Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <<<<<<                                                                                               <<<<<<    <-----------HVH21                                                                          <<<<<<    <-----------TGA1                                                                           <<<<<<   --------->ANAC58                                                                           -------   --------->ANAC58                                                                    <-------TEIL   --------->ANAC46                                                                  <---------GLK1(2) --ARR14(2)                                                                          --------->ARR14(2) ->ARR14(2)           ------->TEIL                        <---------AtLEC2     <---------MYB52(1)   - -CCA1(2)   --------->ANAC46  --------->GLK1(2)     --------->ICU4 --------->MYB46(3)<---------ARR14(2)   gcaaaacgtcatacacgagaaatgaatttcaaattctatagaatcaagagagaaatgtttgtatgaagaacaaacctgtccgttttggattcgttgaatc  19397100         ---------->DOF2       --------->ANAC58       --------->ANAC58    <------ZmHOX2a(1) <<<GATA-1                                                                                        <-- <<<GATA-4         ---------->DOF2                                                                --- <<<GATA-2     --------->ATHB12              <---------AHL20(2)                                   <-- <<<GATA-3    <---------YAB1              <---------ARR11(3)                 ----------->GT1      --- -->ARR14(2)  --------->ICU4  ---------->DOF2<---------YAB1            >>>>>>>>>TBF1     --------->ANAC58 -------->TOE1(2)<---------YAB1 ----------->GT1 <---------YAB1     <------ZmHOX2a(1)     --------->ANAC58   cacctaggaacgaaagatgattaaagagaatggaaagtaagaacgatattattgtagacgaagagtagaggaagaagaagagtaagaaccctagcaatgg  19397200                                         <---------MYB52(1) -------At4g35610         <---------GLK1(1)<---------DOF5.7(2) ------>ZAT2   <------MYB83              --------->DOF5.7(2)                 ---------->DOF2 -------ZAT2   <------MYB46(1)----------->HVH21                   --------->ANAC46               ---- ------>At4g35610   <---------ANAC46--------->DEAR3(1)            <---------ALFIN1           --------   agctgaactcttgtatttggtgaagtagaattctgacaccgtcgttaactctgtattcaacaaattccacacatttcaaaaaagaaccaaaacaacaaca  19397300                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                        <---------MYB59                                                             <                        --------------->AGL15                                                       <                       ----------------->AGL1                                               <--------                       --------->ANAC55(2)                                   --------->ANAC58       <        --------->AHL20(1)                                                   --------->ANAC58       <        <---------AHL20(2)                                                   --------->ANAC46      <-        --------->AHL20(2)      --------->At4g35610                        <-----------RAV1(2)<------  <------ZmHOX2a(2)    ----------->RAV1(2)                              <---------At4g35610 <-------- <---------ARR11(3)   -------->P<---------At4g35610                     --------->At4g35610 --------- --------->ARR11(3)  <-----------GT1                                <---------MYB52(1)     <---------RAP2.6(3) ------>DOF2       <---------ANAC58                                --------->TOE2(3)   --------->ANAC58 --->RAV1(1)       <---------ANAC58     --------->CCA1(2)     --------->MYB46(3)       --------->ANAC58   aaagatcaaattttttgaatttcttacctgattcagaagaagagatggcatccttgtatgccaaaccatcgttaagctcaggccatggcaagccgatacg  19397400         --------->DEAR3(1)         ----------->HVH21        --------->RRTF1(1)        --------->RAP2.3(1)        --------->ATERF1(1)        <------NtERF2       <---------RAP2.6(1)       <---------ERF1       ------>NtERF2       <---------ATERF1(1)       <---------ORA47(2)       <---------RAP2.3(1)       <---------DEAR4(2)       <---------RRTF1(1)      <---------ATERF1(2)      <---------DEAR3(1)      --------->DEAR3(1)      <---------RAP2.3(3)      --------->ATERF1(2)      <---------RAP2.3(2)     <---------At4g35610     <---------ABI4(1)     <------NtERF2     --------->At4g35610     --------->RAP2.3(1)     --------->ATERF1(1)     --------->DREB2C(1)     --------->DEAR4(2)    ------>NtERF2    <---------DEAR4(2)    <---------ERF1    <---------RRTF1(1)    <---------ORA47(2)    <---------RAP2.3(1)    <---------RAP2.6(1)    <---------ATERF1(1)   <---------DEAR3(1)   --------->DEAR3(1)   --------->ALFIN1   <---------RAP2.3(3)   --------->ATERF1(2)   <---------RAP2.6(2)   <---------RAP2.3(2)   <---------ANAC46   <---------RRTF1(2)   <---------ATERF1(2)   <---------RRTF1(3)  <---------ABI4(1)  <------NtERF2  --------->ATERF1(1)          <------NtERF2  ------>NtERF2               <---------DEAR3(2) <---------ERF1               <---------ATERF1(1) <---------RAP2.3(1)         <---------DEAR3(1) <---------ATERF1(1)        <---------ORA47(1) <---------RRTF1(1)       <------MYB83 ---------RRTF1(3)        <------MYB46(1) ---------RRTF1(2)        <---------MYB46(3) ---------ANAC58         --------->MYB55(2) ---------RAP2.6(2)      --------->MYB111(2) ---------DEAR3(1)       <---------AtMYB61 ---------ANAC58         <---------MYB46(3) ---------ANAC46        <---------MYB52(1) -ARR14(2) <------NtERF2<--------P<------NtERF2          <---------MYB52(1) ---------RAP2.3(3)--------->MYB52(1)                    --------->At5g28300 ---------RAP2.3(2)<---------DOF5.7(2)<---------ARR14(2)--------->LBD16 --------LBD16   --------->DOF5.7(2)  --------->ARR14(2)----------->GT1*TSS  <------------CBF    ---- -TEIL<---------ANAC46  <---------MYB55(1)            <---------LBD16 ------>MYB83  ----------->HVH21 -MYB52(1)----------->RAV1(1)<---------RAP2.6(2)    <---------ARR14(2)--------->MYB52(1)      <------ >ARR14(2)------>NtERF2<---------MYB52(1)           --------->ARR14(2)------>MYB46(1)    <------ZmHOX2a(1)   ttgcggcggcggcgacatcgttaccggttggtcggcctcagttctggtttctcaaatccggtaaataaaaccaaacagaaattgaagtgaaggagacttt  