------->AGL15                  --------->TOE2(3)                  --------->YAB1                -------->P                                                     <---------ANAC58              <---------MYB111(1)             ----------->GT1                  <---------ANAC58             <---------STY1(2)          <---------AHL20(2)           --------->ARR14(2)             --------->STY1(2)    ----------->GT1  --------->AHL20(2)<---------ARR14(2)    --------->MYB52(1) >GT1   <-----------GT1 <---------ICU4  --------->AHL20(2)<-------TEIL--------->CCA1(2)  <---------MYB59   caatttcatgttactagctaccataaacattaaaactggaaattaaactagaaaaaaatgttcatttcatggatatgaattgcttctgtagcctaactgg  19404200  Previous    Next  AGI:  At3g52285.1    Description:  pre-tRNA. tRNA-Pro (anticodon: AGG) Range:  from: 19403652    to: 19403723    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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