19397500          --------->LBD16        <---------LBD16      ------>MYB46(1)  --------->YAB1      ------>MYB83    <---------ATHB12                            ------>MYB46(1)      --------->MYB52(1)                                          ------>MYB83    --------->AtMYB61------>MYB83                        <-----------TBP                      <------    <---------MYB59  ------>MYB46(1)                 --------->TOE2(3)                       ------>ZmHOX2a(1) <-----------GT1    --------->WOX13(1)             <-----------ARR10                        <-------- ----->YAB1       ------------>CBF         <---------MYB52(1)<-----------GT1           <----------DOF2 ----DOF2<---------LBD16      --------->LBD16     <---------CCA1(2) <----------DOF2 <-----------GT1   aataaaccaaaccgggatagaccaatcacatccgagtcaaactcagttattcaaatcttatttataccaactttcaagagtttttttttcttttcctaat  19397600                                                          <---------AHL20(2)                                                         --------->AHL20(1)                                                         <---------AHL20(1)                                                         --------->ARR11(3)                                                        --------->CCA1(2)                                                       <---------ARR11(3)                                                       --------->ARR11(3)                                              <--------ATHB1                                              -------->HAHB4                                              <--------HAHB4                                              --------->YAB1                                              <---------ICU4                <-----------GT1               --------->ATHB51              --------->DOF5.7(2)            <---------YAB1             --------->TOE2(3)               --------->ICU4                                    ------             <----------DOF2                 --------->AHL20(2)                           <---------YAB1             --------->TOE1(3)               <---------ATHB51                <---------At4g35610   ----------->GT1   <----------DOF2         <---------ATHB12             <---------At5g28300 <------ ---ICU4  <---------AHL20(2)               --------->YAB1<---------ARR11(3)  --------->At4g35610 <--- -MYB59   <-----------GT1        ----------->GT1 <-----------GT1         <-----------GT1--------->ZAT6   ttcaagagttattaactttaactcttttagtttttgagtaaaaactaataattacaagatatatttgttattttgttactgctgataatatcactattga  19397700                        <-----------------AGL1                        ----------------->AGL1                       <-----------------AGL1           <---------AHL20(2)                       <-----------------AG         --------->AHL20(2)            --------->YAB1                          <---------AHL20(2)   <---------YAB1     <-----------GT1      ----------->GT1 --->ATHB12--------->KAN4(1)               <---------MYB46(3)   --------->ICU4 ---YAB1  <---------KAN4(2)            --------->ATHB12<---------AHL20(2)                  ---------- ------WOX13(1)--------->YAB1  ----------->GT1    <---------AHL20(2)         <----------DOF2       --   ttgttttgatagaataatcaagagttacccatttggaaaaactattggttatatttttttaatggaataatgtgtttttcttttgtcaacaaaaaaagag  19397800                                                                       ----------->GT1                            <---------GLK1(1)                          <---------MYB46(3)          --    --------->ICU4          --------->GLK1(1)                          <------MYB46(1)             --    <---------YAB1       <------MYB83                              <-----------RAV1(1)           ----  --------->YAB1         <------MYB46(1)                         <----------DOF2              ------- >DOF2  ----------->GT1<--------P     <---------ARR14(2)      <-----------GT1                 ------- --------->GT1      ------>ZmHOX2a(1) --------->ARR14(2) <---------DAG2<------MYB83   ---------->DOF2   agagttataattgttaaatgtcctggttggatatcactcgaatccaattcttcacatagcctttttactttgttggtgaaaagtttcttaaagcacaagt  19397900                                                                                          --------->TOE1(3)                                                                                          --------->TOE2(3)                                                                                         ----------->GT1                                                                                         <---------ANAC46                                                                                         --------->ANAC55(2)                                                                                         <---------ANAC55(2)                                                                                        <------------                                                                                    --------->MYB52(2)        <----------DOF2                                                         <---------ICU4    <---------ALFIN1                                                            --------->ATHB12  --------->RAP2.6(2)                   ----------->GT1                         -------->HAHB4 ------->ANAC58                        ----------->GT1         ---------->DOF2 <---------YAB1 ------->ANAC58                      ---------->DOF2      <----------DOF2    <---------ICU4         < ------>DOF2                       --------->HSFB2a(2)    =========================================== -->ANAC58                    ------->TEIL      --------->MYB52(1)           --------->YAB1       --- -->ANAC58        <----------DOF2  <---------HSFB2a(2)    --------------->AGL15--------->ICU4 <------   aaagccacaacttttatgagctttgggacatgaatttccaaaagttaaaacaactgattactttctaaagcatcactaaaaatgattagttacgttaata  19398000  Previous    Next  AGI:  At3g52260.1    Description:  pseudouridine synthase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO68978.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145) Range:  from: 19394254    to: 19397471    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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